Wall clock time and date at job start Tue Mar 31 2020 23:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.87016 * 2 1 4 4 C 1.54326 * 109.88062 * 121.01013 * 2 1 3 5 5 H 1.08998 * 110.72036 * 215.76671 * 4 2 1 6 6 N 1.46499 * 110.72094 * 338.86853 * 4 2 1 7 7 C 1.36939 * 119.99547 * 202.55813 * 6 4 2 8 8 H 1.07993 * 120.00716 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99459 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00154 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99635 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7 15 15 C 1.55159 * 103.10119 * 97.31760 * 4 2 1 16 16 C 1.55131 * 101.48472 * 35.27999 * 15 4 2 17 17 N 1.47018 * 109.88682 * 238.82159 * 2 1 3 18 18 C 1.34775 * 125.64781 * 59.48865 * 17 2 1 19 19 O 1.21286 * 119.99858 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00007 * 180.02562 * 18 17 2 21 21 C 1.53007 * 109.47083 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.47083 * 179.97438 * 21 20 18 23 23 O 1.21278 * 120.00054 * 0.02562 * 22 21 20 24 24 N 1.34775 * 120.00007 * 180.02562 * 22 21 20 25 25 C 1.47156 * 120.97922 * 359.71706 * 24 22 21 26 26 C 1.53713 * 108.16078 * 129.43461 * 25 24 22 27 27 O 1.42964 * 109.15085 * 52.53476 * 26 25 24 28 28 C 1.42959 * 114.16448 * 297.29313 * 27 26 25 29 29 C 1.47151 * 120.98233 * 179.97438 * 24 22 21 30 30 H 1.08994 * 109.47606 * 298.98236 * 1 2 3 31 31 H 1.09000 * 109.47269 * 58.99076 * 1 2 3 32 32 H 1.09003 * 109.46361 * 178.98363 * 1 2 3 33 33 H 0.96998 * 120.00185 * 22.55197 * 6 4 2 34 34 H 0.96993 * 120.00007 * 0.02562 * 10 9 7 35 35 H 1.08993 * 111.00714 * 153.48760 * 15 4 2 36 36 H 1.08996 * 111.00382 * 277.34122 * 15 4 2 37 37 H 1.08996 * 110.41833 * 204.29265 * 16 15 4 38 38 H 1.09001 * 110.29354 * 82.08828 * 16 15 4 39 39 H 1.08998 * 109.46767 * 299.99569 * 20 18 17 40 40 H 1.08997 * 109.47472 * 60.00147 * 20 18 17 41 41 H 1.09005 * 109.47041 * 300.00198 * 21 20 18 42 42 H 1.08997 * 109.46746 * 59.99825 * 21 20 18 43 43 H 1.09004 * 109.67808 * 249.21116 * 25 24 22 44 44 H 1.08990 * 109.68484 * 9.76344 * 25 24 22 45 45 H 1.08999 * 109.65434 * 292.57030 * 26 25 24 46 46 H 1.09007 * 109.44263 * 172.37107 * 26 25 24 47 47 H 1.09003 * 109.51203 * 302.65289 * 28 27 26 48 48 H 1.09003 * 109.51220 * 182.50493 * 28 27 26 49 49 H 1.08991 * 109.68418 * 350.23571 * 29 24 22 50 50 H 1.09007 * 109.68029 * 110.75459 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 1.2439 5 1 2.9639 -0.2789 1.6206 6 7 1.0292 -0.7994 2.2886 7 6 1.3924 -0.9838 3.5960 8 1 2.4348 -1.0915 3.8569 9 6 0.4206 -1.0322 4.5861 10 7 -0.8499 -0.9004 4.2683 11 14 0.9159 -1.2844 6.3694 12 1 0.9453 -2.7376 6.6743 13 1 -0.0676 -0.6124 7.2562 14 1 2.2639 -0.7039 6.5957 15 6 2.3554 -2.1690 0.6990 16 6 2.8569 -1.8508 -0.7341 17 7 2.0301 -0.7157 -1.1828 18 6 1.7744 -0.3888 -2.4651 19 8 1.0764 0.5701 -2.7188 20 6 2.3549 -1.2153 -3.5835 21 6 1.9140 -0.6345 -4.9287 22 6 2.4950 -1.4606 -6.0472 23 8 3.1925 -2.4197 -5.7935 24 7 2.2394 -1.1336 -7.3294 25 6 1.3909 0.0219 -7.6617 26 6 2.1414 0.8887 -8.6855 27 8 2.5541 0.0687 -9.7814 28 6 3.4731 -0.9665 -9.4242 29 6 2.7959 -1.9248 -8.4383 30 1 -0.3634 0.4979 0.8989 31 1 -0.3634 0.5294 -0.8808 32 1 -0.3632 -1.0276 -0.0182 33 1 0.0929 -0.7029 2.0544 34 1 -1.1071 -0.7697 3.3422 35 1 3.1316 -2.6572 1.2882 36 1 1.4503 -2.7755 0.6691 37 1 2.7090 -2.7100 -1.3883 38 1 3.9094 -1.5682 -0.7122 39 1 3.4429 -1.1998 -3.5198 40 1 2.0005 -2.2425 -3.4981 41 1 0.8259 -0.6503 -4.9921 42 1 2.2681 0.3928 -5.0144 43 1 0.4500 -0.3246 -8.0894 44 1 1.1933 0.6033 -6.7613 45 1 3.0172 1.3358 -8.2153 46 1 1.4803 1.6758 -9.0485 47 1 4.3538 -0.5261 -8.9567 48 1 3.7703 -1.5142 -10.3185 49 1 3.5291 -2.6328 -8.0523 50 1 1.9943 -2.4646 -8.9426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180075473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:57 Heat of formation + Delta-G solvation = -90.665461 kcal Electronic energy + Delta-G solvation = -29919.975238 eV Core-core repulsion = 25754.966998 eV Total energy + Delta-G solvation = -4165.008241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.83854 -40.06325 -38.76387 -37.63442 -35.22223 -34.48280 -33.33326 -31.98394 -31.49612 -30.78342 -28.95469 -28.34396 -25.91158 -25.14237 -24.44044 -23.37956 -22.73461 -22.09478 -19.88267 -19.37428 -18.76739 -17.96177 -17.53542 -17.01472 -16.70727 -16.53612 -16.07304 -15.87008 -15.57577 -15.44997 -15.28275 -14.88974 -14.58667 -13.96650 -13.90463 -13.65771 -13.39426 -13.18811 -13.03891 -12.75080 -12.54866 -12.49659 -12.25982 -11.98224 -11.95263 -11.85716 -11.78270 -11.47515 -11.28362 -11.26978 -10.87443 -10.72337 -10.67499 -10.35884 -10.20268 -10.15785 -10.03842 -9.64041 -9.23876 -9.07151 -8.97083 -8.48407 -7.11650 -6.16197 -3.17500 2.22295 2.34919 2.70188 3.09369 3.26563 3.49035 3.53473 3.67597 4.03246 4.16883 4.39920 4.49700 4.58821 4.59817 4.62348 4.66604 4.73892 4.80286 4.95105 4.97426 5.05958 5.16738 5.19875 5.24773 5.25969 5.35149 5.38029 5.44892 5.55510 5.56494 5.61011 5.65884 5.71938 5.90357 5.93526 5.96453 6.08659 6.20703 6.42482 6.49392 6.52424 6.60260 6.65458 6.84104 6.87059 7.67770 7.72820 7.75785 8.24491 8.69462 9.14661 10.01092 10.15270 11.31615 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036122 B = 0.001867 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.975446 B =14993.204341 C =15449.887086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 H 0.072 0.928 4 C 0.178 3.822 5 H 0.065 0.935 6 N -0.728 5.728 7 C -0.335 4.335 8 H 0.066 0.934 9 C -0.043 4.043 10 N -0.941 5.941 11 Si 1.084 2.916 12 H -0.295 1.295 13 H -0.288 1.288 14 H -0.294 1.294 15 C -0.153 4.153 16 C 0.096 3.904 17 N -0.607 5.607 18 C 0.527 3.473 19 O -0.549 6.549 20 C -0.120 4.120 21 C -0.123 4.123 22 C 0.519 3.481 23 O -0.538 6.538 24 N -0.620 5.620 25 C 0.069 3.931 26 C 0.046 3.954 27 O -0.380 6.380 28 C 0.048 3.952 29 C 0.076 3.924 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.374 0.626 34 H 0.255 0.745 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.058 0.942 46 H 0.109 0.891 47 H 0.056 0.944 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.280 0.498 -27.274 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.090 0.910 4 C 0.067 3.933 5 H 0.083 0.917 6 N -0.373 5.373 7 C -0.466 4.466 8 H 0.084 0.916 9 C -0.241 4.241 10 N -0.586 5.586 11 Si 0.914 3.086 12 H -0.223 1.223 13 H -0.214 1.214 14 H -0.221 1.221 15 C -0.194 4.194 16 C -0.027 4.027 17 N -0.341 5.341 18 C 0.316 3.684 19 O -0.427 6.427 20 C -0.161 4.161 21 C -0.163 4.163 22 C 0.309 3.691 23 O -0.414 6.414 24 N -0.356 5.356 25 C -0.054 4.054 26 C -0.031 4.031 27 O -0.298 6.298 28 C -0.030 4.030 29 C -0.047 4.047 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.211 0.789 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.077 0.923 46 H 0.127 0.873 47 H 0.075 0.925 48 H 0.125 0.875 49 H 0.120 0.880 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.835 0.391 -25.851 27.015 hybrid contribution 0.451 -0.017 -1.404 1.475 sum 8.285 0.374 -27.255 28.489 Atomic orbital electron populations 1.22004 0.94846 1.02193 1.02601 1.21848 0.95206 0.95881 0.84765 0.91035 1.21121 0.93027 0.92148 0.87046 0.91697 1.42659 1.04039 1.87548 1.03045 1.20079 0.94577 1.47524 0.84422 0.91581 1.25804 0.93582 1.00329 1.04397 1.70858 1.15858 1.52195 1.19722 0.83182 0.74373 0.76197 0.74809 1.22289 1.21369 1.22106 1.23566 1.01698 1.01152 0.92984 1.22444 0.94569 0.88483 0.97202 1.48587 1.50077 1.30439 1.05007 1.20176 0.80753 0.85012 0.82501 1.90669 1.39253 1.29439 1.83378 1.21343 1.02969 1.00511 0.91249 1.21402 1.03126 1.00227 0.91523 1.20823 0.80118 0.84934 0.83271 1.90706 1.38510 1.28913 1.83291 1.48155 1.51184 1.30526 1.05706 1.22617 0.94250 0.87782 1.00741 1.23085 0.99141 0.92871 0.88017 1.87979 1.63706 1.45117 1.33021 1.22995 0.91588 0.89175 0.99192 1.22285 0.99898 0.94785 0.87720 0.90725 0.91861 0.92681 0.78875 0.93380 0.90434 0.90868 0.91066 0.91485 0.88317 0.88256 0.87886 0.88002 0.90083 0.88017 0.92349 0.87327 0.92528 0.87502 0.87952 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 7.94 37.16 0.30 -2.61 16 2 C 0.13 2.22 3.48 -66.95 -0.23 1.99 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 4 C 0.18 3.44 3.46 -66.09 -0.23 3.21 16 5 H 0.07 1.27 8.11 -51.93 -0.42 0.84 16 6 N -0.73 -17.53 4.98 -51.65 -0.26 -17.79 16 7 C -0.34 -9.10 9.97 -15.06 -0.15 -9.25 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 10 N -0.94 -28.62 13.70 55.49 0.76 -27.86 16 11 Si 1.08 25.47 29.92 -169.99 -5.09 20.38 16 12 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 15 C -0.15 -2.51 6.79 -24.46 -0.17 -2.67 16 16 C 0.10 1.27 6.69 -2.41 -0.02 1.25 16 17 N -0.61 -9.14 3.08 -162.88 -0.50 -9.64 16 18 C 0.53 7.60 7.63 -10.99 -0.08 7.52 16 19 O -0.55 -9.31 14.89 5.55 0.08 -9.23 16 20 C -0.12 -1.33 4.00 -27.88 -0.11 -1.44 16 21 C -0.12 -1.16 3.36 -27.88 -0.09 -1.26 16 22 C 0.52 5.32 7.71 -10.99 -0.08 5.24 16 23 O -0.54 -7.18 15.45 5.56 0.09 -7.10 16 24 N -0.62 -5.04 3.01 -172.05 -0.52 -5.56 16 25 C 0.07 0.40 6.57 -3.31 -0.02 0.38 16 26 C 0.05 0.25 7.00 37.53 0.26 0.51 16 27 O -0.38 -2.81 10.74 -35.23 -0.38 -3.19 16 28 C 0.05 0.29 6.98 37.29 0.26 0.55 16 29 C 0.08 0.54 6.63 -3.55 -0.02 0.52 16 30 H 0.07 1.48 6.72 -51.93 -0.35 1.13 16 31 H 0.06 1.15 6.76 -51.93 -0.35 0.80 16 32 H 0.05 1.03 8.06 -51.93 -0.42 0.61 16 33 H 0.37 9.28 3.82 -40.82 -0.16 9.12 16 34 H 0.25 7.64 6.77 -40.82 -0.28 7.37 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.04 8.10 -51.93 -0.42 0.61 16 40 H 0.10 1.09 7.80 -51.93 -0.41 0.69 16 41 H 0.10 0.94 7.96 -51.93 -0.41 0.53 16 42 H 0.10 0.88 7.63 -51.93 -0.40 0.49 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.50 6.05 -51.93 -0.31 0.18 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.82 7.08 -51.93 -0.37 0.45 16 50 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 392.39 15.07 5.91 5.91 Total: -1.00 -34.53 392.39 -8.50 -43.04 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -8.11 Total: 8.44 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -0.49 Total: 2.60 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.52 Total: -60.85 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.21 Total: -19.52 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.09 Total: 20.38 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.53 -8.50 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180075473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.629 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds