Wall clock time and date at job start Tue Mar 31 2020 23:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50698 * 120.00332 * 2 1 4 4 C 1.53005 * 109.47490 * 124.99684 * 3 2 1 5 5 O 1.42898 * 109.47095 * 180.02562 * 4 3 2 6 6 C 1.42905 * 113.99669 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46931 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99974 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00044 * 179.97438 * 7 6 5 10 10 C 1.47423 * 125.64706 * 0.02675 * 9 7 6 11 11 C 1.54906 * 104.83327 * 204.08999 * 10 9 7 12 12 C 1.55156 * 101.58293 * 322.99325 * 11 10 9 13 13 H 1.08996 * 110.71771 * 276.95718 * 12 11 10 14 14 N 1.46906 * 110.72105 * 153.86273 * 12 11 10 15 15 C 1.46901 * 110.99793 * 86.45499 * 14 12 11 16 16 C 1.50701 * 109.46921 * 179.97438 * 15 14 12 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.47027 * 125.65007 * 179.97438 * 9 7 6 28 28 H 1.09001 * 109.88064 * 298.39403 * 27 9 7 29 29 C 1.53001 * 109.88037 * 59.55780 * 27 9 7 30 30 H 1.08002 * 119.99932 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00344 * 359.97438 * 1 2 3 32 32 H 1.08008 * 120.00259 * 180.02562 * 2 1 3 33 33 H 1.09011 * 109.46539 * 5.00251 * 3 2 1 34 34 H 1.08999 * 109.47575 * 245.00616 * 3 2 1 35 35 H 1.08997 * 109.46667 * 60.00612 * 4 3 2 36 36 H 1.08995 * 109.47225 * 300.00553 * 4 3 2 37 37 H 1.09001 * 109.47262 * 60.00053 * 6 5 4 38 38 H 1.09002 * 109.46920 * 299.99840 * 6 5 4 39 39 H 1.09001 * 110.36733 * 85.25374 * 10 9 7 40 40 H 1.09000 * 110.46077 * 322.98073 * 10 9 7 41 41 H 1.09002 * 111.00768 * 204.91567 * 11 10 9 42 42 H 1.09004 * 111.03444 * 81.08078 * 11 10 9 43 43 H 1.00898 * 110.99995 * 210.40577 * 14 12 11 44 44 H 1.09002 * 109.47401 * 59.99808 * 15 14 12 45 45 H 1.09001 * 109.46874 * 299.99821 * 15 14 12 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.46765 * 177.80901 * 29 27 9 49 49 H 1.09003 * 109.47419 * 297.80957 * 29 27 9 50 50 H 1.09003 * 109.46940 * 57.81309 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7491 2.5709 1.1819 6 6 4.6886 2.6996 2.2511 7 6 5.3806 4.0347 2.1536 8 8 5.0969 4.8008 1.2571 9 7 6.3140 4.3780 3.0632 10 6 6.7533 3.5471 4.1990 11 6 7.3108 4.5546 5.2351 12 6 7.9955 5.6002 4.3158 13 1 8.9952 5.2699 4.0340 14 7 8.0498 6.9132 4.9724 15 6 9.2463 7.0306 5.8165 16 6 9.2679 8.3877 6.4715 17 8 8.3741 9.1790 6.2566 18 7 10.2797 8.7216 7.2968 19 6 10.2990 9.9560 7.8931 20 1 9.5036 10.6609 7.7010 21 6 11.3424 10.3005 8.7435 22 7 12.3104 9.4429 8.9767 23 14 11.3684 11.9821 9.5565 24 1 10.1728 12.7548 9.1337 25 1 11.3563 11.8186 11.0324 26 1 12.5970 12.7099 9.1492 27 6 7.0637 5.6425 3.0864 28 1 7.6551 5.7396 2.1760 29 6 6.0942 6.8199 3.2086 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5401 0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3584 2.1316 0.0896 34 1 2.6212 1.4026 -0.9314 35 1 3.7399 0.5066 1.0921 36 1 2.4773 1.2356 2.1130 37 1 5.4280 1.9017 2.1831 38 1 4.1654 2.6299 3.2048 39 1 7.5348 2.8559 3.8835 40 1 5.9098 2.9988 4.6186 41 1 8.0373 4.0772 5.8927 42 1 6.5050 5.0093 5.8115 43 1 8.0117 7.6588 4.2936 44 1 10.1382 6.9102 5.2015 45 1 9.2269 6.2566 6.5838 46 1 10.9942 8.0886 7.4689 47 1 13.0386 9.6833 9.5708 48 1 6.6585 7.7508 3.2644 49 1 5.4395 6.8435 2.3374 50 1 5.4941 6.7042 4.1111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180253619.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:43 Heat of formation + Delta-G solvation = -85.838601 kcal Electronic energy + Delta-G solvation = -28738.812260 eV Core-core repulsion = 24574.013328 eV Total energy + Delta-G solvation = -4164.798932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56238 -38.85194 -38.18468 -37.47049 -35.39490 -34.81642 -33.82359 -31.59702 -31.21827 -30.95691 -30.02419 -27.66795 -26.58011 -25.24897 -23.84157 -23.44938 -23.13290 -20.47694 -20.10120 -19.37343 -19.15298 -17.93484 -17.57960 -16.95704 -16.92186 -16.25417 -15.88209 -15.72840 -15.61841 -15.32124 -14.80363 -14.49207 -14.26541 -14.08398 -13.77011 -13.70753 -13.60015 -13.20044 -13.07582 -12.95857 -12.42158 -12.37123 -12.19437 -11.97531 -11.94077 -11.65879 -11.61002 -11.54268 -11.50310 -11.38787 -11.11443 -10.92800 -10.68573 -10.35315 -10.23936 -10.12291 -9.89236 -9.81508 -9.53594 -8.87382 -8.49480 -8.14542 -7.97903 -6.43558 -3.84291 1.74369 2.37987 2.41741 3.15370 3.26279 3.33572 3.46081 3.88577 4.03516 4.12474 4.27361 4.40667 4.45865 4.53896 4.60375 4.67371 4.73194 4.80922 4.88525 4.95095 4.96521 4.97098 5.08395 5.20289 5.22828 5.28596 5.36216 5.45866 5.49139 5.52396 5.56022 5.61165 5.75113 5.81785 5.93344 6.03383 6.10084 6.13509 6.23130 6.25167 6.26178 6.48948 6.66293 7.14530 7.28109 7.54029 7.56926 7.98311 8.04801 8.59260 9.16427 9.52384 10.03616 10.74206 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.001520 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.892752 B =18422.242904 C =18650.306942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.094 4.094 4 C 0.065 3.935 5 O -0.364 6.364 6 C 0.051 3.949 7 C 0.530 3.470 8 O -0.516 6.516 9 N -0.612 5.612 10 C 0.095 3.905 11 C -0.123 4.123 12 C 0.076 3.924 13 H 0.059 0.941 14 N -0.655 5.655 15 C 0.049 3.951 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.139 3.861 28 H 0.074 0.926 29 C -0.155 4.155 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.354 0.646 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.441 -22.540 -12.698 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.011 4.011 5 O -0.283 6.283 6 C -0.029 4.029 7 C 0.317 3.683 8 O -0.390 6.390 9 N -0.349 5.349 10 C -0.028 4.028 11 C -0.161 4.161 12 C -0.035 4.035 13 H 0.077 0.923 14 N -0.290 5.290 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C 0.036 3.964 28 H 0.092 0.908 29 C -0.213 4.213 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.177 0.823 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.536 -21.602 -12.913 29.063 hybrid contribution 1.444 0.094 0.286 1.475 sum -13.092 -21.508 -12.626 28.168 Atomic orbital electron populations 1.23930 0.95907 1.02155 1.00324 1.22789 0.96025 0.97916 1.00610 1.20643 0.97950 0.96003 0.98480 1.22501 0.94003 0.85921 0.98704 1.87994 1.54315 1.37523 1.48433 1.22149 0.93052 0.95726 0.91972 1.19810 0.79062 0.88143 0.81265 1.90734 1.62596 1.52338 1.33364 1.48443 1.39522 1.18811 1.28149 1.22433 0.99537 0.94204 0.86604 1.22874 1.01307 0.95141 0.96793 1.22558 0.96920 0.91554 0.92438 0.92278 1.60366 1.40144 1.02427 1.26076 1.21733 0.91153 0.98133 0.97305 1.19783 0.84578 0.88704 0.84353 1.90535 1.38144 1.52357 1.65571 1.41861 1.21652 1.16040 1.40456 1.19759 1.08249 0.91928 1.22903 0.87849 1.25252 0.95374 0.99628 0.97639 1.69620 1.11534 1.35608 1.37570 0.85807 0.78342 0.81582 0.78671 1.19194 1.20746 1.20779 1.21614 0.92828 0.84279 0.97698 0.90752 1.22000 0.99624 0.96939 1.02755 0.88255 0.88331 0.87161 0.90402 0.89901 0.92977 0.92939 0.90353 0.90242 0.91090 0.90497 0.89833 0.89089 0.82264 0.93757 0.89544 0.77486 0.91934 0.90908 0.91702 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.97 14.32 29.02 0.42 -0.55 16 2 C -0.16 -0.86 9.52 -36.02 -0.34 -1.20 16 3 C -0.09 -0.64 6.03 -27.88 -0.17 -0.81 16 4 C 0.07 0.46 5.92 37.16 0.22 0.68 16 5 O -0.36 -3.92 9.88 -55.14 -0.54 -4.47 16 6 C 0.05 0.44 5.43 36.01 0.20 0.64 16 7 C 0.53 6.51 7.71 -10.99 -0.08 6.42 16 8 O -0.52 -8.59 15.41 -14.36 -0.22 -8.81 16 9 N -0.61 -6.53 3.08 -163.02 -0.50 -7.03 16 10 C 0.10 0.71 6.69 -2.53 -0.02 0.69 16 11 C -0.12 -1.15 6.71 -24.58 -0.16 -1.31 16 12 C 0.08 0.87 3.11 -65.88 -0.21 0.66 16 13 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 14 N -0.65 -9.80 5.21 -106.05 -0.55 -10.36 16 15 C 0.05 0.81 6.02 -4.97 -0.03 0.78 16 16 C 0.44 10.08 7.82 -10.98 -0.09 9.99 16 17 O -0.58 -15.47 15.78 5.55 0.09 -15.39 16 18 N -0.56 -13.96 5.29 -10.96 -0.06 -14.01 16 19 C -0.30 -8.24 9.68 -14.94 -0.14 -8.38 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.14 1.65 3.41 -66.95 -0.23 1.43 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 C -0.16 -2.10 8.40 37.16 0.31 -1.79 16 30 H 0.10 0.40 8.06 -52.49 -0.42 -0.02 16 31 H 0.10 0.50 7.84 -52.49 -0.41 0.09 16 32 H 0.11 0.48 8.06 -52.48 -0.42 0.05 16 33 H 0.08 0.58 7.79 -51.92 -0.40 0.18 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.52 7.85 -51.93 -0.41 0.11 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.42 7.48 -51.93 -0.39 0.03 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.35 5.64 6.14 -39.29 -0.24 5.40 16 44 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 45 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 46 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 47 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.07 1.00 6.23 -51.93 -0.32 0.68 16 49 H 0.06 0.96 6.77 -51.93 -0.35 0.61 16 50 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 411.81 15.07 6.21 6.21 Total: -1.00 -34.11 411.81 -8.57 -42.68 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -8.26 Total: 11.06 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -0.42 Total: 7.76 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.39 Total: -54.90 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.68 Total: -28.67 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.11 -8.57 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180253619.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.158 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds