Wall clock time and date at job start Tue Mar 31 2020 23:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.39263 * 2 1 4 4 C 1.54392 * 110.34433 * 237.76404 * 2 1 3 5 5 N 1.48140 * 104.61958 * 264.99988 * 4 2 1 6 6 C 1.34772 * 127.83819 * 140.39621 * 5 4 2 7 7 O 1.21287 * 120.00268 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00194 * 0.02562 * 6 5 4 9 9 N 1.46497 * 109.47251 * 180.02562 * 8 6 5 10 10 C 1.46090 * 118.73003 * 269.73258 * 9 8 6 11 11 C 1.53188 * 109.82912 * 161.46303 * 10 9 8 12 12 O 1.43244 * 108.53933 * 49.51185 * 11 10 9 13 13 C 1.42961 * 112.99168 * 291.49004 * 12 11 10 14 14 C 1.33881 * 118.72944 * 90.00077 * 9 8 6 15 15 O 1.21279 * 118.83060 * 1.88325 * 14 9 8 16 16 C 1.48143 * 104.32381 * 320.41231 * 5 4 2 17 17 C 1.54286 * 110.34096 * 122.22832 * 2 1 3 18 18 C 1.53004 * 110.34355 * 359.89750 * 17 2 1 19 19 C 1.52996 * 110.34441 * 237.74063 * 17 2 1 20 20 N 1.46498 * 109.47059 * 179.97438 * 19 17 2 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31611 * 120.00081 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 90.00178 * 25 23 21 27 27 H 1.48498 * 109.47011 * 210.00042 * 25 23 21 28 28 H 1.48502 * 109.47495 * 329.99664 * 25 23 21 29 29 H 1.08996 * 109.47192 * 297.77417 * 1 2 3 30 30 H 1.09001 * 109.46639 * 57.77167 * 1 2 3 31 31 H 1.09005 * 109.47210 * 177.76699 * 1 2 3 32 32 H 1.09000 * 110.40442 * 23.78311 * 4 2 1 33 33 H 1.09002 * 110.40487 * 146.21230 * 4 2 1 34 34 H 1.09006 * 109.47138 * 299.99895 * 8 6 5 35 35 H 1.09003 * 109.47330 * 59.99942 * 8 6 5 36 36 H 1.08999 * 109.39402 * 281.77829 * 10 9 8 37 37 H 1.08997 * 109.39692 * 41.50178 * 10 9 8 38 38 H 1.09002 * 109.79633 * 289.72843 * 11 10 9 39 39 H 1.08998 * 109.68572 * 169.23863 * 11 10 9 40 40 H 1.09001 * 109.41293 * 289.49576 * 13 12 11 41 41 H 1.08995 * 109.41911 * 169.69760 * 13 12 11 42 42 H 1.09005 * 110.40742 * 280.80548 * 16 5 4 43 43 H 1.09003 * 110.41094 * 158.36930 * 16 5 4 44 44 H 1.08999 * 109.46543 * 298.52492 * 18 17 2 45 45 H 1.08999 * 109.46877 * 58.52396 * 18 17 2 46 46 H 1.08995 * 109.47236 * 178.52348 * 18 17 2 47 47 H 1.09004 * 109.47066 * 60.00144 * 19 17 2 48 48 H 1.08994 * 109.46974 * 300.00292 * 19 17 2 49 49 H 0.97001 * 120.00384 * 0.02562 * 20 19 17 50 50 H 0.97008 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0216 0.0000 4 6 2.0668 -0.7722 -1.2245 5 7 2.3139 -2.1439 -0.7226 6 6 2.0770 -3.3106 -1.3543 7 8 2.3353 -4.3608 -0.8054 8 6 1.4913 -3.3102 -2.7428 9 7 1.3305 -4.6910 -3.2053 10 6 2.4313 -5.3214 -3.9300 11 6 2.2606 -6.8436 -3.9125 12 8 0.9215 -7.1565 -4.3135 13 6 -0.0575 -6.7543 -3.3525 14 6 0.1785 -5.3244 -2.9523 15 8 -0.7057 -4.7236 -2.3797 16 6 2.8801 -1.9423 0.6315 17 6 2.0663 -0.7715 1.2238 18 6 0.9061 -1.3012 2.0689 19 6 2.9692 0.1307 2.0675 20 7 3.4667 -0.6198 3.2231 21 6 4.3036 -0.0157 4.1230 22 1 4.5933 1.0153 3.9832 23 6 4.7796 -0.7285 5.2149 24 7 5.5836 -0.1478 6.0801 25 14 4.2791 -2.5119 5.4562 26 1 5.2533 -3.3969 4.7685 27 1 4.2608 -2.8289 6.9069 28 1 2.9254 -2.7278 4.8853 29 1 -0.3633 0.4789 0.9092 30 1 -0.3632 0.5481 -0.8694 31 1 -0.3634 -1.0269 -0.0400 32 1 1.3224 -0.7871 -2.0205 33 1 2.9950 -0.3242 -1.5792 34 1 0.5192 -2.8173 -2.7270 35 1 2.1588 -2.7756 -3.4187 36 1 2.4367 -4.9662 -4.9605 37 1 3.3757 -5.0593 -3.4532 38 1 2.4392 -7.2236 -2.9065 39 1 2.9663 -7.3003 -4.6064 40 1 0.0147 -7.3934 -2.4725 41 1 -1.0525 -6.8492 -3.7873 42 1 3.9354 -1.6770 0.5665 43 1 2.7494 -2.8400 1.2357 44 1 0.3122 -0.4642 2.4359 45 1 0.2793 -1.9515 1.4586 46 1 1.3002 -1.8654 2.9141 47 1 2.3998 0.9936 2.4129 48 1 3.8111 0.4690 1.4636 49 1 3.2068 -1.5459 3.3484 50 1 5.9160 -0.6457 6.8434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181745584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:33 Heat of formation + Delta-G solvation = -79.126090 kcal Electronic energy + Delta-G solvation = -31210.949641 eV Core-core repulsion = 27046.441785 eV Total energy + Delta-G solvation = -4164.507856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21717 -40.26807 -38.43664 -37.94854 -35.62790 -35.02564 -33.23099 -31.64976 -30.87723 -30.16924 -29.54805 -27.65091 -26.68404 -25.65478 -25.17690 -24.23394 -22.96760 -21.14235 -20.00047 -19.24860 -18.73258 -18.11587 -17.85719 -17.43196 -17.03801 -16.28099 -16.15141 -15.69390 -15.52368 -14.82711 -14.62198 -14.60376 -14.32316 -14.12910 -14.03031 -13.80486 -13.65963 -13.47360 -13.28612 -12.88871 -12.58954 -12.43397 -12.31401 -12.17692 -12.02890 -11.78489 -11.71960 -11.47171 -11.42409 -11.25933 -10.96547 -10.86016 -10.46852 -10.43273 -10.25852 -10.20795 -10.01000 -9.82323 -9.56877 -9.10797 -8.90957 -8.73167 -7.23795 -5.77592 -3.12909 2.04517 2.34020 2.50597 2.96318 3.28149 3.38339 3.42029 3.46585 3.88840 4.23359 4.28775 4.47032 4.54680 4.59249 4.62361 4.69855 4.75167 4.79356 4.90931 4.96345 5.03369 5.13955 5.17750 5.25548 5.27581 5.34401 5.40041 5.48491 5.54980 5.66179 5.69273 5.73653 5.80657 5.91994 5.93078 5.98929 6.10991 6.15715 6.29270 6.29784 6.46372 6.53449 6.63812 6.70592 6.89802 7.47827 7.65306 7.98161 8.05059 8.41483 9.20439 9.93096 10.12491 11.40825 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.002935 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.993099 B = 9539.284624 C =10464.603691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.092 0.908 4 C 0.102 3.898 5 N -0.618 5.618 6 C 0.518 3.482 7 O -0.536 6.536 8 C 0.095 3.905 9 N -0.588 5.588 10 C 0.083 3.917 11 C 0.043 3.957 12 O -0.371 6.371 13 C 0.052 3.948 14 C 0.494 3.506 15 O -0.537 6.537 16 C 0.117 3.883 17 C -0.079 4.079 18 C -0.134 4.134 19 C 0.173 3.827 20 N -0.755 5.755 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.880 3.120 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.277 1.277 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.032 0.968 48 H 0.029 0.971 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.801 -7.661 -26.043 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.110 0.890 4 C -0.021 4.021 5 N -0.353 5.353 6 C 0.305 3.695 7 O -0.413 6.413 8 C -0.031 4.031 9 N -0.321 5.321 10 C -0.040 4.040 11 C -0.034 4.034 12 O -0.289 6.289 13 C -0.027 4.027 14 C 0.282 3.718 15 O -0.414 6.414 16 C -0.005 4.005 17 C -0.081 4.081 18 C -0.191 4.191 19 C 0.046 3.954 20 N -0.401 5.401 21 C -0.373 4.373 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.710 3.290 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.203 1.203 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.111 0.889 41 H 0.149 0.851 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.195 0.805 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.058 -7.979 -25.584 28.624 hybrid contribution 0.020 -0.999 0.684 1.211 sum -10.037 -8.978 -24.899 28.308 Atomic orbital electron populations 1.21926 0.94348 1.02018 1.01792 1.22124 0.96411 0.99599 0.93417 0.89016 1.22570 1.00672 0.81749 0.97091 1.49002 1.62851 1.05300 1.18126 1.20611 0.78393 0.82537 0.87963 1.90709 1.52583 1.30479 1.67512 1.21325 1.04081 0.84498 0.93211 1.47051 1.15508 1.13700 1.55850 1.22229 0.90496 0.94266 0.97026 1.23053 0.84600 0.93247 1.02453 1.88174 1.15274 1.81653 1.43834 1.22823 0.94819 0.90225 0.94822 1.21015 0.81728 0.90198 0.78872 1.90755 1.42550 1.66340 1.41762 1.22512 0.97410 0.98751 0.81830 1.21771 0.96253 0.95217 0.94840 1.21887 0.97056 1.00922 0.99235 1.20689 0.93925 0.92872 0.87943 1.42762 1.58393 1.11980 1.26946 1.19039 1.19302 0.97621 1.01361 0.89186 1.24643 0.99423 0.97582 0.97310 1.69694 1.37111 1.36286 1.15106 0.86627 0.78397 0.86719 0.77247 1.21014 1.21645 1.20328 0.91742 0.92981 0.92368 0.90442 0.90534 0.86546 0.87394 0.90299 0.89369 0.91252 0.86469 0.88882 0.85066 0.90141 0.90217 0.91968 0.93044 0.92297 0.95059 0.95291 0.80517 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.92 37.16 0.29 -1.17 16 2 C -0.10 -1.05 3.31 -89.22 -0.30 -1.34 16 3 H 0.09 0.92 7.71 -51.93 -0.40 0.52 16 4 C 0.10 0.97 6.46 -2.41 -0.02 0.95 16 5 N -0.62 -7.99 3.32 -169.30 -0.56 -8.55 16 6 C 0.52 7.15 7.98 -10.99 -0.09 7.07 16 7 O -0.54 -9.58 16.70 5.55 0.09 -9.49 16 8 C 0.10 0.95 4.78 -5.20 -0.02 0.92 16 9 N -0.59 -6.02 2.32 -175.68 -0.41 -6.43 16 10 C 0.08 0.58 6.63 -4.17 -0.03 0.55 16 11 C 0.04 0.28 6.91 37.25 0.26 0.54 16 12 O -0.37 -3.07 10.85 -35.23 -0.38 -3.45 16 13 C 0.05 0.45 6.98 35.84 0.25 0.70 16 14 C 0.49 5.88 7.58 -11.55 -0.09 5.79 16 15 O -0.54 -8.29 16.36 5.56 0.09 -8.20 16 16 C 0.12 1.82 5.71 -2.41 -0.01 1.81 16 17 C -0.08 -1.17 0.73 -153.10 -0.11 -1.28 16 18 C -0.13 -2.08 7.07 37.16 0.26 -1.82 16 19 C 0.17 3.16 4.87 -4.04 -0.02 3.14 16 20 N -0.75 -17.57 4.93 -59.91 -0.30 -17.87 16 21 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 25 Si 0.88 22.57 27.74 -169.99 -4.71 17.85 16 26 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 29 H 0.06 0.68 6.84 -51.93 -0.36 0.33 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.67 6.76 -51.93 -0.35 0.32 16 32 H 0.08 0.56 7.02 -51.93 -0.36 0.19 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.12 1.18 7.04 -51.93 -0.37 0.82 16 35 H 0.11 0.69 8.04 -51.93 -0.42 0.27 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.30 7.83 -51.93 -0.41 0.89 16 43 H 0.08 1.45 7.60 -51.93 -0.39 1.05 16 44 H 0.06 0.91 6.89 -51.93 -0.36 0.55 16 45 H 0.05 0.77 6.71 -51.93 -0.35 0.42 16 46 H 0.06 1.06 6.78 -51.93 -0.35 0.71 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 49 H 0.36 8.43 4.05 -40.82 -0.17 8.26 16 50 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -37.24 390.77 -7.48 -44.72 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.09 Total: 5.22 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 0.13 Total: 8.96 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.49 Total: -61.52 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.20 Total: -21.13 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.24 -7.48 -44.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181745584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.404 kcal (2) G-P(sol) polarization free energy of solvation -37.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds