Wall clock time and date at job start Tue Mar 31 2020 23:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.39263 * 2 1 4 4 C 1.54392 * 110.34433 * 237.76404 * 2 1 3 5 5 N 1.48140 * 104.61958 * 264.99988 * 4 2 1 6 6 C 1.34772 * 127.83819 * 140.39621 * 5 4 2 7 7 O 1.21287 * 120.00268 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00194 * 0.02562 * 6 5 4 9 9 N 1.46497 * 109.47251 * 180.02562 * 8 6 5 10 10 C 1.46090 * 118.73003 * 269.73258 * 9 8 6 11 11 C 1.53188 * 109.82912 * 161.46303 * 10 9 8 12 12 O 1.43244 * 108.53933 * 49.51185 * 11 10 9 13 13 C 1.42961 * 112.99168 * 291.49004 * 12 11 10 14 14 C 1.33881 * 118.72944 * 90.00077 * 9 8 6 15 15 O 1.21279 * 118.83060 * 1.88325 * 14 9 8 16 16 C 1.48143 * 104.32381 * 320.41231 * 5 4 2 17 17 C 1.54286 * 110.34096 * 122.22832 * 2 1 3 18 18 C 1.53004 * 110.34355 * 359.89750 * 17 2 1 19 19 C 1.52996 * 110.34441 * 237.74063 * 17 2 1 20 20 N 1.46498 * 109.47059 * 179.97438 * 19 17 2 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31611 * 120.00081 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 90.00178 * 25 23 21 27 27 H 1.48498 * 109.47011 * 210.00042 * 25 23 21 28 28 H 1.48502 * 109.47495 * 329.99664 * 25 23 21 29 29 H 1.08996 * 109.47192 * 297.77417 * 1 2 3 30 30 H 1.09001 * 109.46639 * 57.77167 * 1 2 3 31 31 H 1.09005 * 109.47210 * 177.76699 * 1 2 3 32 32 H 1.09000 * 110.40442 * 23.78311 * 4 2 1 33 33 H 1.09002 * 110.40487 * 146.21230 * 4 2 1 34 34 H 1.09006 * 109.47138 * 299.99895 * 8 6 5 35 35 H 1.09003 * 109.47330 * 59.99942 * 8 6 5 36 36 H 1.08999 * 109.39402 * 281.77829 * 10 9 8 37 37 H 1.08997 * 109.39692 * 41.50178 * 10 9 8 38 38 H 1.09002 * 109.79633 * 289.72843 * 11 10 9 39 39 H 1.08998 * 109.68572 * 169.23863 * 11 10 9 40 40 H 1.09001 * 109.41293 * 289.49576 * 13 12 11 41 41 H 1.08995 * 109.41911 * 169.69760 * 13 12 11 42 42 H 1.09005 * 110.40742 * 280.80548 * 16 5 4 43 43 H 1.09003 * 110.41094 * 158.36930 * 16 5 4 44 44 H 1.08999 * 109.46543 * 298.52492 * 18 17 2 45 45 H 1.08999 * 109.46877 * 58.52396 * 18 17 2 46 46 H 1.08995 * 109.47236 * 178.52348 * 18 17 2 47 47 H 1.09004 * 109.47066 * 60.00144 * 19 17 2 48 48 H 1.08994 * 109.46974 * 300.00292 * 19 17 2 49 49 H 0.97001 * 120.00384 * 0.02562 * 20 19 17 50 50 H 0.97008 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0216 0.0000 4 6 2.0668 -0.7722 -1.2245 5 7 2.3139 -2.1439 -0.7226 6 6 2.0770 -3.3106 -1.3543 7 8 2.3353 -4.3608 -0.8054 8 6 1.4913 -3.3102 -2.7428 9 7 1.3305 -4.6910 -3.2053 10 6 2.4313 -5.3214 -3.9300 11 6 2.2606 -6.8436 -3.9125 12 8 0.9215 -7.1565 -4.3135 13 6 -0.0575 -6.7543 -3.3525 14 6 0.1785 -5.3244 -2.9523 15 8 -0.7057 -4.7236 -2.3797 16 6 2.8801 -1.9423 0.6315 17 6 2.0663 -0.7715 1.2238 18 6 0.9061 -1.3012 2.0689 19 6 2.9692 0.1307 2.0675 20 7 3.4667 -0.6198 3.2231 21 6 4.3036 -0.0157 4.1230 22 1 4.5933 1.0153 3.9832 23 6 4.7796 -0.7285 5.2149 24 7 5.5836 -0.1478 6.0801 25 14 4.2791 -2.5119 5.4562 26 1 5.2533 -3.3969 4.7685 27 1 4.2608 -2.8289 6.9069 28 1 2.9254 -2.7278 4.8853 29 1 -0.3633 0.4789 0.9092 30 1 -0.3632 0.5481 -0.8694 31 1 -0.3634 -1.0269 -0.0400 32 1 1.3224 -0.7871 -2.0205 33 1 2.9950 -0.3242 -1.5792 34 1 0.5192 -2.8173 -2.7270 35 1 2.1588 -2.7756 -3.4187 36 1 2.4367 -4.9662 -4.9605 37 1 3.3757 -5.0593 -3.4532 38 1 2.4392 -7.2236 -2.9065 39 1 2.9663 -7.3003 -4.6064 40 1 0.0147 -7.3934 -2.4725 41 1 -1.0525 -6.8492 -3.7873 42 1 3.9354 -1.6770 0.5665 43 1 2.7494 -2.8400 1.2357 44 1 0.3122 -0.4642 2.4359 45 1 0.2793 -1.9515 1.4586 46 1 1.3002 -1.8654 2.9141 47 1 2.3998 0.9936 2.4129 48 1 3.8111 0.4690 1.4636 49 1 3.2068 -1.5459 3.3484 50 1 5.9160 -0.6457 6.8434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181745584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:32 Heat of formation + Delta-G solvation = -106.881523 kcal Electronic energy + Delta-G solvation = -31212.153207 eV Core-core repulsion = 27046.441785 eV Total energy + Delta-G solvation = -4165.711422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.05681 -41.27894 -39.49885 -38.75883 -36.69489 -36.39915 -34.64835 -33.33667 -31.75409 -31.34134 -30.44622 -28.71576 -27.83930 -26.71748 -26.29719 -24.94423 -24.58113 -22.48335 -20.91578 -20.23368 -20.07944 -19.38013 -18.81803 -18.38640 -17.98786 -17.27168 -17.07907 -16.60603 -16.43665 -16.34399 -15.90744 -15.66502 -15.37087 -15.28067 -15.17976 -15.01848 -14.65449 -14.50470 -14.32114 -14.11527 -13.92414 -13.62930 -13.46470 -13.33166 -13.00912 -12.96379 -12.83297 -12.69506 -12.59458 -12.43548 -12.34416 -12.14312 -11.89814 -11.68154 -11.54609 -11.50029 -11.30966 -11.21894 -11.01488 -10.59708 -9.93408 -9.79825 -9.30300 -8.06144 -5.37211 1.18475 1.31698 1.32836 1.38982 1.48262 1.60152 2.03004 2.42393 2.70988 3.22617 3.24439 3.26851 3.50314 3.60258 3.71252 3.74141 3.91607 3.98444 4.08136 4.15806 4.19107 4.21664 4.25537 4.28724 4.36210 4.44415 4.50683 4.56867 4.66481 4.67357 4.72533 4.76624 4.77215 4.86922 4.95555 4.97805 5.02598 5.05340 5.10664 5.20953 5.32055 5.37758 5.54908 5.69619 5.74706 6.15373 6.18878 6.48792 6.81618 7.01772 7.05295 7.82939 7.99384 9.15629 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.002935 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.993099 B = 9539.284624 C =10464.603691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.110 0.890 4 C 0.102 3.898 5 N -0.616 5.616 6 C 0.511 3.489 7 O -0.587 6.587 8 C 0.100 3.900 9 N -0.590 5.590 10 C 0.078 3.922 11 C 0.040 3.960 12 O -0.374 6.374 13 C 0.056 3.944 14 C 0.483 3.517 15 O -0.582 6.582 16 C 0.118 3.882 17 C -0.072 4.072 18 C -0.128 4.128 19 C 0.171 3.829 20 N -0.759 5.759 21 C -0.225 4.225 22 H 0.066 0.934 23 C -0.058 4.058 24 N -0.981 5.981 25 Si 0.940 3.060 26 H -0.282 1.282 27 H -0.293 1.293 28 H -0.262 1.262 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.153 0.847 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.149 0.851 40 H 0.096 0.904 41 H 0.148 0.852 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.027 0.973 47 H 0.035 0.965 48 H 0.037 0.963 49 H 0.361 0.639 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 -7.542 -29.623 32.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.128 0.872 4 C -0.019 4.019 5 N -0.349 5.349 6 C 0.300 3.700 7 O -0.468 6.468 8 C -0.026 4.026 9 N -0.322 5.322 10 C -0.044 4.044 11 C -0.037 4.037 12 O -0.292 6.292 13 C -0.023 4.023 14 C 0.272 3.728 15 O -0.463 6.463 16 C -0.005 4.005 17 C -0.074 4.074 18 C -0.185 4.185 19 C 0.045 3.955 20 N -0.405 5.405 21 C -0.356 4.356 22 H 0.084 0.916 23 C -0.249 4.249 24 N -0.632 5.632 25 Si 0.768 3.232 26 H -0.209 1.209 27 H -0.219 1.219 28 H -0.187 1.187 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.170 0.830 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.167 0.833 40 H 0.114 0.886 41 H 0.165 0.835 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.195 0.805 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.950 -7.835 -29.244 32.195 hybrid contribution 0.332 -0.953 1.750 2.020 sum -10.618 -8.789 -27.494 30.756 Atomic orbital electron populations 1.21890 0.93516 1.01378 1.02904 1.22159 0.97013 1.00072 0.91719 0.87217 1.22861 1.02787 0.79239 0.97061 1.49063 1.62071 1.06790 1.16962 1.21437 0.77560 0.81852 0.89186 1.90684 1.54788 1.32341 1.68947 1.21463 1.04695 0.85037 0.91389 1.47277 1.15740 1.13998 1.55158 1.22493 0.89420 0.94343 0.98114 1.23245 0.84413 0.93351 1.02655 1.88175 1.15855 1.81538 1.43673 1.22833 0.95840 0.88372 0.95267 1.21615 0.81744 0.91203 0.78216 1.90720 1.44148 1.67500 1.43944 1.22280 0.97381 0.97489 0.83351 1.21652 0.95108 0.94812 0.95790 1.21827 0.97400 1.00928 0.98352 1.20890 0.94698 0.93179 0.86763 1.42840 1.57719 1.12254 1.27640 1.19073 1.18438 0.96551 1.01508 0.91644 1.25323 1.00357 1.01606 0.97650 1.69843 1.39279 1.37994 1.16094 0.85644 0.78729 0.81944 0.76853 1.20866 1.21923 1.18744 0.92329 0.90110 0.93976 0.87134 0.88266 0.86419 0.82969 0.87374 0.89147 0.92722 0.83330 0.88648 0.83495 0.90923 0.93673 0.91006 0.92702 0.95346 0.94722 0.94479 0.80523 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.92 71.98 0.57 -1.83 16 2 C -0.09 -1.67 3.31 -9.88 -0.03 -1.71 16 3 H 0.11 1.73 7.71 -2.39 -0.02 1.71 16 4 C 0.10 1.52 6.46 86.54 0.56 2.08 16 5 N -0.62 -14.80 3.32 -807.95 -2.68 -17.48 16 6 C 0.51 13.46 7.98 87.66 0.70 14.15 16 7 O -0.59 -21.20 16.70 -3.05 -0.05 -21.25 16 8 C 0.10 1.71 4.78 85.63 0.41 2.12 16 9 N -0.59 -10.94 2.32 -828.63 -1.92 -12.86 16 10 C 0.08 0.87 6.63 86.52 0.57 1.45 16 11 C 0.04 0.43 6.91 72.04 0.50 0.93 16 12 O -0.37 -5.45 10.85 -148.98 -1.62 -7.07 16 13 C 0.06 0.92 6.98 71.13 0.50 1.41 16 14 C 0.48 11.09 7.58 87.69 0.66 11.75 16 15 O -0.58 -17.89 16.36 -3.03 -0.05 -17.94 16 16 C 0.12 3.64 5.71 86.54 0.49 4.14 16 17 C -0.07 -2.04 0.73 -51.27 -0.04 -2.08 16 18 C -0.13 -3.92 7.07 71.98 0.51 -3.41 16 19 C 0.17 6.06 4.87 86.38 0.42 6.48 16 20 N -0.76 -35.38 4.93 -343.46 -1.69 -37.08 16 21 C -0.22 -12.78 10.47 84.03 0.88 -11.90 16 22 H 0.07 4.00 8.06 -2.91 -0.02 3.97 16 23 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 24 N -0.98 -63.44 13.97 21.65 0.30 -63.14 16 25 Si 0.94 47.61 27.74 68.60 1.90 49.51 16 26 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 28 H -0.26 -12.46 6.52 99.48 0.65 -11.81 16 29 H 0.06 1.08 6.84 -2.39 -0.02 1.06 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.87 6.76 -2.38 -0.02 0.85 16 32 H 0.11 1.00 7.02 -2.39 -0.02 0.98 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.12 2.06 7.04 -2.38 -0.02 2.05 16 35 H 0.15 1.21 8.04 -2.39 -0.02 1.19 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.09 1.01 8.13 -2.39 -0.02 0.99 16 38 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 39 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 2.32 7.83 -2.38 -0.02 2.31 16 43 H 0.04 1.69 7.60 -2.39 -0.02 1.67 16 44 H 0.07 2.03 6.89 -2.39 -0.02 2.01 16 45 H 0.05 1.63 6.71 -2.39 -0.02 1.62 16 46 H 0.03 1.02 6.78 -2.39 -0.02 1.00 16 47 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 48 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 49 H 0.36 16.93 4.05 -92.71 -0.38 16.55 16 50 H 0.26 15.93 8.31 -92.70 -0.77 15.15 16 Total: -1.00 -85.03 390.77 1.87 -83.16 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.51 Total: 23.54 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 7.17 Total: 20.61 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -5.99 Total: -130.56 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -1.72 Total: -46.26 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.90 Total: 49.51 kcal Total: -85.03 1.87 -83.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181745584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.725 kcal (2) G-P(sol) polarization free energy of solvation -85.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds