Wall clock time and date at job start Tue Mar 31 2020 23:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.52594 * 2 1 4 4 C 1.53192 * 109.49973 * 120.08157 * 2 1 3 5 5 N 1.46926 * 108.77820 * 174.58470 * 4 2 1 6 6 C 1.34779 * 120.63009 * 126.41120 * 5 4 2 7 7 O 1.21283 * 119.99759 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00151 * 180.02562 * 6 5 4 9 9 N 1.46493 * 109.47361 * 180.02562 * 8 6 5 10 10 C 1.46093 * 118.72900 * 269.73568 * 9 8 6 11 11 C 1.53217 * 109.82310 * 161.46770 * 10 9 8 12 12 O 1.43246 * 108.51270 * 49.53847 * 11 10 9 13 13 C 1.42967 * 112.98469 * 291.45784 * 12 11 10 14 14 C 1.33877 * 118.72982 * 90.00288 * 9 8 6 15 15 O 1.21277 * 118.83060 * 1.88036 * 14 9 8 16 16 C 1.46925 * 118.73914 * 306.39111 * 5 4 2 17 17 C 1.53191 * 108.77423 * 53.60547 * 16 5 4 18 18 C 1.53037 * 109.31499 * 305.36620 * 17 16 5 19 19 H 1.09001 * 109.46057 * 301.34715 * 18 17 16 20 20 C 1.53006 * 109.46300 * 181.37285 * 18 17 16 21 21 N 1.46502 * 109.46972 * 64.99576 * 20 18 17 22 22 C 1.36930 * 119.99688 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00301 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99834 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99866 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99819 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47685 * 89.99856 * 26 24 22 28 28 H 1.48504 * 109.46983 * 209.99747 * 26 24 22 29 29 H 1.48500 * 109.47328 * 329.99611 * 26 24 22 30 30 H 1.09001 * 109.47163 * 299.91965 * 1 2 3 31 31 H 1.08995 * 109.47442 * 59.91927 * 1 2 3 32 32 H 1.09005 * 109.47363 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.58809 * 54.79804 * 4 2 1 34 34 H 1.09002 * 109.58657 * 294.37791 * 4 2 1 35 35 H 1.09003 * 109.47023 * 300.00663 * 8 6 5 36 36 H 1.09004 * 109.46964 * 59.99901 * 8 6 5 37 37 H 1.08997 * 109.39625 * 281.77633 * 10 9 8 38 38 H 1.09000 * 109.39581 * 41.50335 * 10 9 8 39 39 H 1.08996 * 109.82403 * 289.74540 * 11 10 9 40 40 H 1.08994 * 109.66928 * 169.24048 * 11 10 9 41 41 H 1.08996 * 109.41554 * 289.49299 * 13 12 11 42 42 H 1.09007 * 109.41077 * 169.70246 * 13 12 11 43 43 H 1.08998 * 109.58340 * 173.39503 * 16 5 4 44 44 H 1.09003 * 109.58494 * 293.68068 * 16 5 4 45 45 H 1.08997 * 109.49512 * 65.31959 * 17 16 5 46 46 H 1.09005 * 109.49659 * 185.37937 * 17 16 5 47 47 H 1.08997 * 109.47033 * 185.00364 * 20 18 17 48 48 H 1.09006 * 109.46706 * 304.99953 * 20 18 17 49 49 H 0.96996 * 119.99514 * 0.02562 * 21 20 18 50 50 H 0.97001 * 119.99503 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8292 1.1695 6 6 4.2811 -0.3864 2.1782 7 8 3.7731 0.1042 3.1642 8 6 5.7806 -0.5010 2.0810 9 7 6.3919 0.0459 3.2948 10 6 6.7431 1.4636 3.3267 11 6 6.9225 1.9219 4.7777 12 8 7.7900 0.9965 5.4431 13 6 7.1965 -0.2909 5.6282 14 6 6.6120 -0.7740 4.3300 15 8 6.3303 -1.9481 4.2163 16 6 4.1053 -1.4268 -0.0308 17 6 3.5708 -0.6951 -1.2660 18 6 2.0408 -0.7232 -1.2483 19 1 1.6966 -1.7573 -1.2352 20 6 1.5036 -0.0230 -2.4983 21 7 1.8916 -0.7835 -3.6888 22 6 1.5207 -0.3454 -4.9320 23 1 0.9425 0.5609 -5.0349 24 6 1.8880 -1.0663 -6.0600 25 7 2.5930 -2.1706 -5.9346 26 14 1.3826 -0.4683 -7.7560 27 1 2.4314 0.4339 -8.2957 28 1 1.2171 -1.6328 -8.6625 29 1 0.0975 0.2694 -7.6582 30 1 -0.3633 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6052 -1.7217 1.2980 34 1 1.7637 -0.1580 2.1389 35 1 6.0588 -1.5496 1.9752 36 1 6.1321 0.0575 1.2134 37 1 7.6715 1.6190 2.7771 38 1 5.9468 2.0444 2.8612 39 1 5.9557 1.9435 5.2807 40 1 7.3664 2.9172 4.7958 41 1 6.4077 -0.2219 6.3773 42 1 7.9565 -0.9949 5.9675 43 1 5.1895 -1.3247 0.0138 44 1 3.8395 -2.4825 -0.0854 45 1 3.9159 0.3387 -1.2541 46 1 3.9338 -1.1895 -2.1671 47 1 0.4166 0.0358 -2.4429 48 1 1.9193 0.9829 -2.5582 49 1 2.4112 -1.5973 -3.5963 50 1 2.8493 -2.6745 -6.7228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184586777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:37 Heat of formation + Delta-G solvation = -95.529567 kcal Electronic energy + Delta-G solvation = -30579.362726 eV Core-core repulsion = 26414.143562 eV Total energy + Delta-G solvation = -4165.219164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23077 -40.08890 -38.19585 -37.88508 -35.64573 -35.03247 -33.65655 -32.02844 -30.81502 -30.35239 -29.64310 -27.25898 -26.93239 -25.60482 -24.27468 -23.69127 -22.55703 -21.41469 -20.25466 -19.54469 -19.03560 -18.09021 -17.62129 -17.29810 -17.05345 -16.28636 -15.89670 -15.88012 -15.30584 -14.95314 -14.83007 -14.53968 -14.43316 -13.96042 -13.88938 -13.79361 -13.54772 -13.49878 -13.35318 -12.92663 -12.65836 -12.51465 -12.21319 -12.16365 -11.94353 -11.84933 -11.73912 -11.64417 -11.02559 -10.96496 -10.92146 -10.84191 -10.42268 -10.39004 -10.22730 -10.12887 -9.96931 -9.81595 -9.65955 -9.07002 -8.88905 -8.64819 -6.93365 -5.79586 -3.07507 2.07962 2.35712 2.47308 2.97873 3.29238 3.41123 3.46684 3.48131 3.90611 4.28014 4.32342 4.55989 4.56290 4.65996 4.75340 4.78391 4.89571 4.90460 4.97537 4.98366 5.07118 5.08632 5.14934 5.25833 5.28255 5.40746 5.49162 5.54892 5.66027 5.73524 5.76877 5.83014 5.88817 5.95234 6.04106 6.19561 6.24383 6.28608 6.30872 6.41102 6.46809 6.59401 6.80226 6.89725 6.92672 7.28686 7.66994 7.67617 8.02613 8.39896 9.51063 10.09228 10.43777 11.43406 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.002243 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.454479 B =12478.605732 C =12984.066790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.072 0.928 4 C 0.118 3.882 5 N -0.605 5.605 6 C 0.503 3.497 7 O -0.543 6.543 8 C 0.089 3.911 9 N -0.587 5.587 10 C 0.082 3.918 11 C 0.044 3.956 12 O -0.371 6.371 13 C 0.053 3.947 14 C 0.494 3.506 15 O -0.539 6.539 16 C 0.104 3.896 17 C -0.125 4.125 18 C -0.089 4.089 19 H 0.073 0.927 20 C 0.157 3.843 21 N -0.732 5.732 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.024 0.976 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.581 6.800 22.101 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.004 4.004 5 N -0.339 5.339 6 C 0.289 3.711 7 O -0.421 6.421 8 C -0.037 4.037 9 N -0.320 5.320 10 C -0.041 4.041 11 C -0.033 4.033 12 O -0.289 6.289 13 C -0.027 4.027 14 C 0.281 3.719 15 O -0.416 6.416 16 C -0.019 4.019 17 C -0.163 4.163 18 C -0.108 4.108 19 H 0.091 0.909 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.149 0.851 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.042 0.958 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.300 6.594 22.521 24.891 hybrid contribution -0.444 -0.005 -1.341 1.413 sum 7.855 6.589 21.181 23.532 Atomic orbital electron populations 1.21830 0.94370 1.02243 1.02025 1.21451 0.96141 0.99803 0.94162 0.90997 1.21701 0.78654 1.00937 0.99099 1.48154 1.07146 1.60368 1.18190 1.20984 0.89634 0.77760 0.82705 1.90655 1.75282 1.45143 1.30986 1.21443 0.90514 1.03398 0.88335 1.47057 1.60291 1.09920 1.14715 1.22240 1.01856 0.80868 0.99117 1.23052 0.95698 0.93957 0.90561 1.88182 1.40720 1.21120 1.78917 1.22816 1.00315 0.85941 0.93585 1.20998 0.78397 0.86344 0.86115 1.90752 1.52262 1.16728 1.81853 1.21929 0.97728 0.97926 0.84315 1.21935 0.96189 1.01030 0.97184 1.21341 0.94656 1.00272 0.94539 0.90906 1.20752 0.96694 0.94005 0.85621 1.42375 1.65488 1.28908 1.00843 1.19219 1.27721 1.06124 0.83839 0.91304 1.24724 1.00980 0.97511 0.97811 1.69648 1.42874 1.17212 1.28569 0.86204 0.78056 0.77468 0.84549 1.21761 1.21783 1.20813 0.93054 0.91270 0.92471 0.91489 0.89378 0.86391 0.87096 0.90221 0.89372 0.91347 0.86503 0.88975 0.85094 0.90156 0.90741 0.91770 0.89105 0.95804 0.96621 0.78314 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.81 37.16 0.33 -1.43 16 2 C -0.10 -1.22 2.41 -90.50 -0.22 -1.44 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.48 5.72 -3.71 -0.02 1.45 16 5 N -0.61 -7.44 2.97 -172.77 -0.51 -7.95 16 6 C 0.50 6.54 7.76 -10.99 -0.09 6.46 16 7 O -0.54 -8.68 15.84 5.55 0.09 -8.59 16 8 C 0.09 0.91 4.14 -5.20 -0.02 0.89 16 9 N -0.59 -6.00 2.32 -175.67 -0.41 -6.40 16 10 C 0.08 0.58 6.63 -4.15 -0.03 0.55 16 11 C 0.04 0.27 6.91 37.27 0.26 0.53 16 12 O -0.37 -3.00 10.85 -35.23 -0.38 -3.38 16 13 C 0.05 0.44 6.98 35.83 0.25 0.69 16 14 C 0.49 5.76 7.58 -11.56 -0.09 5.67 16 15 O -0.54 -8.20 16.36 5.56 0.09 -8.11 16 16 C 0.10 1.15 6.34 -3.71 -0.02 1.13 16 17 C -0.13 -1.70 5.25 -26.61 -0.14 -1.84 16 18 C -0.09 -1.33 1.73 -90.58 -0.16 -1.48 16 19 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 20 C 0.16 2.98 5.41 -4.04 -0.02 2.96 16 21 N -0.73 -17.72 5.32 -59.90 -0.32 -18.04 16 22 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 26 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.89 6.30 -51.93 -0.33 0.56 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.17 7.01 -51.93 -0.36 0.81 16 35 H 0.12 1.26 7.03 -51.93 -0.37 0.89 16 36 H 0.11 0.82 7.59 -51.93 -0.39 0.43 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.60 8.13 -51.93 -0.42 0.17 16 39 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 40 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 47 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 48 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.38 9.65 6.85 -40.82 -0.28 9.37 16 50 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -35.16 392.83 -8.23 -43.39 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -8.19 Total: 5.99 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.21 Total: 6.99 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.52 Total: -59.28 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.20 Total: -20.09 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.16 -8.23 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184586777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.140 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds