Wall clock time and date at job start Tue Mar 31 2020 23:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.52594 * 2 1 4 4 C 1.53192 * 109.49973 * 120.08157 * 2 1 3 5 5 N 1.46926 * 108.77820 * 174.58470 * 4 2 1 6 6 C 1.34779 * 120.63009 * 126.41120 * 5 4 2 7 7 O 1.21283 * 119.99759 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00151 * 180.02562 * 6 5 4 9 9 N 1.46493 * 109.47361 * 180.02562 * 8 6 5 10 10 C 1.46093 * 118.72900 * 269.73568 * 9 8 6 11 11 C 1.53217 * 109.82310 * 161.46770 * 10 9 8 12 12 O 1.43246 * 108.51270 * 49.53847 * 11 10 9 13 13 C 1.42967 * 112.98469 * 291.45784 * 12 11 10 14 14 C 1.33877 * 118.72982 * 90.00288 * 9 8 6 15 15 O 1.21277 * 118.83060 * 1.88036 * 14 9 8 16 16 C 1.46925 * 118.73914 * 306.39111 * 5 4 2 17 17 C 1.53191 * 108.77423 * 53.60547 * 16 5 4 18 18 C 1.53037 * 109.31499 * 305.36620 * 17 16 5 19 19 H 1.09001 * 109.46057 * 301.34715 * 18 17 16 20 20 C 1.53006 * 109.46300 * 181.37285 * 18 17 16 21 21 N 1.46502 * 109.46972 * 64.99576 * 20 18 17 22 22 C 1.36930 * 119.99688 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00301 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99834 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99866 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99819 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47685 * 89.99856 * 26 24 22 28 28 H 1.48504 * 109.46983 * 209.99747 * 26 24 22 29 29 H 1.48500 * 109.47328 * 329.99611 * 26 24 22 30 30 H 1.09001 * 109.47163 * 299.91965 * 1 2 3 31 31 H 1.08995 * 109.47442 * 59.91927 * 1 2 3 32 32 H 1.09005 * 109.47363 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.58809 * 54.79804 * 4 2 1 34 34 H 1.09002 * 109.58657 * 294.37791 * 4 2 1 35 35 H 1.09003 * 109.47023 * 300.00663 * 8 6 5 36 36 H 1.09004 * 109.46964 * 59.99901 * 8 6 5 37 37 H 1.08997 * 109.39625 * 281.77633 * 10 9 8 38 38 H 1.09000 * 109.39581 * 41.50335 * 10 9 8 39 39 H 1.08996 * 109.82403 * 289.74540 * 11 10 9 40 40 H 1.08994 * 109.66928 * 169.24048 * 11 10 9 41 41 H 1.08996 * 109.41554 * 289.49299 * 13 12 11 42 42 H 1.09007 * 109.41077 * 169.70246 * 13 12 11 43 43 H 1.08998 * 109.58340 * 173.39503 * 16 5 4 44 44 H 1.09003 * 109.58494 * 293.68068 * 16 5 4 45 45 H 1.08997 * 109.49512 * 65.31959 * 17 16 5 46 46 H 1.09005 * 109.49659 * 185.37937 * 17 16 5 47 47 H 1.08997 * 109.47033 * 185.00364 * 20 18 17 48 48 H 1.09006 * 109.46706 * 304.99953 * 20 18 17 49 49 H 0.96996 * 119.99514 * 0.02562 * 21 20 18 50 50 H 0.97001 * 119.99503 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8292 1.1695 6 6 4.2811 -0.3864 2.1782 7 8 3.7731 0.1042 3.1642 8 6 5.7806 -0.5010 2.0810 9 7 6.3919 0.0459 3.2948 10 6 6.7431 1.4636 3.3267 11 6 6.9225 1.9219 4.7777 12 8 7.7900 0.9965 5.4431 13 6 7.1965 -0.2909 5.6282 14 6 6.6120 -0.7740 4.3300 15 8 6.3303 -1.9481 4.2163 16 6 4.1053 -1.4268 -0.0308 17 6 3.5708 -0.6951 -1.2660 18 6 2.0408 -0.7232 -1.2483 19 1 1.6966 -1.7573 -1.2352 20 6 1.5036 -0.0230 -2.4983 21 7 1.8916 -0.7835 -3.6888 22 6 1.5207 -0.3454 -4.9320 23 1 0.9425 0.5609 -5.0349 24 6 1.8880 -1.0663 -6.0600 25 7 2.5930 -2.1706 -5.9346 26 14 1.3826 -0.4683 -7.7560 27 1 2.4314 0.4339 -8.2957 28 1 1.2171 -1.6328 -8.6625 29 1 0.0975 0.2694 -7.6582 30 1 -0.3633 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6052 -1.7217 1.2980 34 1 1.7637 -0.1580 2.1389 35 1 6.0588 -1.5496 1.9752 36 1 6.1321 0.0575 1.2134 37 1 7.6715 1.6190 2.7771 38 1 5.9468 2.0444 2.8612 39 1 5.9557 1.9435 5.2807 40 1 7.3664 2.9172 4.7958 41 1 6.4077 -0.2219 6.3773 42 1 7.9565 -0.9949 5.9675 43 1 5.1895 -1.3247 0.0138 44 1 3.8395 -2.4825 -0.0854 45 1 3.9159 0.3387 -1.2541 46 1 3.9338 -1.1895 -2.1671 47 1 0.4166 0.0358 -2.4429 48 1 1.9193 0.9829 -2.5582 49 1 2.4112 -1.5973 -3.5963 50 1 2.8493 -2.6745 -6.7228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184586777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:36 Heat of formation + Delta-G solvation = -119.943091 kcal Electronic energy + Delta-G solvation = -30580.421376 eV Core-core repulsion = 26414.143562 eV Total energy + Delta-G solvation = -4166.277814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06033 -41.06183 -39.23508 -38.73074 -36.62889 -36.36406 -35.05557 -33.47322 -32.01122 -31.43174 -30.45650 -28.39365 -28.08718 -26.55206 -25.45687 -24.84558 -23.78766 -22.75173 -21.32713 -20.51222 -19.91428 -19.15433 -18.78893 -18.43663 -18.09386 -17.12810 -16.84056 -16.68300 -16.58029 -16.16658 -15.81021 -15.64008 -15.52836 -15.30312 -15.15629 -14.88460 -14.60812 -14.46472 -14.16483 -14.11897 -13.98272 -13.83945 -13.15182 -13.09483 -12.94280 -12.92033 -12.81458 -12.79236 -12.68406 -12.32368 -12.18154 -11.97908 -11.88864 -11.64910 -11.64556 -11.50362 -11.19400 -11.12735 -10.87422 -10.56891 -9.89546 -9.70623 -8.95107 -7.93752 -5.21022 1.24040 1.47509 1.48275 1.48959 1.57406 1.61435 2.05917 2.57008 2.74468 3.25229 3.38609 3.39961 3.67732 3.72937 3.76903 3.82999 3.98967 4.00071 4.09601 4.18573 4.21448 4.28135 4.31194 4.37202 4.39266 4.46899 4.51646 4.62662 4.64887 4.69870 4.74485 4.77883 4.78831 4.84194 4.98490 5.05367 5.09132 5.12849 5.19843 5.28496 5.35291 5.47873 5.52975 5.58989 5.73191 6.18615 6.29069 6.29978 6.84070 7.02822 7.36162 8.13016 8.36720 9.29624 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.002243 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.454479 B =12478.605732 C =12984.066790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.605 5.605 6 C 0.500 3.500 7 O -0.576 6.576 8 C 0.089 3.911 9 N -0.588 5.588 10 C 0.077 3.923 11 C 0.042 3.958 12 O -0.377 6.377 13 C 0.058 3.942 14 C 0.483 3.517 15 O -0.584 6.584 16 C 0.110 3.890 17 C -0.118 4.118 18 C -0.080 4.080 19 H 0.064 0.936 20 C 0.157 3.843 21 N -0.742 5.742 22 C -0.243 4.243 23 H 0.072 0.928 24 C -0.073 4.073 25 N -0.967 5.967 26 Si 0.969 3.031 27 H -0.287 1.287 28 H -0.296 1.296 29 H -0.272 1.272 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.144 0.856 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.147 0.853 41 H 0.102 0.898 42 H 0.145 0.855 43 H 0.109 0.891 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.024 0.976 48 H 0.014 0.986 49 H 0.376 0.624 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.206 8.257 22.697 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.001 4.001 5 N -0.337 5.337 6 C 0.288 3.712 7 O -0.456 6.456 8 C -0.038 4.038 9 N -0.320 5.320 10 C -0.045 4.045 11 C -0.034 4.034 12 O -0.295 6.295 13 C -0.022 4.022 14 C 0.272 3.728 15 O -0.465 6.465 16 C -0.012 4.012 17 C -0.157 4.157 18 C -0.099 4.099 19 H 0.083 0.917 20 C 0.031 3.969 21 N -0.385 5.385 22 C -0.375 4.375 23 H 0.090 0.910 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.798 3.202 27 H -0.214 1.214 28 H -0.223 1.223 29 H -0.197 1.197 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.161 0.839 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.165 0.835 41 H 0.119 0.881 42 H 0.163 0.837 43 H 0.127 0.873 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.042 0.958 48 H 0.032 0.968 49 H 0.208 0.792 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.916 8.111 23.126 26.079 hybrid contribution -0.685 -0.386 -1.494 1.688 sum 8.232 7.726 21.632 24.400 Atomic orbital electron populations 1.21807 0.93669 1.02443 1.02346 1.21323 0.96666 0.99294 0.93032 0.91144 1.21636 0.79066 1.00998 0.98420 1.48218 1.07080 1.60049 1.18384 1.21484 0.90752 0.76881 0.82104 1.90637 1.76088 1.46703 1.32201 1.21543 0.88579 1.03933 0.89710 1.47268 1.59307 1.11125 1.14305 1.22499 1.02901 0.79024 1.00096 1.23241 0.95570 0.94858 0.89744 1.88183 1.41212 1.20998 1.79074 1.22836 1.00919 0.86462 0.91950 1.21653 0.77932 0.85956 0.87241 1.90720 1.54427 1.18610 1.82781 1.21936 0.99245 0.97476 0.82588 1.21817 0.95123 1.01256 0.97480 1.21228 0.95623 0.99485 0.93568 0.91712 1.20882 0.96695 0.93679 0.85649 1.42554 1.65309 1.29050 1.01547 1.19591 1.26779 1.05869 0.85219 0.91039 1.25491 1.01775 0.98006 1.01321 1.69793 1.44438 1.18459 1.29108 0.85204 0.78030 0.76750 0.80168 1.21396 1.22279 1.19712 0.91331 0.92312 0.92361 0.91057 0.89939 0.86771 0.83881 0.88129 0.88968 0.92038 0.83504 0.88077 0.83720 0.87337 0.90479 0.91511 0.91324 0.95808 0.96818 0.79191 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.81 71.98 0.63 -2.65 16 2 C -0.08 -2.03 2.41 -10.72 -0.03 -2.05 16 3 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 4 C 0.12 2.89 5.72 86.36 0.49 3.38 16 5 N -0.60 -14.05 2.97 -818.90 -2.43 -16.48 16 6 C 0.50 12.39 7.76 87.66 0.68 13.07 16 7 O -0.58 -18.03 15.84 -3.04 -0.05 -18.07 16 8 C 0.09 1.66 4.14 85.63 0.35 2.01 16 9 N -0.59 -11.14 2.32 -828.60 -1.92 -13.06 16 10 C 0.08 0.89 6.63 86.53 0.57 1.47 16 11 C 0.04 0.43 6.91 72.05 0.50 0.93 16 12 O -0.38 -5.32 10.85 -148.98 -1.62 -6.94 16 13 C 0.06 0.89 6.98 71.12 0.50 1.38 16 14 C 0.48 10.94 7.58 87.68 0.66 11.60 16 15 O -0.58 -17.88 16.36 -3.02 -0.05 -17.93 16 16 C 0.11 2.27 6.34 86.36 0.55 2.82 16 17 C -0.12 -3.12 5.25 30.67 0.16 -2.96 16 18 C -0.08 -2.34 1.73 -10.76 -0.02 -2.36 16 19 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 20 C 0.16 5.94 5.41 86.38 0.47 6.41 16 21 N -0.74 -36.14 5.32 -343.43 -1.83 -37.97 16 22 C -0.24 -13.27 9.99 84.04 0.84 -12.43 16 23 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 25 N -0.97 -57.77 13.06 21.65 0.28 -57.49 16 26 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 27 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 29 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.46 6.30 -2.39 -0.02 1.44 16 32 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.08 2.11 7.01 -2.39 -0.02 2.09 16 35 H 0.11 2.29 7.03 -2.39 -0.02 2.27 16 36 H 0.14 1.70 7.59 -2.38 -0.02 1.68 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 1.03 8.13 -2.39 -0.02 1.01 16 39 H 0.06 0.72 8.09 -2.39 -0.02 0.70 16 40 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.15 1.76 8.14 -2.38 -0.02 1.75 16 43 H 0.11 1.66 5.93 -2.39 -0.01 1.64 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 2.16 7.15 -2.38 -0.02 2.14 16 47 H 0.02 0.92 6.14 -2.39 -0.01 0.90 16 48 H 0.01 0.53 8.14 -2.38 -0.02 0.52 16 49 H 0.38 19.25 6.85 -92.71 -0.63 18.61 16 50 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -76.07 392.83 1.55 -74.51 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.31 Total: 29.03 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.83 Total: 16.95 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -5.90 Total: -125.00 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.71 Total: -42.94 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -76.07 1.55 -74.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184586777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.430 kcal (2) G-P(sol) polarization free energy of solvation -76.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds