Wall clock time and date at job start Tue Mar 31 2020 23:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.49963 * 2 1 4 4 C 1.52760 * 109.38813 * 120.08367 * 2 1 3 5 5 N 1.46923 * 109.01281 * 65.51589 * 4 2 1 6 6 C 1.34779 * 120.63009 * 233.58737 * 5 4 2 7 7 O 1.21282 * 119.99880 * 359.71976 * 6 5 4 8 8 C 1.50705 * 119.99946 * 179.71288 * 6 5 4 9 9 N 1.46497 * 109.46810 * 179.97438 * 8 6 5 10 10 C 1.46464 * 118.66826 * 270.04150 * 9 8 6 11 11 C 1.53020 * 109.71893 * 161.65954 * 10 9 8 12 12 O 1.43247 * 108.80480 * 49.13476 * 11 10 9 13 13 C 1.42973 * 112.98467 * 291.55009 * 12 11 10 14 14 C 1.33875 * 118.72536 * 90.00654 * 9 8 6 15 15 O 1.21275 * 118.83463 * 1.90380 * 14 9 8 16 16 C 1.46927 * 118.73799 * 53.30729 * 5 4 2 17 17 C 1.53195 * 108.77551 * 306.64516 * 16 5 4 18 18 C 1.53039 * 109.30845 * 54.63773 * 17 16 5 19 19 H 1.08995 * 109.46667 * 58.65155 * 18 17 16 20 20 C 1.53004 * 109.45724 * 178.62486 * 18 17 16 21 21 N 1.46492 * 109.47196 * 294.99852 * 20 18 17 22 22 C 1.36937 * 120.00110 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00296 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00262 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99718 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99987 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47272 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47086 * 120.00299 * 26 24 22 29 29 H 1.48505 * 109.47295 * 239.99754 * 26 24 22 30 30 H 1.09001 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47408 * 300.06114 * 1 2 3 32 32 H 1.08996 * 109.47485 * 60.06055 * 1 2 3 33 33 H 1.09005 * 109.50748 * 305.63227 * 4 2 1 34 34 H 1.09000 * 109.43427 * 185.35313 * 4 2 1 35 35 H 1.09001 * 109.46536 * 60.00419 * 8 6 5 36 36 H 1.08994 * 109.47287 * 300.00093 * 8 6 5 37 37 H 1.08999 * 109.58627 * 41.52917 * 10 9 8 38 38 H 1.08995 * 109.40259 * 281.68146 * 10 9 8 39 39 H 1.09002 * 109.60614 * 289.29397 * 11 10 9 40 40 H 1.08997 * 109.60240 * 168.97091 * 11 10 9 41 41 H 1.09001 * 109.40964 * 169.70391 * 13 12 11 42 42 H 1.08996 * 109.41586 * 289.49646 * 13 12 11 43 43 H 1.08994 * 109.58319 * 66.43871 * 16 5 4 44 44 H 1.09003 * 109.58527 * 186.71493 * 16 5 4 45 45 H 1.09000 * 109.49380 * 174.58221 * 17 16 5 46 46 H 1.08998 * 109.49701 * 294.65331 * 17 16 5 47 47 H 1.09005 * 109.47033 * 55.00109 * 20 18 17 48 48 H 1.09000 * 109.47285 * 174.99880 * 20 18 17 49 49 H 0.96995 * 120.00356 * 359.97438 * 21 20 18 50 50 H 0.97001 * 120.00410 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0371 -0.7223 1.2469 5 7 1.6529 -2.1383 1.1692 6 6 0.9759 -2.7224 2.1777 7 8 0.6825 -2.0797 3.1634 8 6 0.5833 -4.1742 2.0803 9 7 -0.1367 -4.5677 3.2939 10 6 0.6293 -5.0930 4.4263 11 6 -0.2114 -5.0085 5.7020 12 8 -1.5050 -5.5653 5.4402 13 6 -2.2833 -4.7709 4.5416 14 6 -1.4683 -4.4325 3.3244 15 8 -2.0373 -4.0220 2.3352 16 6 2.0154 -2.9038 -0.0313 17 6 1.5036 -2.1556 -1.2663 18 6 2.0408 -0.7227 -1.2486 19 1 3.1305 -0.7435 -1.2358 20 6 1.5597 0.0175 -2.4983 21 7 2.1467 -0.6019 -3.6890 22 6 1.8580 -0.1053 -4.9320 23 1 1.1972 0.7428 -5.0347 24 6 2.4138 -0.6925 -6.0604 25 7 3.2187 -1.7263 -5.9354 26 14 2.0193 -0.0155 -7.7560 27 1 1.0973 1.1412 -7.6250 28 1 3.2740 0.4247 -8.4175 29 1 1.3737 -1.0737 -8.5738 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3634 0.5129 -0.8905 33 1 1.5933 -0.2714 2.1345 34 1 3.1228 -0.6405 1.2970 35 1 1.4790 -4.7864 1.9751 36 1 -0.0600 -4.3192 1.2125 37 1 1.5404 -4.5083 4.5538 38 1 0.8923 -6.1332 4.2342 39 1 -0.3159 -3.9661 6.0028 40 1 0.2748 -5.5719 6.4984 41 1 -3.1701 -5.3285 4.2404 42 1 -2.5872 -3.8511 5.0414 43 1 3.0993 -3.0036 -0.0876 44 1 1.5593 -3.8928 0.0144 45 1 1.8487 -2.6624 -2.1675 46 1 0.4139 -2.1363 -1.2543 47 1 0.4727 -0.0386 -2.5579 48 1 1.8671 1.0618 -2.4429 49 1 2.7405 -1.3633 -3.5969 50 1 3.6069 -2.1369 -6.7239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184586779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:40 Heat of formation + Delta-G solvation = -91.991020 kcal Electronic energy + Delta-G solvation = -30907.700294 eV Core-core repulsion = 26742.634573 eV Total energy + Delta-G solvation = -4165.065721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22360 -40.18210 -38.22254 -37.88436 -35.61385 -34.97304 -33.46454 -31.84802 -30.78899 -30.33520 -29.57392 -27.23369 -26.99604 -25.68288 -24.26308 -23.63601 -23.01107 -21.51445 -20.30563 -19.29741 -18.37732 -18.08646 -17.67029 -17.33992 -16.94297 -16.29663 -15.90415 -15.75853 -15.34856 -14.97929 -14.83016 -14.67385 -14.26984 -14.03356 -13.90718 -13.78933 -13.60459 -13.46329 -13.39900 -12.93086 -12.51336 -12.50240 -12.34232 -12.15568 -12.10503 -11.74339 -11.55532 -11.36352 -11.05046 -10.95301 -10.92248 -10.77666 -10.37052 -10.31454 -10.19117 -10.03906 -9.94343 -9.79927 -9.64248 -9.05394 -8.86671 -8.62813 -6.90764 -5.77441 -3.05018 2.09764 2.37191 2.48665 3.00093 3.29199 3.42931 3.49081 3.50939 3.91466 4.28072 4.32729 4.55629 4.58662 4.65642 4.77835 4.78100 4.89963 4.95043 4.97818 5.01749 5.10350 5.13047 5.15361 5.23762 5.26764 5.42353 5.53165 5.60577 5.71774 5.74709 5.79417 5.85054 5.89420 6.05691 6.09549 6.21184 6.30164 6.31294 6.40017 6.47983 6.48759 6.66639 6.81541 6.93548 6.95166 7.30630 7.70011 7.70975 8.04517 8.42234 9.53481 10.11758 10.46394 11.45731 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.002293 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.281336 B =12206.211058 C =12491.599175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.119 3.881 5 N -0.602 5.602 6 C 0.503 3.497 7 O -0.543 6.543 8 C 0.089 3.911 9 N -0.588 5.588 10 C 0.084 3.916 11 C 0.044 3.956 12 O -0.371 6.371 13 C 0.053 3.947 14 C 0.493 3.507 15 O -0.535 6.535 16 C 0.104 3.896 17 C -0.129 4.129 18 C -0.087 4.087 19 H 0.071 0.929 20 C 0.158 3.842 21 N -0.732 5.732 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.132 0.868 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.022 0.978 48 H 0.017 0.983 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 -8.172 25.328 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.004 4.004 5 N -0.336 5.336 6 C 0.289 3.711 7 O -0.420 6.420 8 C -0.037 4.037 9 N -0.322 5.322 10 C -0.039 4.039 11 C -0.033 4.033 12 O -0.289 6.289 13 C -0.027 4.027 14 C 0.281 3.719 15 O -0.411 6.411 16 C -0.018 4.018 17 C -0.167 4.167 18 C -0.106 4.106 19 H 0.090 0.910 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.584 5.584 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.040 0.960 48 H 0.035 0.965 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.121 -7.699 25.310 26.774 hybrid contribution 0.342 0.399 -1.263 1.368 sum -3.779 -7.300 24.046 25.413 Atomic orbital electron populations 1.21854 0.94804 1.02101 1.01389 1.21403 0.96744 0.99469 0.94224 0.90041 1.21578 0.99321 0.80205 0.99270 1.48118 1.55749 1.11656 1.18061 1.20969 0.77442 0.89813 0.82857 1.90654 1.54703 1.65203 1.31453 1.21440 0.98951 0.93182 0.90129 1.47148 1.06264 1.63338 1.15424 1.22249 0.95909 0.99923 0.85851 1.22998 0.83616 1.00455 0.96257 1.88183 1.27365 1.48554 1.64807 1.22827 0.94547 0.98252 0.87044 1.20990 0.82506 0.77681 0.90755 1.90776 1.69719 1.45663 1.34965 1.21915 1.00639 0.94745 0.84537 1.21976 1.01590 0.96070 0.97050 1.21291 1.00177 0.94628 0.94527 0.91036 1.20716 0.95969 0.94635 0.85630 1.42381 1.56714 1.37654 1.00871 1.19279 1.22814 1.10767 0.83844 0.91240 1.24719 1.00154 0.98422 0.97806 1.69656 1.35822 1.24502 1.28403 0.86130 0.77401 0.78016 0.84746 1.20602 1.21918 1.21887 0.92528 0.93480 0.91958 0.89359 0.91565 0.87332 0.86293 0.89418 0.90326 0.91406 0.86575 0.85072 0.88967 0.90827 0.90211 0.89276 0.91194 0.96029 0.96500 0.78334 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.38 37.16 0.31 -1.72 16 2 C -0.10 -1.31 2.71 -90.72 -0.25 -1.55 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.45 5.79 -3.93 -0.02 1.43 16 5 N -0.60 -7.21 2.42 -173.03 -0.42 -7.63 16 6 C 0.50 6.41 7.76 -10.98 -0.09 6.32 16 7 O -0.54 -8.53 15.84 5.56 0.09 -8.44 16 8 C 0.09 0.90 4.14 -5.19 -0.02 0.88 16 9 N -0.59 -5.95 2.33 -175.49 -0.41 -6.36 16 10 C 0.08 0.55 6.65 -4.05 -0.03 0.52 16 11 C 0.04 0.26 6.88 37.17 0.26 0.52 16 12 O -0.37 -2.99 10.86 -35.23 -0.38 -3.37 16 13 C 0.05 0.45 6.98 35.83 0.25 0.70 16 14 C 0.49 5.87 7.58 -11.56 -0.09 5.78 16 15 O -0.53 -8.43 16.36 5.56 0.09 -8.34 16 16 C 0.10 1.14 6.35 -3.71 -0.02 1.12 16 17 C -0.13 -1.84 4.90 -26.61 -0.13 -1.97 16 18 C -0.09 -1.33 1.96 -90.57 -0.18 -1.51 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 20 C 0.16 3.11 5.18 -4.04 -0.02 3.09 16 21 N -0.73 -18.09 5.32 -59.91 -0.32 -18.41 16 22 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 25 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 26 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H 0.06 0.86 5.98 -51.93 -0.31 0.55 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.91 6.58 -51.93 -0.34 0.57 16 33 H 0.09 1.17 7.01 -51.93 -0.36 0.80 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.11 0.73 7.84 -51.93 -0.41 0.33 16 36 H 0.12 1.33 6.79 -51.93 -0.35 0.98 16 37 H 0.09 0.53 8.13 -51.93 -0.42 0.11 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 40 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.71 5.93 -51.93 -0.31 0.41 16 45 H 0.09 1.46 7.15 -51.93 -0.37 1.08 16 46 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 47 H 0.02 0.44 6.74 -51.93 -0.35 0.09 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.38 9.78 6.85 -40.82 -0.28 9.50 16 50 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -35.68 388.81 -8.09 -43.77 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.03 Total: 6.33 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.27 Total: 6.34 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.42 Total: -59.56 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.20 Total: -20.15 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.68 -8.09 -43.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184586779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.220 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds