Wall clock time and date at job start Tue Mar 31 2020 23:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.49963 * 2 1 4 4 C 1.52760 * 109.38813 * 120.08367 * 2 1 3 5 5 N 1.46923 * 109.01281 * 65.51589 * 4 2 1 6 6 C 1.34779 * 120.63009 * 233.58737 * 5 4 2 7 7 O 1.21282 * 119.99880 * 359.71976 * 6 5 4 8 8 C 1.50705 * 119.99946 * 179.71288 * 6 5 4 9 9 N 1.46497 * 109.46810 * 179.97438 * 8 6 5 10 10 C 1.46464 * 118.66826 * 270.04150 * 9 8 6 11 11 C 1.53020 * 109.71893 * 161.65954 * 10 9 8 12 12 O 1.43247 * 108.80480 * 49.13476 * 11 10 9 13 13 C 1.42973 * 112.98467 * 291.55009 * 12 11 10 14 14 C 1.33875 * 118.72536 * 90.00654 * 9 8 6 15 15 O 1.21275 * 118.83463 * 1.90380 * 14 9 8 16 16 C 1.46927 * 118.73799 * 53.30729 * 5 4 2 17 17 C 1.53195 * 108.77551 * 306.64516 * 16 5 4 18 18 C 1.53039 * 109.30845 * 54.63773 * 17 16 5 19 19 H 1.08995 * 109.46667 * 58.65155 * 18 17 16 20 20 C 1.53004 * 109.45724 * 178.62486 * 18 17 16 21 21 N 1.46492 * 109.47196 * 294.99852 * 20 18 17 22 22 C 1.36937 * 120.00110 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00296 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00262 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99718 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99987 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47272 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47086 * 120.00299 * 26 24 22 29 29 H 1.48505 * 109.47295 * 239.99754 * 26 24 22 30 30 H 1.09001 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47408 * 300.06114 * 1 2 3 32 32 H 1.08996 * 109.47485 * 60.06055 * 1 2 3 33 33 H 1.09005 * 109.50748 * 305.63227 * 4 2 1 34 34 H 1.09000 * 109.43427 * 185.35313 * 4 2 1 35 35 H 1.09001 * 109.46536 * 60.00419 * 8 6 5 36 36 H 1.08994 * 109.47287 * 300.00093 * 8 6 5 37 37 H 1.08999 * 109.58627 * 41.52917 * 10 9 8 38 38 H 1.08995 * 109.40259 * 281.68146 * 10 9 8 39 39 H 1.09002 * 109.60614 * 289.29397 * 11 10 9 40 40 H 1.08997 * 109.60240 * 168.97091 * 11 10 9 41 41 H 1.09001 * 109.40964 * 169.70391 * 13 12 11 42 42 H 1.08996 * 109.41586 * 289.49646 * 13 12 11 43 43 H 1.08994 * 109.58319 * 66.43871 * 16 5 4 44 44 H 1.09003 * 109.58527 * 186.71493 * 16 5 4 45 45 H 1.09000 * 109.49380 * 174.58221 * 17 16 5 46 46 H 1.08998 * 109.49701 * 294.65331 * 17 16 5 47 47 H 1.09005 * 109.47033 * 55.00109 * 20 18 17 48 48 H 1.09000 * 109.47285 * 174.99880 * 20 18 17 49 49 H 0.96995 * 120.00356 * 359.97438 * 21 20 18 50 50 H 0.97001 * 120.00410 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0371 -0.7223 1.2469 5 7 1.6529 -2.1383 1.1692 6 6 0.9759 -2.7224 2.1777 7 8 0.6825 -2.0797 3.1634 8 6 0.5833 -4.1742 2.0803 9 7 -0.1367 -4.5677 3.2939 10 6 0.6293 -5.0930 4.4263 11 6 -0.2114 -5.0085 5.7020 12 8 -1.5050 -5.5653 5.4402 13 6 -2.2833 -4.7709 4.5416 14 6 -1.4683 -4.4325 3.3244 15 8 -2.0373 -4.0220 2.3352 16 6 2.0154 -2.9038 -0.0313 17 6 1.5036 -2.1556 -1.2663 18 6 2.0408 -0.7227 -1.2486 19 1 3.1305 -0.7435 -1.2358 20 6 1.5597 0.0175 -2.4983 21 7 2.1467 -0.6019 -3.6890 22 6 1.8580 -0.1053 -4.9320 23 1 1.1972 0.7428 -5.0347 24 6 2.4138 -0.6925 -6.0604 25 7 3.2187 -1.7263 -5.9354 26 14 2.0193 -0.0155 -7.7560 27 1 1.0973 1.1412 -7.6250 28 1 3.2740 0.4247 -8.4175 29 1 1.3737 -1.0737 -8.5738 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3634 0.5129 -0.8905 33 1 1.5933 -0.2714 2.1345 34 1 3.1228 -0.6405 1.2970 35 1 1.4790 -4.7864 1.9751 36 1 -0.0600 -4.3192 1.2125 37 1 1.5404 -4.5083 4.5538 38 1 0.8923 -6.1332 4.2342 39 1 -0.3159 -3.9661 6.0028 40 1 0.2748 -5.5719 6.4984 41 1 -3.1701 -5.3285 4.2404 42 1 -2.5872 -3.8511 5.0414 43 1 3.0993 -3.0036 -0.0876 44 1 1.5593 -3.8928 0.0144 45 1 1.8487 -2.6624 -2.1675 46 1 0.4139 -2.1363 -1.2543 47 1 0.4727 -0.0386 -2.5579 48 1 1.8671 1.0618 -2.4429 49 1 2.7405 -1.3633 -3.5969 50 1 3.6069 -2.1369 -6.7239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184586779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:39 Heat of formation + Delta-G solvation = -116.854698 kcal Electronic energy + Delta-G solvation = -30908.778464 eV Core-core repulsion = 26742.634573 eV Total energy + Delta-G solvation = -4166.143891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.06480 -41.15308 -39.27296 -38.72883 -36.62835 -36.33402 -34.90326 -33.31060 -31.96819 -31.41075 -30.39436 -28.51525 -28.13625 -26.65938 -25.43577 -24.82915 -24.19341 -22.95680 -21.32229 -20.09378 -19.64830 -19.03489 -18.78254 -18.40909 -18.11305 -17.13048 -16.84893 -16.67668 -16.54591 -16.16331 -15.91585 -15.61475 -15.51362 -15.40449 -15.17858 -14.92597 -14.64153 -14.50978 -14.30710 -14.07643 -13.90865 -13.73011 -13.56769 -13.06258 -12.99424 -12.85131 -12.80199 -12.72113 -12.48397 -12.30786 -12.16232 -12.05675 -11.92705 -11.63873 -11.58191 -11.44327 -11.25158 -11.06869 -10.90478 -10.56387 -9.87514 -9.65560 -8.96986 -7.95379 -5.22589 1.24623 1.46787 1.47104 1.51614 1.57004 1.62954 2.10066 2.55636 2.74557 3.25930 3.38200 3.40894 3.70200 3.73396 3.77301 3.83172 3.99564 4.04875 4.10676 4.18490 4.19833 4.28719 4.31227 4.38164 4.39675 4.45461 4.47825 4.62503 4.67601 4.71237 4.73783 4.78549 4.81400 4.83106 4.95992 5.04375 5.08215 5.15119 5.16910 5.19064 5.31688 5.48280 5.52547 5.60216 5.73440 6.19295 6.28169 6.33621 6.86042 7.07102 7.34925 8.11071 8.35872 9.28147 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.002293 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.281336 B =12206.211058 C =12491.599175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.092 0.908 4 C 0.122 3.878 5 N -0.601 5.601 6 C 0.500 3.500 7 O -0.576 6.576 8 C 0.088 3.912 9 N -0.589 5.589 10 C 0.078 3.922 11 C 0.041 3.959 12 O -0.376 6.376 13 C 0.058 3.942 14 C 0.481 3.519 15 O -0.586 6.586 16 C 0.111 3.889 17 C -0.124 4.124 18 C -0.076 4.076 19 H 0.074 0.926 20 C 0.158 3.842 21 N -0.741 5.741 22 C -0.244 4.244 23 H 0.069 0.931 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.969 3.031 27 H -0.270 1.270 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.014 0.986 48 H 0.015 0.985 49 H 0.377 0.623 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 -8.886 26.799 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.110 0.890 4 C -0.001 4.001 5 N -0.333 5.333 6 C 0.288 3.712 7 O -0.456 6.456 8 C -0.038 4.038 9 N -0.321 5.321 10 C -0.043 4.043 11 C -0.036 4.036 12 O -0.294 6.294 13 C -0.021 4.021 14 C 0.271 3.729 15 O -0.466 6.466 16 C -0.011 4.011 17 C -0.162 4.162 18 C -0.095 4.095 19 H 0.093 0.907 20 C 0.032 3.968 21 N -0.384 5.384 22 C -0.376 4.376 23 H 0.087 0.913 24 C -0.265 4.265 25 N -0.616 5.616 26 Si 0.798 3.202 27 H -0.195 1.195 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.166 0.834 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.032 0.968 48 H 0.033 0.967 49 H 0.210 0.790 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.269 -8.410 26.823 28.300 hybrid contribution 0.078 0.662 -1.671 1.799 sum -3.191 -7.748 25.152 26.511 Atomic orbital electron populations 1.21779 0.95596 1.01067 1.01089 1.21343 0.95883 1.00047 0.93744 0.88982 1.21537 1.00328 0.80265 0.97922 1.48163 1.55428 1.11629 1.18117 1.21426 0.76657 0.90718 0.82355 1.90637 1.55925 1.66178 1.32814 1.21549 1.00187 0.92100 0.90002 1.47364 1.06094 1.62298 1.16307 1.22538 0.95802 1.01158 0.84841 1.23219 0.82849 1.00665 0.96857 1.88183 1.28252 1.48692 1.64319 1.22813 0.94439 0.98936 0.85942 1.21650 0.83295 0.76936 0.91056 1.90743 1.70860 1.48196 1.36849 1.21938 1.01835 0.95020 0.82317 1.21859 1.00632 0.95718 0.98024 1.21166 1.00198 0.94929 0.93214 0.90739 1.20835 0.95243 0.94765 0.85986 1.42537 1.56737 1.37611 1.01486 1.19619 1.22174 1.10481 0.85310 0.91270 1.25482 1.00645 0.99097 1.01274 1.69789 1.37032 1.25762 1.29060 0.85137 0.77138 0.77526 0.80350 1.19503 1.21890 1.21988 0.93919 0.93033 0.92917 0.90150 0.89625 0.83379 0.87505 0.88521 0.88016 0.92176 0.83370 0.83936 0.88196 0.88886 0.87842 0.91431 0.92659 0.96782 0.96719 0.79042 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.38 71.98 0.60 -3.29 16 2 C -0.09 -2.31 2.71 -10.86 -0.03 -2.34 16 3 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 4 C 0.12 2.77 5.79 86.22 0.50 3.27 16 5 N -0.60 -13.38 2.42 -819.72 -1.98 -15.37 16 6 C 0.50 12.10 7.76 87.66 0.68 12.78 16 7 O -0.58 -17.65 15.84 -3.04 -0.05 -17.70 16 8 C 0.09 1.63 4.14 85.64 0.35 1.98 16 9 N -0.59 -11.05 2.33 -828.03 -1.93 -12.98 16 10 C 0.08 0.82 6.65 86.39 0.57 1.39 16 11 C 0.04 0.38 6.88 71.99 0.50 0.88 16 12 O -0.38 -5.35 10.86 -148.98 -1.62 -6.97 16 13 C 0.06 0.94 6.98 71.13 0.50 1.44 16 14 C 0.48 11.32 7.58 87.69 0.66 11.99 16 15 O -0.59 -18.98 16.36 -3.02 -0.05 -19.03 16 16 C 0.11 2.22 6.35 86.36 0.55 2.77 16 17 C -0.12 -3.52 4.90 30.67 0.15 -3.37 16 18 C -0.08 -2.28 1.96 -10.76 -0.02 -2.31 16 19 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 20 C 0.16 6.27 5.18 86.38 0.45 6.71 16 21 N -0.74 -37.01 5.32 -343.45 -1.83 -38.83 16 22 C -0.24 -13.67 9.99 84.03 0.84 -12.83 16 23 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 24 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 25 N -0.97 -58.10 13.06 21.65 0.28 -57.82 16 26 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 29 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 30 H 0.04 1.32 5.98 -2.39 -0.01 1.30 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.56 6.58 -2.39 -0.02 1.54 16 33 H 0.08 2.02 7.01 -2.38 -0.02 2.01 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.15 1.49 7.84 -2.39 -0.02 1.47 16 36 H 0.11 2.31 6.79 -2.39 -0.02 2.30 16 37 H 0.10 0.88 8.13 -2.39 -0.02 0.86 16 38 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 40 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.10 1.61 5.93 -2.39 -0.01 1.60 16 45 H 0.07 2.23 7.15 -2.39 -0.02 2.21 16 46 H 0.05 1.72 6.34 -2.39 -0.02 1.70 16 47 H 0.01 0.59 6.74 -2.38 -0.02 0.57 16 48 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.38 19.54 6.85 -92.71 -0.63 18.90 16 50 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -78.24 388.81 1.94 -76.30 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.32 Total: 28.72 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.77 Total: 15.40 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -5.46 Total: -125.01 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.72 Total: -43.69 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -78.24 1.94 -76.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184586779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.556 kcal (2) G-P(sol) polarization free energy of solvation -78.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds