Wall clock time and date at job start Tue Mar 31 2020 23:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.32777 * 2 1 4 4 C 1.54472 * 110.36842 * 237.62911 * 2 1 3 5 5 C 1.54512 * 104.05988 * 217.18890 * 4 2 1 6 6 C 1.54472 * 104.06499 * 0.02562 * 5 4 2 7 7 H 1.09006 * 110.46542 * 265.10099 * 6 5 4 8 8 C 1.50700 * 110.37551 * 142.80806 * 6 5 4 9 9 O 1.21283 * 119.99803 * 248.16456 * 8 6 5 10 10 N 1.34777 * 119.99675 * 68.44331 * 8 6 5 11 11 C 1.47016 * 125.64953 * 359.74753 * 10 8 6 12 12 C 1.54324 * 107.26889 * 181.02636 * 11 10 8 13 13 C 1.55156 * 102.94413 * 22.19488 * 12 11 10 14 14 H 1.08998 * 111.00639 * 82.57314 * 13 12 11 15 15 N 1.46907 * 111.00105 * 206.38633 * 13 12 11 16 16 C 1.46897 * 110.99550 * 174.58894 * 15 13 12 17 17 C 1.46897 * 110.99820 * 298.54138 * 15 13 12 18 18 C 1.50706 * 109.46526 * 170.00400 * 17 15 13 19 19 O 1.21285 * 120.00226 * 359.97438 * 18 17 15 20 20 N 1.34781 * 119.99709 * 180.02562 * 18 17 15 21 21 C 1.37095 * 119.99927 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00065 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00113 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99836 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00066 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47092 * 120.00171 * 25 23 21 28 28 H 1.48497 * 109.46987 * 240.00103 * 25 23 21 29 29 C 1.47426 * 125.64311 * 179.44245 * 10 8 6 30 30 O 1.44424 * 110.37116 * 122.24685 * 2 1 3 31 31 H 1.09000 * 109.47154 * 299.20982 * 1 2 3 32 32 H 1.09000 * 109.46830 * 59.20313 * 1 2 3 33 33 H 1.08997 * 109.47478 * 179.20695 * 1 2 3 34 34 H 1.08997 * 110.51601 * 335.83681 * 4 2 1 35 35 H 1.09004 * 110.51344 * 98.41530 * 4 2 1 36 36 H 1.09004 * 110.51210 * 241.35306 * 5 4 2 37 37 H 1.09002 * 110.51212 * 118.64754 * 5 4 2 38 38 H 1.09004 * 109.88101 * 300.43815 * 11 10 8 39 39 H 1.08997 * 109.88649 * 61.45491 * 11 10 8 40 40 H 1.09003 * 110.72012 * 140.55453 * 12 11 10 41 41 H 1.09002 * 110.72222 * 263.64824 * 12 11 10 42 42 H 1.08999 * 109.47507 * 60.00220 * 16 15 13 43 43 H 1.08998 * 109.47075 * 179.97438 * 16 15 13 44 44 H 1.09004 * 109.47733 * 299.99925 * 16 15 13 45 45 H 1.09001 * 109.47032 * 290.00067 * 17 15 13 46 46 H 1.08996 * 109.46907 * 50.00475 * 17 15 13 47 47 H 0.97003 * 119.99562 * 359.97438 * 20 18 17 48 48 H 0.96996 * 119.99949 * 180.02562 * 24 23 21 49 49 H 1.08999 * 110.36638 * 274.74255 * 29 10 8 50 50 H 1.09000 * 110.36899 * 37.07072 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7753 -1.2231 5 6 3.3177 -1.5064 -0.6842 6 6 3.3870 -1.0868 0.8008 7 1 4.0524 -0.2323 0.9247 8 6 3.8526 -2.2407 1.6509 9 8 3.0889 -2.7633 2.4348 10 7 5.1195 -2.6882 1.5441 11 6 6.1453 -2.1488 0.6396 12 6 7.4243 -2.9875 0.8455 13 6 6.8793 -4.3115 1.4432 14 1 6.5207 -4.9765 0.6575 15 7 7.8980 -4.9759 2.2671 16 6 7.3436 -6.1606 2.9357 17 6 9.0768 -5.3278 1.4643 18 6 10.1891 -5.7784 2.3761 19 8 10.0168 -5.8033 3.5764 20 7 11.3755 -6.1525 1.8576 21 6 12.3875 -6.5619 2.6869 22 1 12.2339 -6.5849 3.7557 23 6 13.6106 -6.9482 2.1524 24 7 13.7974 -6.9206 0.8519 25 14 14.9892 -7.5066 3.2824 26 1 14.5279 -7.4474 4.6928 27 1 15.3712 -8.9014 2.9453 28 1 16.1641 -6.6155 3.1076 29 6 5.7077 -3.7956 2.3194 30 8 2.0328 -0.7224 1.1451 31 1 -0.3633 0.5015 0.8970 32 1 -0.3633 0.5262 -0.8828 33 1 -0.3634 -1.0275 -0.0142 34 1 1.3275 -1.4936 -1.5756 35 1 2.3407 -0.0862 -2.0223 36 1 4.2109 -1.1786 -1.2162 37 1 3.1955 -2.5861 -0.7704 38 1 5.8094 -2.2328 -0.3940 39 1 6.3412 -1.1044 0.8820 40 1 7.9228 -3.1706 -0.1064 41 1 8.1002 -2.4949 1.5446 42 1 6.9854 -6.8665 2.1864 43 1 8.1188 -6.6337 3.5386 44 1 6.5155 -5.8612 3.5781 45 1 8.8209 -6.1345 0.7773 46 1 9.4029 -4.4565 0.8965 47 1 11.5134 -6.1322 0.8976 48 1 14.6510 -7.1906 0.4787 49 1 6.0789 -3.4324 3.2778 50 1 4.9718 -4.5852 2.4713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192446362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:54 Heat of formation + Delta-G solvation = -99.977651 kcal Electronic energy + Delta-G solvation = -29817.423627 eV Core-core repulsion = 25652.011580 eV Total energy + Delta-G solvation = -4165.412047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.82409 -39.53115 -38.53591 -37.53255 -35.52345 -33.86080 -32.73864 -32.34834 -31.27269 -30.88093 -29.34701 -27.65952 -26.97161 -25.22788 -24.00008 -23.12679 -22.45608 -21.51095 -20.38367 -19.65431 -19.09989 -17.86859 -17.62876 -16.98056 -16.82836 -16.21085 -15.87941 -15.72041 -15.00433 -14.75250 -14.50947 -14.31110 -14.26754 -14.01438 -13.92521 -13.61803 -13.55905 -13.21260 -12.96244 -12.78604 -12.71405 -12.63354 -12.25411 -12.19818 -11.97640 -11.84311 -11.53557 -11.44946 -11.33552 -11.24043 -11.15853 -11.04455 -10.95751 -10.82261 -10.35544 -10.34969 -10.24239 -9.83215 -9.50663 -8.86922 -8.49924 -8.01495 -7.91819 -6.43940 -3.84563 2.33927 2.45227 3.14921 3.25883 3.33007 3.51049 3.87607 3.90085 3.95248 4.11642 4.21158 4.33953 4.37751 4.45704 4.53590 4.65020 4.77718 4.80881 4.92549 5.00663 5.03949 5.10225 5.14374 5.20696 5.25276 5.27384 5.33574 5.41759 5.48581 5.58109 5.60887 5.62880 5.68061 5.73607 5.75293 5.83902 5.86163 5.92092 6.00895 6.07075 6.25369 6.39657 6.53076 7.15327 7.26268 7.31651 7.53729 7.93745 8.04587 8.59587 9.16426 9.52198 10.03959 10.73845 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035162 B = 0.001838 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.131532 B =15227.256590 C =15685.956286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.064 3.936 7 H 0.094 0.906 8 C 0.534 3.466 9 O -0.519 6.519 10 N -0.616 5.616 11 C 0.098 3.902 12 C -0.128 4.128 13 C 0.069 3.931 14 H 0.056 0.944 15 N -0.507 5.507 16 C 0.019 3.981 17 C 0.045 3.955 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.119 3.881 30 O -0.342 6.342 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.016 0.984 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.084 0.916 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.391 13.542 -10.089 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.090 0.910 4 C -0.187 4.187 5 C -0.182 4.182 6 C 0.002 3.998 7 H 0.112 0.888 8 C 0.321 3.679 9 O -0.394 6.394 10 N -0.352 5.352 11 C -0.025 4.025 12 C -0.166 4.166 13 C -0.041 4.041 14 H 0.074 0.926 15 N -0.231 5.231 16 C -0.128 4.128 17 C -0.086 4.086 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.003 4.003 30 O -0.260 6.260 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.034 0.966 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.823 13.499 -8.376 26.191 hybrid contribution 0.849 -0.758 -1.074 1.565 sum -19.973 12.741 -9.450 25.506 Atomic orbital electron populations 1.21799 0.92790 1.03198 1.02581 1.23084 0.95811 0.95429 0.84847 0.90987 1.23018 0.97418 0.99874 0.98387 1.22916 0.99441 1.02252 0.93588 1.22746 0.87091 0.96055 0.93859 0.88832 1.19805 0.80359 0.84259 0.83456 1.90744 1.53136 1.58141 1.37380 1.48327 1.10122 1.35465 1.41318 1.22179 0.88076 0.98408 0.93822 1.22759 0.96310 0.95065 1.02422 1.22823 0.91958 0.95151 0.94130 0.92646 1.61609 1.04719 1.27620 1.29158 1.22584 1.01184 0.90684 0.98374 1.21879 0.91286 1.00444 0.94964 1.19703 0.83922 0.84385 0.89068 1.90494 1.81689 1.58531 1.15288 1.41868 1.10668 1.57825 1.09755 1.19751 0.90570 1.40074 0.92351 0.87833 1.25256 0.98770 0.97648 0.96275 1.69618 1.25760 1.48435 1.10538 0.85805 0.80303 0.78086 0.80190 1.19210 1.20802 1.20759 1.22255 0.94161 0.88772 0.95158 1.89289 1.24896 1.74278 1.37586 0.91631 0.90990 0.91608 0.90155 0.90017 0.89381 0.90114 0.91145 0.90965 0.89726 0.88769 0.96582 0.88276 0.91925 0.93412 0.89218 0.77531 0.91945 0.89768 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.52 37.16 0.35 -0.57 16 2 C 0.07 0.49 3.92 -25.96 -0.10 0.38 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 4 C -0.15 -0.86 6.63 -25.17 -0.17 -1.03 16 5 C -0.14 -0.97 5.61 -25.17 -0.14 -1.11 16 6 C 0.06 0.61 3.07 -27.11 -0.08 0.53 16 7 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 8 C 0.53 6.91 7.12 -10.98 -0.08 6.83 16 9 O -0.52 -9.09 16.81 -13.62 -0.23 -9.32 16 10 N -0.62 -6.87 3.32 -170.38 -0.57 -7.44 16 11 C 0.10 0.78 6.25 -3.07 -0.02 0.76 16 12 C -0.13 -1.22 5.31 -24.90 -0.13 -1.35 16 13 C 0.07 0.83 2.72 -65.44 -0.18 0.65 16 14 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 15 N -0.51 -7.92 4.40 -233.60 -1.03 -8.95 16 16 C 0.02 0.31 9.01 60.06 0.54 0.85 16 17 C 0.05 0.76 5.32 -4.97 -0.03 0.73 16 18 C 0.44 10.07 7.47 -10.98 -0.08 9.99 16 19 O -0.58 -15.06 13.91 5.55 0.08 -14.98 16 20 N -0.56 -13.86 5.29 -10.96 -0.06 -13.92 16 21 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 24 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 25 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 C 0.12 1.49 5.39 -2.41 -0.01 1.48 16 30 O -0.34 -3.99 10.61 -54.41 -0.58 -4.57 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.47 8.12 -51.93 -0.42 0.04 16 34 H 0.08 0.46 7.86 -51.93 -0.41 0.05 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.39 7.29 -51.93 -0.38 0.01 16 37 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 38 H 0.07 0.42 6.55 -51.93 -0.34 0.08 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.68 7.88 -51.93 -0.41 0.27 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.10 1.92 5.82 -51.93 -0.30 1.61 16 44 H 0.06 0.90 7.15 -51.93 -0.37 0.53 16 45 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 46 H 0.09 1.31 6.73 -51.93 -0.35 0.96 16 47 H 0.39 9.17 7.90 -40.82 -0.32 8.84 16 48 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 49 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 50 H 0.08 1.03 7.90 -51.93 -0.41 0.62 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -34.19 396.87 -9.35 -43.54 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.28 Total: 6.90 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -0.37 Total: 10.35 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.93 Total: -53.64 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.73 Total: -28.87 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.19 -9.35 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192446362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.436 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds