Wall clock time and date at job start Tue Mar 31 2020 23:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.32777 * 2 1 4 4 C 1.54472 * 110.36842 * 237.62911 * 2 1 3 5 5 C 1.54512 * 104.05988 * 217.18890 * 4 2 1 6 6 C 1.54472 * 104.06499 * 0.02562 * 5 4 2 7 7 H 1.09006 * 110.46542 * 265.10099 * 6 5 4 8 8 C 1.50700 * 110.37551 * 142.80806 * 6 5 4 9 9 O 1.21283 * 119.99803 * 248.16456 * 8 6 5 10 10 N 1.34777 * 119.99675 * 68.44331 * 8 6 5 11 11 C 1.47016 * 125.64953 * 359.74753 * 10 8 6 12 12 C 1.54324 * 107.26889 * 181.02636 * 11 10 8 13 13 C 1.55156 * 102.94413 * 22.19488 * 12 11 10 14 14 H 1.08998 * 111.00639 * 82.57314 * 13 12 11 15 15 N 1.46907 * 111.00105 * 206.38633 * 13 12 11 16 16 C 1.46897 * 110.99550 * 174.58894 * 15 13 12 17 17 C 1.46897 * 110.99820 * 298.54138 * 15 13 12 18 18 C 1.50706 * 109.46526 * 170.00400 * 17 15 13 19 19 O 1.21285 * 120.00226 * 359.97438 * 18 17 15 20 20 N 1.34781 * 119.99709 * 180.02562 * 18 17 15 21 21 C 1.37095 * 119.99927 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00065 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00113 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99836 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00066 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47092 * 120.00171 * 25 23 21 28 28 H 1.48497 * 109.46987 * 240.00103 * 25 23 21 29 29 C 1.47426 * 125.64311 * 179.44245 * 10 8 6 30 30 O 1.44424 * 110.37116 * 122.24685 * 2 1 3 31 31 H 1.09000 * 109.47154 * 299.20982 * 1 2 3 32 32 H 1.09000 * 109.46830 * 59.20313 * 1 2 3 33 33 H 1.08997 * 109.47478 * 179.20695 * 1 2 3 34 34 H 1.08997 * 110.51601 * 335.83681 * 4 2 1 35 35 H 1.09004 * 110.51344 * 98.41530 * 4 2 1 36 36 H 1.09004 * 110.51210 * 241.35306 * 5 4 2 37 37 H 1.09002 * 110.51212 * 118.64754 * 5 4 2 38 38 H 1.09004 * 109.88101 * 300.43815 * 11 10 8 39 39 H 1.08997 * 109.88649 * 61.45491 * 11 10 8 40 40 H 1.09003 * 110.72012 * 140.55453 * 12 11 10 41 41 H 1.09002 * 110.72222 * 263.64824 * 12 11 10 42 42 H 1.08999 * 109.47507 * 60.00220 * 16 15 13 43 43 H 1.08998 * 109.47075 * 179.97438 * 16 15 13 44 44 H 1.09004 * 109.47733 * 299.99925 * 16 15 13 45 45 H 1.09001 * 109.47032 * 290.00067 * 17 15 13 46 46 H 1.08996 * 109.46907 * 50.00475 * 17 15 13 47 47 H 0.97003 * 119.99562 * 359.97438 * 20 18 17 48 48 H 0.96996 * 119.99949 * 180.02562 * 24 23 21 49 49 H 1.08999 * 110.36638 * 274.74255 * 29 10 8 50 50 H 1.09000 * 110.36899 * 37.07072 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7753 -1.2231 5 6 3.3177 -1.5064 -0.6842 6 6 3.3870 -1.0868 0.8008 7 1 4.0524 -0.2323 0.9247 8 6 3.8526 -2.2407 1.6509 9 8 3.0889 -2.7633 2.4348 10 7 5.1195 -2.6882 1.5441 11 6 6.1453 -2.1488 0.6396 12 6 7.4243 -2.9875 0.8455 13 6 6.8793 -4.3115 1.4432 14 1 6.5207 -4.9765 0.6575 15 7 7.8980 -4.9759 2.2671 16 6 7.3436 -6.1606 2.9357 17 6 9.0768 -5.3278 1.4643 18 6 10.1891 -5.7784 2.3761 19 8 10.0168 -5.8033 3.5764 20 7 11.3755 -6.1525 1.8576 21 6 12.3875 -6.5619 2.6869 22 1 12.2339 -6.5849 3.7557 23 6 13.6106 -6.9482 2.1524 24 7 13.7974 -6.9206 0.8519 25 14 14.9892 -7.5066 3.2824 26 1 14.5279 -7.4474 4.6928 27 1 15.3712 -8.9014 2.9453 28 1 16.1641 -6.6155 3.1076 29 6 5.7077 -3.7956 2.3194 30 8 2.0328 -0.7224 1.1451 31 1 -0.3633 0.5015 0.8970 32 1 -0.3633 0.5262 -0.8828 33 1 -0.3634 -1.0275 -0.0142 34 1 1.3275 -1.4936 -1.5756 35 1 2.3407 -0.0862 -2.0223 36 1 4.2109 -1.1786 -1.2162 37 1 3.1955 -2.5861 -0.7704 38 1 5.8094 -2.2328 -0.3940 39 1 6.3412 -1.1044 0.8820 40 1 7.9228 -3.1706 -0.1064 41 1 8.1002 -2.4949 1.5446 42 1 6.9854 -6.8665 2.1864 43 1 8.1188 -6.6337 3.5386 44 1 6.5155 -5.8612 3.5781 45 1 8.8209 -6.1345 0.7773 46 1 9.4029 -4.4565 0.8965 47 1 11.5134 -6.1322 0.8976 48 1 14.6510 -7.1906 0.4787 49 1 6.0789 -3.4324 3.2778 50 1 4.9718 -4.5852 2.4713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192446362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:53 Heat of formation + Delta-G solvation = -125.054116 kcal Electronic energy + Delta-G solvation = -29818.511024 eV Core-core repulsion = 25652.011580 eV Total energy + Delta-G solvation = -4166.499444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.65723 -40.57117 -39.87911 -38.74743 -36.77921 -35.77273 -33.32614 -33.25574 -33.03631 -31.71432 -30.41023 -28.90539 -27.74788 -26.84045 -25.26150 -24.05145 -23.12488 -22.03070 -21.52327 -20.87298 -20.41689 -19.80656 -18.46733 -17.86975 -17.72094 -17.45669 -16.84506 -16.64884 -16.58301 -16.10067 -15.90414 -15.51995 -15.24054 -15.07785 -14.85096 -14.75870 -14.73546 -14.19561 -14.00621 -13.79856 -13.62587 -13.45019 -13.41323 -13.22774 -13.05943 -12.95342 -12.75043 -12.62245 -12.48610 -12.38591 -12.22915 -12.11674 -11.90107 -11.84932 -11.81512 -11.63753 -11.44082 -11.07358 -10.69506 -10.26725 -9.96806 -9.77177 -9.26119 -8.44521 -5.92235 1.37589 1.41906 1.43257 1.56231 1.59677 2.09064 2.30135 2.73359 2.92315 3.21486 3.23316 3.42695 3.53607 3.61358 3.64504 3.88477 3.95343 4.04506 4.13843 4.17128 4.24344 4.30331 4.33727 4.38787 4.44395 4.54189 4.55078 4.57546 4.58525 4.69226 4.74342 4.78305 4.86405 4.91406 4.94305 5.00927 5.02511 5.09839 5.17421 5.18365 5.25364 5.26464 5.44159 5.82438 5.85362 6.05177 6.18335 6.38362 6.64172 7.00123 7.16635 7.60402 8.16916 8.72976 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035162 B = 0.001838 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.131532 B =15227.256590 C =15685.956286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 H 0.090 0.910 4 C -0.144 4.144 5 C -0.139 4.139 6 C 0.064 3.936 7 H 0.120 0.880 8 C 0.526 3.474 9 O -0.581 6.581 10 N -0.611 5.611 11 C 0.097 3.903 12 C -0.124 4.124 13 C 0.074 3.926 14 H 0.071 0.929 15 N -0.525 5.525 16 C 0.025 3.975 17 C 0.060 3.940 18 C 0.441 3.559 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.330 4.330 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.989 3.011 26 H -0.276 1.276 27 H -0.272 1.272 28 H -0.271 1.271 29 C 0.120 3.880 30 O -0.385 6.385 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.119 0.881 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.064 0.936 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.065 15.239 -13.241 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.001 4.001 3 H 0.108 0.892 4 C -0.181 4.181 5 C -0.177 4.177 6 C 0.004 3.996 7 H 0.137 0.863 8 C 0.315 3.685 9 O -0.460 6.460 10 N -0.346 5.346 11 C -0.024 4.024 12 C -0.162 4.162 13 C -0.035 4.035 14 H 0.089 0.911 15 N -0.250 5.250 16 C -0.123 4.123 17 C -0.071 4.071 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.200 1.200 27 H -0.198 1.198 28 H -0.196 1.196 29 C -0.004 4.004 30 O -0.304 6.304 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.137 0.863 47 H 0.231 0.769 48 H 0.086 0.914 49 H 0.082 0.918 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.478 15.219 -11.586 28.022 hybrid contribution 0.677 -1.266 -0.044 1.436 sum -19.801 13.954 -11.631 26.871 Atomic orbital electron populations 1.21840 0.92670 1.02524 1.03368 1.23381 0.96122 0.96167 0.84399 0.89212 1.23030 0.96775 1.00053 0.98255 1.22965 1.01449 1.01575 0.91674 1.22917 0.86801 0.95218 0.94693 0.86279 1.20606 0.80182 0.84656 0.83036 1.90707 1.54892 1.60289 1.40114 1.48389 1.10324 1.34714 1.41175 1.22453 0.86208 0.99017 0.94754 1.22800 0.96963 0.93342 1.03078 1.22831 0.90750 0.96281 0.93639 0.91134 1.61512 1.05614 1.27496 1.30343 1.22419 0.99977 0.91259 0.98608 1.21739 0.89462 1.02159 0.93701 1.20802 0.84476 0.82444 0.89416 1.90479 1.82492 1.59592 1.17621 1.41913 1.10993 1.58574 1.09688 1.19662 0.92320 1.42282 0.91736 0.90509 1.25962 1.00269 0.97161 0.97728 1.69666 1.26546 1.48403 1.11414 0.84917 0.77646 0.78144 0.77918 1.20041 1.19761 1.19608 1.22084 0.94187 0.89085 0.95010 1.89263 1.26115 1.75094 1.39977 0.92597 0.88379 0.93059 0.90584 0.87052 0.85926 0.91551 0.87860 0.88771 0.87063 0.90148 0.94986 0.92192 0.91189 0.91319 0.86271 0.76931 0.91372 0.91798 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.52 71.98 0.69 -1.03 16 2 C 0.06 0.72 3.92 31.10 0.12 0.84 16 3 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 4 C -0.14 -1.19 6.63 31.61 0.21 -0.98 16 5 C -0.14 -1.40 5.61 31.61 0.18 -1.22 16 6 C 0.06 1.11 3.07 30.35 0.09 1.20 16 7 H 0.12 1.39 8.14 -2.38 -0.02 1.38 16 8 C 0.53 13.41 7.12 87.66 0.62 14.03 16 9 O -0.58 -21.31 16.81 15.30 0.26 -21.05 16 10 N -0.61 -12.76 3.32 -811.35 -2.70 -15.46 16 11 C 0.10 1.16 6.25 86.73 0.54 1.70 16 12 C -0.12 -1.92 5.31 31.78 0.17 -1.76 16 13 C 0.07 1.62 2.72 46.38 0.13 1.75 16 14 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 15 N -0.52 -15.97 4.40 -892.97 -3.93 -19.89 16 16 C 0.03 0.82 9.01 127.69 1.15 1.97 16 17 C 0.06 1.91 5.32 85.56 0.46 2.36 16 18 C 0.44 20.21 7.47 87.66 0.66 20.86 16 19 O -0.62 -33.35 13.91 -3.04 -0.04 -33.39 16 20 N -0.57 -28.48 5.29 -306.98 -1.62 -30.10 16 21 C -0.33 -18.44 9.68 84.04 0.81 -17.62 16 22 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.92 -48.43 13.05 21.66 0.28 -48.15 16 25 Si 0.99 42.50 29.55 68.60 2.03 44.53 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 29 C 0.12 2.99 5.39 86.93 0.47 3.46 16 30 O -0.38 -8.79 10.61 -130.64 -1.39 -10.18 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 34 H 0.08 0.70 7.86 -2.39 -0.02 0.68 16 35 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.12 0.38 7.29 -2.38 -0.02 0.36 16 37 H 0.07 0.88 7.86 -2.39 -0.02 0.86 16 38 H 0.10 0.63 6.55 -2.39 -0.02 0.62 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 1.20 7.88 -2.39 -0.02 1.18 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 2.42 5.82 -2.39 -0.01 2.41 16 44 H 0.07 2.09 7.15 -2.38 -0.02 2.07 16 45 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 46 H 0.12 3.10 6.73 -2.39 -0.02 3.09 16 47 H 0.40 18.49 7.90 -92.71 -0.73 17.75 16 48 H 0.28 13.65 8.31 -92.71 -0.77 12.87 16 49 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.06 1.72 7.90 -2.39 -0.02 1.70 16 Total: -1.00 -79.52 396.87 -0.14 -79.66 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.21 Total: 28.60 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: 6.76 Total: 25.43 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -7.96 Total: -113.61 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: -1.17 Total: -64.62 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -79.52 -0.14 -79.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192446362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.393 kcal (2) G-P(sol) polarization free energy of solvation -79.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds