Wall clock time and date at job start Tue Mar 31 2020 23:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.55668 * 2 1 4 4 C 1.55001 * 110.75059 * 122.97359 * 2 1 3 5 5 C 1.54815 * 102.09258 * 155.58842 * 4 2 1 6 6 H 1.09002 * 110.48709 * 97.79310 * 5 4 2 7 7 C 1.50698 * 110.48450 * 220.44032 * 5 4 2 8 8 O 1.21273 * 120.00321 * 11.59004 * 7 5 4 9 9 N 1.34779 * 119.99677 * 191.58439 * 7 5 4 10 10 C 1.44678 * 118.54901 * 184.99851 * 9 7 5 11 11 C 1.54947 * 109.51568 * 269.08137 * 10 9 7 12 12 C 1.47545 * 109.73895 * 290.51779 * 11 10 9 13 13 N 1.46264 * 114.37233 * 62.21788 * 12 11 10 14 14 C 1.46900 * 110.99987 * 148.55841 * 13 12 11 15 15 C 1.50700 * 109.46852 * 64.51657 * 14 13 12 16 16 O 1.21296 * 120.00472 * 354.32544 * 15 14 13 17 17 N 1.34778 * 119.99769 * 174.31902 * 15 14 13 18 18 C 1.37099 * 120.00048 * 180.02562 * 17 15 14 19 19 H 1.08008 * 119.99918 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00194 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00005 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00214 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47048 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47365 * 119.99605 * 22 20 18 25 25 H 1.48495 * 109.47067 * 240.00037 * 22 20 18 26 26 C 1.44760 * 110.64217 * 272.25644 * 13 12 11 27 27 C 1.47783 * 118.54920 * 4.73148 * 9 7 5 28 28 C 1.54101 * 104.18668 * 339.11662 * 5 4 2 29 29 O 1.43742 * 107.29700 * 357.97120 * 28 5 4 30 30 H 1.09004 * 109.47493 * 181.42094 * 1 2 3 31 31 H 1.08997 * 109.47274 * 301.42865 * 1 2 3 32 32 H 1.09002 * 109.46711 * 61.43079 * 1 2 3 33 33 H 1.08995 * 110.90714 * 37.39210 * 4 2 1 34 34 H 1.08996 * 110.90527 * 273.78348 * 4 2 1 35 35 H 1.08995 * 109.46183 * 29.09333 * 10 9 7 36 36 H 1.08991 * 109.46419 * 149.07825 * 10 9 7 37 37 H 1.09003 * 109.43113 * 50.60243 * 11 10 9 38 38 H 1.09006 * 109.42465 * 170.48860 * 11 10 9 39 39 H 1.09003 * 108.50065 * 183.48382 * 12 11 10 40 40 H 1.08995 * 108.50029 * 301.10898 * 12 11 10 41 41 H 1.08997 * 109.47451 * 184.52149 * 14 13 12 42 42 H 1.09004 * 109.47323 * 304.52497 * 14 13 12 43 43 H 0.97002 * 120.00367 * 0.02562 * 17 15 14 44 44 H 0.96996 * 120.00071 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.43373 * 214.22610 * 26 13 12 46 46 H 1.08997 * 109.43968 * 334.13976 * 26 13 12 47 47 H 1.08998 * 109.06184 * 258.64408 * 27 9 7 48 48 H 1.09004 * 109.06344 * 17.57486 * 27 9 7 49 49 H 1.09002 * 109.87756 * 117.39566 * 28 5 4 50 50 H 1.09000 * 109.87805 * 238.39523 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0792 -0.7889 1.2160 5 6 3.4831 -1.2130 0.7202 6 1 4.2433 -0.5280 1.0957 7 6 3.7880 -2.6261 1.1457 8 8 2.9075 -3.3266 1.5981 9 7 5.0394 -3.1115 1.0233 10 6 5.2747 -4.5040 1.3377 11 6 5.6569 -4.6397 2.8331 12 6 6.9940 -4.0587 3.0604 13 7 7.0873 -2.6279 2.7719 14 6 8.0718 -1.9775 3.6471 15 6 9.4445 -2.5257 3.3533 16 8 9.5762 -3.4457 2.5739 17 7 10.5259 -1.9936 3.9566 18 6 11.7748 -2.4919 3.6890 19 1 11.8921 -3.3107 2.9944 20 6 12.8896 -1.9437 4.3113 21 7 12.7469 -0.9472 5.1560 22 14 14.5913 -2.6222 3.9462 23 1 14.4814 -3.7340 2.9677 24 1 15.4423 -1.5455 3.3792 25 1 15.2027 -3.1271 5.2017 26 6 7.4077 -2.4083 1.3774 27 6 6.1094 -2.1994 0.5683 28 6 3.3852 -1.1211 -0.8150 29 8 2.0385 -0.7337 -1.1349 30 1 -0.3634 -1.0274 0.0255 31 1 -0.3634 0.5358 0.8769 32 1 -0.3633 0.4915 -0.9026 33 1 1.4605 -1.6615 1.4250 34 1 2.1541 -0.1474 2.0940 35 1 4.3698 -5.0787 1.1405 36 1 6.0880 -4.8835 0.7193 37 1 4.9240 -4.1126 3.4440 38 1 5.6686 -5.6939 3.1101 39 1 7.2686 -4.2201 4.1029 40 1 7.7111 -4.5840 2.4297 41 1 8.0637 -0.9025 3.4673 42 1 7.8176 -2.1737 4.6887 43 1 10.4206 -1.2580 4.5801 44 1 13.5251 -0.5648 5.5908 45 1 8.0389 -1.5243 1.2852 46 1 7.9392 -3.2758 0.9864 47 1 6.3097 -2.3842 -0.4871 48 1 5.7751 -1.1692 0.6909 49 1 4.0845 -0.3722 -1.1868 50 1 3.6098 -2.0907 -1.2593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196340507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:03 Heat of formation + Delta-G solvation = -102.336506 kcal Electronic energy + Delta-G solvation = -30969.318835 eV Core-core repulsion = 26803.804500 eV Total energy + Delta-G solvation = -4165.514335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86229 -39.54213 -38.62975 -37.07677 -34.89154 -33.86282 -33.27384 -32.43145 -31.68260 -31.39130 -29.21143 -26.91146 -26.24844 -25.66806 -24.12996 -23.51280 -21.67739 -21.34200 -20.63698 -19.28512 -18.70160 -17.93758 -17.51122 -16.83416 -16.64081 -15.97736 -15.80833 -15.52223 -15.25307 -14.98418 -14.62702 -14.49815 -14.08739 -13.95860 -13.79126 -13.59684 -13.24515 -13.14932 -12.82176 -12.66471 -12.51592 -12.34649 -12.03121 -12.00835 -11.74511 -11.64696 -11.45452 -11.29182 -11.24949 -11.19940 -10.95163 -10.90438 -10.66029 -10.44262 -10.38644 -10.33004 -10.05590 -9.63881 -9.58504 -9.19682 -8.56061 -8.08770 -7.67022 -6.52745 -3.94313 2.57734 2.99481 3.07377 3.19434 3.25767 3.56124 3.75369 4.06649 4.11677 4.19362 4.35228 4.59117 4.73325 4.80177 4.88699 4.93697 5.05105 5.06674 5.09926 5.14062 5.21279 5.24585 5.32206 5.35572 5.40317 5.47128 5.58280 5.61331 5.68037 5.71692 5.78588 5.82589 5.86044 5.93001 5.99764 6.00345 6.05324 6.12925 6.27839 6.35370 6.56533 6.62214 6.70480 7.24270 7.38600 7.42303 7.44226 7.93288 8.19055 8.47413 9.05532 9.41395 9.91079 10.63898 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022504 B = 0.002337 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.904554 B =11977.302106 C =12457.737466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 H 0.071 0.929 4 C -0.137 4.137 5 C -0.149 4.149 6 H 0.110 0.890 7 C 0.523 3.477 8 O -0.542 6.542 9 N -0.588 5.588 10 C 0.119 3.881 11 C -0.127 4.127 12 C 0.054 3.946 13 N -0.508 5.508 14 C 0.044 3.956 15 C 0.405 3.595 16 O -0.597 6.597 17 N -0.556 5.556 18 C -0.302 4.302 19 H 0.103 0.897 20 C 0.024 3.976 21 N -0.897 5.897 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.046 3.954 27 C 0.110 3.890 28 C 0.065 3.935 29 O -0.372 6.372 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.393 0.607 44 H 0.272 0.728 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.298 2.929 -7.732 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.089 0.911 4 C -0.175 4.175 5 C -0.170 4.170 6 H 0.128 0.872 7 C 0.311 3.689 8 O -0.420 6.420 9 N -0.319 5.319 10 C -0.004 4.004 11 C -0.166 4.166 12 C -0.073 4.073 13 N -0.230 5.230 14 C -0.087 4.087 15 C 0.190 3.810 16 O -0.484 6.484 17 N -0.192 5.192 18 C -0.432 4.432 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.538 5.538 22 Si 0.756 3.244 23 H -0.193 1.193 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.084 4.084 27 C -0.013 4.013 28 C -0.013 4.013 29 O -0.291 6.291 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.057 2.191 -8.006 20.787 hybrid contribution 2.177 0.002 0.493 2.232 sum -16.880 2.193 -7.513 18.606 Atomic orbital electron populations 1.21763 0.92987 1.03161 1.02396 1.23173 0.95458 0.95147 0.84830 0.91137 1.23200 0.94384 1.01716 0.98206 1.22765 1.00472 0.96083 0.97702 0.87175 1.20184 0.82307 0.88610 0.77833 1.90651 1.46123 1.59895 1.45312 1.47553 1.07679 1.10730 1.65944 1.21444 1.01465 0.81422 0.96044 1.21346 0.98126 1.00522 0.96629 1.20982 0.96513 0.88110 1.01738 1.61265 1.45065 1.12963 1.03690 1.22225 0.89077 0.99287 0.98133 1.21038 0.86794 0.87160 0.86032 1.90485 1.86273 1.32011 1.39598 1.42030 1.05854 1.32057 1.39232 1.19747 0.82167 1.16590 1.24674 0.87939 1.25296 1.00279 0.96181 0.96097 1.69612 1.31666 1.24236 1.28310 0.85807 0.81393 0.78836 0.78355 1.19254 1.20652 1.20670 1.22351 0.94028 1.03110 0.88865 1.22390 0.88193 0.93430 0.97271 1.22999 0.85111 1.01008 0.92163 1.88893 1.27367 1.73789 1.39095 0.91608 0.91007 0.91862 0.88274 0.89871 0.90265 0.90896 0.91359 0.90810 0.92399 0.91925 0.89401 0.89361 0.77386 0.91767 0.90521 0.91435 0.91609 0.90180 0.91316 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C 0.07 0.63 3.97 -25.67 -0.10 0.53 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.14 -1.34 6.04 -24.72 -0.15 -1.49 16 5 C -0.15 -1.49 2.47 -90.24 -0.22 -1.71 16 6 H 0.11 0.94 6.43 -51.93 -0.33 0.61 16 7 C 0.52 6.79 6.66 -10.99 -0.07 6.72 16 8 O -0.54 -8.78 14.90 5.56 0.08 -8.70 16 9 N -0.59 -7.17 2.53 -171.99 -0.43 -7.61 16 10 C 0.12 1.50 5.40 -3.99 -0.02 1.48 16 11 C -0.13 -1.70 6.02 -28.34 -0.17 -1.87 16 12 C 0.05 0.84 4.01 -6.80 -0.03 0.82 16 13 N -0.51 -7.67 4.38 -240.79 -1.05 -8.72 16 14 C 0.04 0.73 5.49 -4.98 -0.03 0.70 16 15 C 0.40 8.71 7.07 -10.98 -0.08 8.63 16 16 O -0.60 -14.41 12.14 5.54 0.07 -14.34 16 17 N -0.56 -13.31 5.29 -10.96 -0.06 -13.37 16 18 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 19 H 0.10 2.89 7.16 -52.48 -0.38 2.51 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -23.66 13.05 55.50 0.72 -22.94 16 22 Si 0.93 20.42 29.55 -169.99 -5.02 15.39 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 26 C 0.05 0.65 4.27 -4.24 -0.02 0.63 16 27 C 0.11 1.19 6.04 -2.60 -0.02 1.17 16 28 C 0.06 0.61 7.00 37.73 0.26 0.88 16 29 O -0.37 -4.18 11.22 -35.23 -0.40 -4.58 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 1.18 6.70 -51.93 -0.35 0.83 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.02 7.32 -51.93 -0.38 0.64 16 36 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.95 7.53 -51.93 -0.39 0.56 16 40 H 0.06 1.12 5.81 -51.93 -0.30 0.82 16 41 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 42 H 0.09 1.37 7.91 -51.93 -0.41 0.96 16 43 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 44 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 45 H 0.08 1.11 7.46 -51.93 -0.39 0.73 16 46 H 0.07 1.12 6.21 -51.93 -0.32 0.80 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.73 5.50 -51.93 -0.29 0.45 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.84 7.69 -51.93 -0.40 0.44 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -31.32 385.05 -8.85 -40.17 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.04 Total: 10.84 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -0.52 Total: 8.06 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.82 Total: -52.64 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.25 Total: -27.62 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.32 -8.85 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196340507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.164 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds