Wall clock time and date at job start Tue Mar 31 2020 23:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.55668 * 2 1 4 4 C 1.55001 * 110.75059 * 122.97359 * 2 1 3 5 5 C 1.54815 * 102.09258 * 155.58842 * 4 2 1 6 6 H 1.09002 * 110.48709 * 97.79310 * 5 4 2 7 7 C 1.50698 * 110.48450 * 220.44032 * 5 4 2 8 8 O 1.21273 * 120.00321 * 11.59004 * 7 5 4 9 9 N 1.34779 * 119.99677 * 191.58439 * 7 5 4 10 10 C 1.44678 * 118.54901 * 184.99851 * 9 7 5 11 11 C 1.54947 * 109.51568 * 269.08137 * 10 9 7 12 12 C 1.47545 * 109.73895 * 290.51779 * 11 10 9 13 13 N 1.46264 * 114.37233 * 62.21788 * 12 11 10 14 14 C 1.46900 * 110.99987 * 148.55841 * 13 12 11 15 15 C 1.50700 * 109.46852 * 64.51657 * 14 13 12 16 16 O 1.21296 * 120.00472 * 354.32544 * 15 14 13 17 17 N 1.34778 * 119.99769 * 174.31902 * 15 14 13 18 18 C 1.37099 * 120.00048 * 180.02562 * 17 15 14 19 19 H 1.08008 * 119.99918 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00194 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00005 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00214 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47048 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47365 * 119.99605 * 22 20 18 25 25 H 1.48495 * 109.47067 * 240.00037 * 22 20 18 26 26 C 1.44760 * 110.64217 * 272.25644 * 13 12 11 27 27 C 1.47783 * 118.54920 * 4.73148 * 9 7 5 28 28 C 1.54101 * 104.18668 * 339.11662 * 5 4 2 29 29 O 1.43742 * 107.29700 * 357.97120 * 28 5 4 30 30 H 1.09004 * 109.47493 * 181.42094 * 1 2 3 31 31 H 1.08997 * 109.47274 * 301.42865 * 1 2 3 32 32 H 1.09002 * 109.46711 * 61.43079 * 1 2 3 33 33 H 1.08995 * 110.90714 * 37.39210 * 4 2 1 34 34 H 1.08996 * 110.90527 * 273.78348 * 4 2 1 35 35 H 1.08995 * 109.46183 * 29.09333 * 10 9 7 36 36 H 1.08991 * 109.46419 * 149.07825 * 10 9 7 37 37 H 1.09003 * 109.43113 * 50.60243 * 11 10 9 38 38 H 1.09006 * 109.42465 * 170.48860 * 11 10 9 39 39 H 1.09003 * 108.50065 * 183.48382 * 12 11 10 40 40 H 1.08995 * 108.50029 * 301.10898 * 12 11 10 41 41 H 1.08997 * 109.47451 * 184.52149 * 14 13 12 42 42 H 1.09004 * 109.47323 * 304.52497 * 14 13 12 43 43 H 0.97002 * 120.00367 * 0.02562 * 17 15 14 44 44 H 0.96996 * 120.00071 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.43373 * 214.22610 * 26 13 12 46 46 H 1.08997 * 109.43968 * 334.13976 * 26 13 12 47 47 H 1.08998 * 109.06184 * 258.64408 * 27 9 7 48 48 H 1.09004 * 109.06344 * 17.57486 * 27 9 7 49 49 H 1.09002 * 109.87756 * 117.39566 * 28 5 4 50 50 H 1.09000 * 109.87805 * 238.39523 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0792 -0.7889 1.2160 5 6 3.4831 -1.2130 0.7202 6 1 4.2433 -0.5280 1.0957 7 6 3.7880 -2.6261 1.1457 8 8 2.9075 -3.3266 1.5981 9 7 5.0394 -3.1115 1.0233 10 6 5.2747 -4.5040 1.3377 11 6 5.6569 -4.6397 2.8331 12 6 6.9940 -4.0587 3.0604 13 7 7.0873 -2.6279 2.7719 14 6 8.0718 -1.9775 3.6471 15 6 9.4445 -2.5257 3.3533 16 8 9.5762 -3.4457 2.5739 17 7 10.5259 -1.9936 3.9566 18 6 11.7748 -2.4919 3.6890 19 1 11.8921 -3.3107 2.9944 20 6 12.8896 -1.9437 4.3113 21 7 12.7469 -0.9472 5.1560 22 14 14.5913 -2.6222 3.9462 23 1 14.4814 -3.7340 2.9677 24 1 15.4423 -1.5455 3.3792 25 1 15.2027 -3.1271 5.2017 26 6 7.4077 -2.4083 1.3774 27 6 6.1094 -2.1994 0.5683 28 6 3.3852 -1.1211 -0.8150 29 8 2.0385 -0.7337 -1.1349 30 1 -0.3634 -1.0274 0.0255 31 1 -0.3634 0.5358 0.8769 32 1 -0.3633 0.4915 -0.9026 33 1 1.4605 -1.6615 1.4250 34 1 2.1541 -0.1474 2.0940 35 1 4.3698 -5.0787 1.1405 36 1 6.0880 -4.8835 0.7193 37 1 4.9240 -4.1126 3.4440 38 1 5.6686 -5.6939 3.1101 39 1 7.2686 -4.2201 4.1029 40 1 7.7111 -4.5840 2.4297 41 1 8.0637 -0.9025 3.4673 42 1 7.8176 -2.1737 4.6887 43 1 10.4206 -1.2580 4.5801 44 1 13.5251 -0.5648 5.5908 45 1 8.0389 -1.5243 1.2852 46 1 7.9392 -3.2758 0.9864 47 1 6.3097 -2.3842 -0.4871 48 1 5.7751 -1.1692 0.6909 49 1 4.0845 -0.3722 -1.1868 50 1 3.6098 -2.0907 -1.2593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196340507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:02 Heat of formation + Delta-G solvation = -124.803408 kcal Electronic energy + Delta-G solvation = -30970.293073 eV Core-core repulsion = 26803.804500 eV Total energy + Delta-G solvation = -4166.488573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.83372 -40.84011 -39.73263 -38.44819 -36.26608 -35.54701 -34.34263 -33.31601 -33.18224 -32.47548 -30.47873 -28.06496 -27.36457 -26.74599 -25.70534 -24.46348 -22.58378 -22.19285 -21.88482 -20.92074 -19.91662 -19.59277 -18.38898 -17.92958 -17.67361 -17.45105 -16.79575 -16.60844 -16.43394 -16.28465 -15.89930 -15.81663 -15.51245 -15.32166 -15.06081 -14.60241 -14.40547 -14.30054 -13.87963 -13.76604 -13.51937 -13.30481 -13.25619 -13.15816 -12.97858 -12.86033 -12.72486 -12.43398 -12.30494 -12.21681 -12.18460 -12.13161 -12.03341 -11.86454 -11.71335 -11.62110 -11.43515 -10.93596 -10.83670 -10.47697 -10.01973 -9.58694 -9.15472 -8.47858 -5.97138 1.33527 1.40062 1.52902 1.59980 2.01259 2.04118 2.27234 2.86611 2.93242 3.18987 3.24137 3.36499 3.54433 3.85116 3.89660 3.95705 4.04687 4.08790 4.13268 4.21756 4.28317 4.33794 4.40967 4.48195 4.49960 4.61131 4.63653 4.66900 4.71477 4.72100 4.76015 4.81700 4.87549 4.91528 4.92991 5.02859 5.05931 5.12205 5.21334 5.31349 5.33979 5.39703 5.65911 5.90032 5.94765 6.03421 6.14672 6.40316 6.57263 7.10618 7.20083 7.54553 8.08365 8.67987 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022504 B = 0.002337 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.904554 B =11977.302106 C =12457.737466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.092 0.908 4 C -0.137 4.137 5 C -0.144 4.144 6 H 0.134 0.866 7 C 0.519 3.481 8 O -0.581 6.581 9 N -0.588 5.588 10 C 0.120 3.880 11 C -0.118 4.118 12 C 0.063 3.937 13 N -0.498 5.498 14 C 0.053 3.947 15 C 0.409 3.591 16 O -0.624 6.624 17 N -0.570 5.570 18 C -0.329 4.329 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.918 5.918 22 Si 0.989 3.011 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.273 1.273 26 C 0.047 3.953 27 C 0.116 3.884 28 C 0.064 3.936 29 O -0.397 6.397 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.036 0.964 41 H 0.116 0.884 42 H 0.102 0.898 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.076 0.924 46 H 0.039 0.961 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.097 0.903 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.672 4.679 -8.192 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.165 4.165 6 H 0.151 0.849 7 C 0.308 3.692 8 O -0.461 6.461 9 N -0.318 5.318 10 C -0.003 4.003 11 C -0.157 4.157 12 C -0.065 4.065 13 N -0.220 5.220 14 C -0.078 4.078 15 C 0.196 3.804 16 O -0.511 6.511 17 N -0.207 5.207 18 C -0.459 4.459 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.559 5.559 22 Si 0.814 3.186 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.083 4.083 27 C -0.006 4.006 28 C -0.013 4.013 29 O -0.317 6.317 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.134 0.866 42 H 0.120 0.880 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.057 0.943 47 H 0.106 0.894 48 H 0.125 0.875 49 H 0.114 0.886 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.438 3.956 -8.473 21.571 hybrid contribution 2.226 -0.601 0.612 2.386 sum -17.212 3.354 -7.862 19.218 Atomic orbital electron populations 1.21795 0.92468 1.02528 1.03524 1.23348 0.96030 0.95694 0.83605 0.88979 1.23181 0.93865 1.01098 0.99360 1.22815 1.01220 0.94214 0.98267 0.84866 1.20729 0.81842 0.89597 0.77005 1.90638 1.47209 1.61179 1.47069 1.47646 1.08024 1.10615 1.65546 1.21384 1.01390 0.82119 0.95427 1.21244 0.96280 1.00970 0.97163 1.20906 0.96977 0.88276 1.00308 1.61446 1.43791 1.12468 1.04253 1.22307 0.85665 1.00621 0.99239 1.22075 0.88160 0.85956 0.84237 1.90485 1.87128 1.33089 1.40430 1.42103 1.05727 1.32708 1.40182 1.19650 0.84013 1.16906 1.25362 0.90424 1.26003 1.03190 0.96339 0.95741 1.69667 1.32726 1.24810 1.28721 0.84920 0.77393 0.78167 0.78169 1.19902 1.19593 1.19890 1.22359 0.95780 1.01773 0.88341 1.22452 0.86046 0.94477 0.97614 1.23100 0.85096 1.01536 0.91538 1.88872 1.28311 1.74343 1.40164 0.93174 0.89174 0.91398 0.90995 0.88232 0.90629 0.90408 0.92425 0.89579 0.93611 0.94550 0.86638 0.87996 0.77033 0.91328 0.90582 0.94290 0.89383 0.87527 0.88551 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 71.98 0.70 -1.30 16 2 C 0.07 1.09 3.97 31.28 0.12 1.21 16 3 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.14 -2.42 6.04 31.90 0.19 -2.23 16 5 C -0.14 -2.51 2.47 -10.55 -0.03 -2.54 16 6 H 0.13 1.71 6.43 -2.39 -0.02 1.69 16 7 C 0.52 12.75 6.66 87.66 0.58 13.33 16 8 O -0.58 -18.73 14.90 -3.01 -0.04 -18.77 16 9 N -0.59 -13.42 2.53 -816.43 -2.06 -15.49 16 10 C 0.12 2.97 5.40 87.39 0.47 3.44 16 11 C -0.12 -3.11 6.02 29.55 0.18 -2.93 16 12 C 0.06 1.96 4.01 84.72 0.34 2.30 16 13 N -0.50 -14.39 4.38 -915.74 -4.01 -18.39 16 14 C 0.05 1.66 5.49 85.56 0.47 2.13 16 15 C 0.41 17.62 7.07 87.66 0.62 18.24 16 16 O -0.62 -30.69 12.14 -3.08 -0.04 -30.73 16 17 N -0.57 -27.52 5.29 -306.97 -1.62 -29.14 16 18 C -0.33 -17.89 9.68 84.04 0.81 -17.08 16 19 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 21 N -0.92 -48.13 13.05 21.66 0.28 -47.85 16 22 Si 0.99 41.80 29.55 68.60 2.03 43.83 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 C 0.05 1.26 4.27 87.18 0.37 1.63 16 27 C 0.12 2.20 6.04 86.61 0.52 2.72 16 28 C 0.06 1.06 7.00 72.35 0.51 1.56 16 29 O -0.40 -8.18 11.22 -148.98 -1.67 -9.86 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.70 6.70 -2.39 -0.02 1.68 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.94 7.32 -2.39 -0.02 1.92 16 36 H 0.08 1.83 8.09 -2.39 -0.02 1.82 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.05 1.51 7.53 -2.39 -0.02 1.49 16 40 H 0.04 1.33 5.81 -2.39 -0.01 1.32 16 41 H 0.12 3.04 8.08 -2.39 -0.02 3.03 16 42 H 0.10 2.97 7.91 -2.38 -0.02 2.95 16 43 H 0.40 18.29 7.90 -92.71 -0.73 17.56 16 44 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 45 H 0.08 2.07 7.46 -2.39 -0.02 2.05 16 46 H 0.04 1.29 6.21 -2.39 -0.01 1.27 16 47 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.11 1.49 5.50 -2.38 -0.01 1.48 16 49 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.08 1.36 7.69 -2.39 -0.02 1.34 16 Total: -1.00 -69.34 385.05 -0.59 -69.92 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: 0.22 Total: 36.18 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 6.33 Total: 20.31 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -7.41 Total: -110.87 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -1.75 Total: -59.36 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -69.34 -0.59 -69.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196340507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.881 kcal (2) G-P(sol) polarization free energy of solvation -69.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds