Wall clock time and date at job start Tue Mar 31 2020 23:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.86883 * 2 1 4 4 C 1.54102 * 109.87918 * 121.16297 * 2 1 3 5 5 C 1.54807 * 104.18625 * 121.45520 * 4 2 1 6 6 H 1.08992 * 110.93986 * 262.66785 * 5 4 2 7 7 C 1.50707 * 110.90368 * 139.07761 * 5 4 2 8 8 O 1.21270 * 120.00148 * 349.54372 * 7 5 4 9 9 N 1.34783 * 119.99535 * 169.53916 * 7 5 4 10 10 C 1.44676 * 118.54273 * 185.42648 * 9 7 5 11 11 C 1.54951 * 109.52336 * 269.05510 * 10 9 7 12 12 C 1.47542 * 109.73091 * 290.52583 * 11 10 9 13 13 N 1.46263 * 114.37929 * 62.21788 * 12 11 10 14 14 C 1.46895 * 111.00296 * 148.55139 * 13 12 11 15 15 C 1.50699 * 109.47049 * 64.87582 * 14 13 12 16 16 O 1.21288 * 120.00005 * 354.32062 * 15 14 13 17 17 N 1.34777 * 120.00062 * 174.32059 * 15 14 13 18 18 C 1.37098 * 120.00144 * 179.72666 * 17 15 14 19 19 H 1.08001 * 119.99839 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00037 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00012 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00024 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46889 * 90.00341 * 22 20 18 24 24 H 1.48501 * 109.47473 * 209.99951 * 22 20 18 25 25 H 1.48493 * 109.47177 * 330.00545 * 22 20 18 26 26 C 1.44763 * 110.64093 * 272.25117 * 13 12 11 27 27 C 1.47774 * 118.55011 * 5.40179 * 9 7 5 28 28 C 1.54995 * 102.09347 * 20.88404 * 5 4 2 29 29 O 1.43740 * 109.88035 * 238.99746 * 2 1 3 30 30 H 1.09001 * 109.46987 * 179.54432 * 1 2 3 31 31 H 1.08997 * 109.47503 * 299.55097 * 1 2 3 32 32 H 1.09005 * 109.47374 * 59.55257 * 1 2 3 33 33 H 1.08998 * 110.48744 * 2.77897 * 4 2 1 34 34 H 1.08997 * 110.48541 * 240.13313 * 4 2 1 35 35 H 1.08995 * 109.46343 * 149.03896 * 10 9 7 36 36 H 1.08999 * 109.46597 * 29.06996 * 10 9 7 37 37 H 1.08997 * 109.43181 * 170.44502 * 11 10 9 38 38 H 1.08998 * 109.43021 * 50.60147 * 11 10 9 39 39 H 1.09004 * 108.50403 * 300.94757 * 12 11 10 40 40 H 1.09003 * 108.37757 * 183.39407 * 12 11 10 41 41 H 1.09004 * 109.47174 * 304.87716 * 14 13 12 42 42 H 1.08996 * 109.47247 * 184.87874 * 14 13 12 43 43 H 0.97007 * 120.00202 * 359.97438 * 17 15 14 44 44 H 0.96998 * 119.99905 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.43702 * 214.22179 * 26 13 12 46 46 H 1.09002 * 109.43657 * 334.09465 * 26 13 12 47 47 H 1.09001 * 109.06477 * 258.66911 * 27 9 7 48 48 H 1.09006 * 109.06307 * 17.67156 * 27 9 7 49 49 H 1.08998 * 110.61903 * 81.47796 * 28 5 4 50 50 H 1.08996 * 110.61662 * 204.31376 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 6 2.0540 -0.7499 1.2401 5 6 2.9195 -1.8923 0.6550 6 1 2.3546 -2.8231 0.6059 7 6 4.1827 -2.0744 1.4565 8 8 4.4929 -1.2542 2.2942 9 7 4.9676 -3.1489 1.2422 10 6 6.1079 -3.3558 2.1083 11 6 7.3528 -2.6621 1.5001 12 6 7.7769 -3.3785 0.2820 13 7 6.7830 -3.3860 -0.7910 14 6 7.4312 -3.4033 -2.1090 15 6 8.1886 -4.6950 -2.2794 16 8 8.2745 -5.4742 -1.3539 17 7 8.7705 -4.9843 -3.4601 18 6 9.4642 -6.1569 -3.6134 19 1 9.5448 -6.8485 -2.7878 20 6 10.0637 -6.4554 -4.8308 21 7 9.9661 -5.6136 -5.8352 22 14 11.0095 -8.0526 -5.0394 23 1 10.0877 -9.1152 -5.5153 24 1 12.0960 -7.8585 -6.0330 25 1 11.5967 -8.4540 -3.7359 26 6 5.8798 -4.5075 -0.6422 27 6 4.6252 -4.0639 0.1335 28 6 3.2380 -1.3630 -0.7666 29 8 2.0188 -0.6962 -1.1586 30 1 -0.3633 -1.0276 -0.0082 31 1 -0.3634 0.5068 0.8939 32 1 -0.3634 0.5208 -0.8860 33 1 1.2246 -1.1574 1.8182 34 1 2.6618 -0.0884 1.8573 35 1 6.2996 -4.4242 2.2074 36 1 5.8996 -2.9318 3.0906 37 1 8.1646 -2.6713 2.2273 38 1 7.1058 -1.6311 1.2467 39 1 8.0051 -4.4103 0.5493 40 1 8.6870 -2.9102 -0.0928 41 1 8.1226 -2.5640 -2.1850 42 1 6.6732 -3.3211 -2.8879 43 1 8.7015 -4.3613 -4.2004 44 1 10.3849 -5.8218 -6.6850 45 1 5.5875 -4.8709 -1.6274 46 1 6.3807 -5.3064 -0.0954 47 1 4.1277 -4.9447 0.5394 48 1 3.9460 -3.5554 -0.5509 49 1 4.0685 -0.6578 -0.7364 50 1 3.4613 -2.1884 -1.4424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196340509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:07 Heat of formation + Delta-G solvation = -101.649156 kcal Electronic energy + Delta-G solvation = -31229.563169 eV Core-core repulsion = 27064.078640 eV Total energy + Delta-G solvation = -4165.484529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86556 -39.52203 -38.65991 -37.10255 -34.89791 -33.85173 -33.27532 -32.47354 -31.59631 -31.37893 -29.23363 -26.88478 -26.24463 -25.55113 -24.11309 -23.52751 -21.90050 -21.13111 -20.62974 -19.27033 -18.80409 -17.96782 -17.70424 -16.75919 -16.05741 -15.88719 -15.74904 -15.66516 -15.32114 -14.94783 -14.72879 -14.53297 -14.01627 -13.93560 -13.78599 -13.59141 -13.19606 -13.12444 -13.05291 -12.71102 -12.46391 -12.38155 -12.16389 -12.00422 -11.64096 -11.63552 -11.42490 -11.22780 -11.15299 -11.02061 -10.94969 -10.92411 -10.68160 -10.47576 -10.38697 -10.31520 -9.88785 -9.77333 -9.58430 -9.19079 -8.57206 -8.07505 -7.66735 -6.51397 -3.93020 2.53917 2.95786 3.09701 3.19908 3.24989 3.64223 3.76783 4.08096 4.14240 4.21221 4.48155 4.51297 4.75799 4.89305 4.91400 4.94368 4.97844 5.06107 5.10563 5.14784 5.18978 5.28486 5.38695 5.40249 5.45473 5.49256 5.61078 5.68157 5.74005 5.76867 5.78431 5.79672 5.85058 5.93032 5.94397 6.00753 6.05197 6.13951 6.28171 6.35749 6.56382 6.66275 6.70630 7.23870 7.37565 7.42196 7.45162 7.94286 8.15601 8.48733 9.06659 9.42728 9.92428 10.65199 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.002597 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.579790 B =10778.931582 C =11748.797099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 H 0.069 0.931 4 C -0.139 4.139 5 C -0.146 4.146 6 H 0.105 0.895 7 C 0.524 3.476 8 O -0.544 6.544 9 N -0.586 5.586 10 C 0.120 3.880 11 C -0.127 4.127 12 C 0.054 3.946 13 N -0.507 5.507 14 C 0.044 3.956 15 C 0.405 3.595 16 O -0.597 6.597 17 N -0.556 5.556 18 C -0.303 4.303 19 H 0.102 0.898 20 C 0.024 3.976 21 N -0.897 5.897 22 Si 0.930 3.070 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.270 1.270 26 C 0.046 3.954 27 C 0.107 3.893 28 C 0.065 3.935 29 O -0.371 6.371 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.393 0.607 44 H 0.273 0.727 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.069 0.931 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.058 8.425 10.872 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 H 0.087 0.913 4 C -0.177 4.177 5 C -0.167 4.167 6 H 0.123 0.877 7 C 0.311 3.689 8 O -0.422 6.422 9 N -0.318 5.318 10 C -0.004 4.004 11 C -0.166 4.166 12 C -0.074 4.074 13 N -0.229 5.229 14 C -0.088 4.088 15 C 0.190 3.810 16 O -0.484 6.484 17 N -0.191 5.191 18 C -0.433 4.433 19 H 0.120 0.880 20 C -0.178 4.178 21 N -0.538 5.538 22 Si 0.756 3.244 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.195 1.195 26 C -0.084 4.084 27 C -0.016 4.016 28 C -0.012 4.012 29 O -0.290 6.290 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.226 0.774 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.088 0.912 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.101 8.725 11.556 20.922 hybrid contribution 1.194 -1.297 -0.746 1.914 sum -13.908 7.427 10.810 19.117 Atomic orbital electron populations 1.21937 0.93724 1.02787 1.02335 1.22766 0.95089 0.96023 0.84762 0.91267 1.22985 0.99530 0.96936 0.98218 1.22875 0.95449 1.01371 0.97036 0.87656 1.20188 0.84535 0.80937 0.83243 1.90650 1.73822 1.42050 1.35689 1.47545 1.27183 1.25428 1.31618 1.21446 0.85255 1.00381 0.93289 1.21346 0.97397 1.00706 0.97181 1.20977 0.93669 1.01223 0.91492 1.61290 1.18156 1.41930 1.01540 1.22232 0.98256 0.96738 0.91560 1.21026 0.85738 0.89946 0.84301 1.90481 1.65663 1.51774 1.40506 1.42024 1.45749 1.19836 1.11522 1.19692 1.28055 0.97066 0.98437 0.88009 1.25291 0.98034 0.99333 0.95139 1.69606 1.44686 1.36326 1.03195 0.85867 0.79001 0.81190 0.78295 1.20330 1.20827 1.19454 1.22297 0.92723 0.92798 1.00554 1.22385 0.98115 0.93049 0.88065 1.23530 0.88014 0.96951 0.92663 1.88903 1.39527 1.67557 1.33055 0.91889 0.91305 0.91906 0.90179 0.88570 0.90883 0.90299 0.90816 0.91357 0.91943 0.92395 0.89341 0.89332 0.77367 0.91708 0.90448 0.91377 0.91664 0.89944 0.91235 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.36 37.16 0.35 -0.77 16 2 C 0.07 0.67 4.05 -26.16 -0.11 0.57 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.14 -1.32 6.13 -25.20 -0.15 -1.48 16 5 C -0.15 -1.48 2.46 -89.76 -0.22 -1.70 16 6 H 0.11 0.91 7.58 -51.93 -0.39 0.52 16 7 C 0.52 6.63 6.91 -10.98 -0.08 6.55 16 8 O -0.54 -8.50 14.91 5.57 0.08 -8.42 16 9 N -0.59 -7.06 2.53 -172.22 -0.44 -7.50 16 10 C 0.12 1.47 5.40 -3.99 -0.02 1.45 16 11 C -0.13 -1.67 6.02 -28.33 -0.17 -1.84 16 12 C 0.05 0.83 4.01 -6.80 -0.03 0.80 16 13 N -0.51 -7.54 4.37 -241.05 -1.05 -8.60 16 14 C 0.04 0.71 5.49 -4.98 -0.03 0.68 16 15 C 0.40 8.70 7.07 -10.99 -0.08 8.62 16 16 O -0.60 -14.38 12.14 5.55 0.07 -14.31 16 17 N -0.56 -13.33 5.29 -10.96 -0.06 -13.39 16 18 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 19 H 0.10 2.87 7.16 -52.49 -0.38 2.49 16 20 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -23.76 13.05 55.50 0.72 -23.03 16 22 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 26 C 0.05 0.65 4.25 -4.43 -0.02 0.63 16 27 C 0.11 1.16 6.07 -2.81 -0.02 1.14 16 28 C 0.07 0.69 6.64 38.21 0.25 0.95 16 29 O -0.37 -4.27 11.19 -35.23 -0.39 -4.66 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.65 7.70 -51.93 -0.40 0.25 16 34 H 0.10 1.06 6.78 -51.93 -0.35 0.71 16 35 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.08 0.99 7.33 -51.93 -0.38 0.61 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.11 5.84 -51.93 -0.30 0.80 16 40 H 0.06 0.94 7.53 -51.93 -0.39 0.55 16 41 H 0.09 1.37 7.90 -51.93 -0.41 0.96 16 42 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 43 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 44 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.08 1.13 7.46 -51.93 -0.39 0.74 16 46 H 0.07 1.12 6.20 -51.93 -0.32 0.80 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.79 4.03 -51.93 -0.21 0.58 16 49 H 0.07 0.81 8.04 -51.93 -0.42 0.40 16 50 H 0.10 1.02 6.35 -51.93 -0.33 0.69 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -30.71 382.68 -8.81 -39.52 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -7.93 Total: 11.27 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.56 Total: 7.90 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.82 Total: -52.52 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.24 Total: -27.39 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.71 -8.81 -39.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196340509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.128 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds