Wall clock time and date at job start Tue Mar 31 2020 23:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.86883 * 2 1 4 4 C 1.54102 * 109.87918 * 121.16297 * 2 1 3 5 5 C 1.54807 * 104.18625 * 121.45520 * 4 2 1 6 6 H 1.08992 * 110.93986 * 262.66785 * 5 4 2 7 7 C 1.50707 * 110.90368 * 139.07761 * 5 4 2 8 8 O 1.21270 * 120.00148 * 349.54372 * 7 5 4 9 9 N 1.34783 * 119.99535 * 169.53916 * 7 5 4 10 10 C 1.44676 * 118.54273 * 185.42648 * 9 7 5 11 11 C 1.54951 * 109.52336 * 269.05510 * 10 9 7 12 12 C 1.47542 * 109.73091 * 290.52583 * 11 10 9 13 13 N 1.46263 * 114.37929 * 62.21788 * 12 11 10 14 14 C 1.46895 * 111.00296 * 148.55139 * 13 12 11 15 15 C 1.50699 * 109.47049 * 64.87582 * 14 13 12 16 16 O 1.21288 * 120.00005 * 354.32062 * 15 14 13 17 17 N 1.34777 * 120.00062 * 174.32059 * 15 14 13 18 18 C 1.37098 * 120.00144 * 179.72666 * 17 15 14 19 19 H 1.08001 * 119.99839 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00037 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00012 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00024 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46889 * 90.00341 * 22 20 18 24 24 H 1.48501 * 109.47473 * 209.99951 * 22 20 18 25 25 H 1.48493 * 109.47177 * 330.00545 * 22 20 18 26 26 C 1.44763 * 110.64093 * 272.25117 * 13 12 11 27 27 C 1.47774 * 118.55011 * 5.40179 * 9 7 5 28 28 C 1.54995 * 102.09347 * 20.88404 * 5 4 2 29 29 O 1.43740 * 109.88035 * 238.99746 * 2 1 3 30 30 H 1.09001 * 109.46987 * 179.54432 * 1 2 3 31 31 H 1.08997 * 109.47503 * 299.55097 * 1 2 3 32 32 H 1.09005 * 109.47374 * 59.55257 * 1 2 3 33 33 H 1.08998 * 110.48744 * 2.77897 * 4 2 1 34 34 H 1.08997 * 110.48541 * 240.13313 * 4 2 1 35 35 H 1.08995 * 109.46343 * 149.03896 * 10 9 7 36 36 H 1.08999 * 109.46597 * 29.06996 * 10 9 7 37 37 H 1.08997 * 109.43181 * 170.44502 * 11 10 9 38 38 H 1.08998 * 109.43021 * 50.60147 * 11 10 9 39 39 H 1.09004 * 108.50403 * 300.94757 * 12 11 10 40 40 H 1.09003 * 108.37757 * 183.39407 * 12 11 10 41 41 H 1.09004 * 109.47174 * 304.87716 * 14 13 12 42 42 H 1.08996 * 109.47247 * 184.87874 * 14 13 12 43 43 H 0.97007 * 120.00202 * 359.97438 * 17 15 14 44 44 H 0.96998 * 119.99905 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.43702 * 214.22179 * 26 13 12 46 46 H 1.09002 * 109.43657 * 334.09465 * 26 13 12 47 47 H 1.09001 * 109.06477 * 258.66911 * 27 9 7 48 48 H 1.09006 * 109.06307 * 17.67156 * 27 9 7 49 49 H 1.08998 * 110.61903 * 81.47796 * 28 5 4 50 50 H 1.08996 * 110.61662 * 204.31376 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 6 2.0540 -0.7499 1.2401 5 6 2.9195 -1.8923 0.6550 6 1 2.3546 -2.8231 0.6059 7 6 4.1827 -2.0744 1.4565 8 8 4.4929 -1.2542 2.2942 9 7 4.9676 -3.1489 1.2422 10 6 6.1079 -3.3558 2.1083 11 6 7.3528 -2.6621 1.5001 12 6 7.7769 -3.3785 0.2820 13 7 6.7830 -3.3860 -0.7910 14 6 7.4312 -3.4033 -2.1090 15 6 8.1886 -4.6950 -2.2794 16 8 8.2745 -5.4742 -1.3539 17 7 8.7705 -4.9843 -3.4601 18 6 9.4642 -6.1569 -3.6134 19 1 9.5448 -6.8485 -2.7878 20 6 10.0637 -6.4554 -4.8308 21 7 9.9661 -5.6136 -5.8352 22 14 11.0095 -8.0526 -5.0394 23 1 10.0877 -9.1152 -5.5153 24 1 12.0960 -7.8585 -6.0330 25 1 11.5967 -8.4540 -3.7359 26 6 5.8798 -4.5075 -0.6422 27 6 4.6252 -4.0639 0.1335 28 6 3.2380 -1.3630 -0.7666 29 8 2.0188 -0.6962 -1.1586 30 1 -0.3633 -1.0276 -0.0082 31 1 -0.3634 0.5068 0.8939 32 1 -0.3634 0.5208 -0.8860 33 1 1.2246 -1.1574 1.8182 34 1 2.6618 -0.0884 1.8573 35 1 6.2996 -4.4242 2.2074 36 1 5.8996 -2.9318 3.0906 37 1 8.1646 -2.6713 2.2273 38 1 7.1058 -1.6311 1.2467 39 1 8.0051 -4.4103 0.5493 40 1 8.6870 -2.9102 -0.0928 41 1 8.1226 -2.5640 -2.1850 42 1 6.6732 -3.3211 -2.8879 43 1 8.7015 -4.3613 -4.2004 44 1 10.3849 -5.8218 -6.6850 45 1 5.5875 -4.8709 -1.6274 46 1 6.3807 -5.3064 -0.0954 47 1 4.1277 -4.9447 0.5394 48 1 3.9460 -3.5554 -0.5509 49 1 4.0685 -0.6578 -0.7364 50 1 3.4613 -2.1884 -1.4424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196340509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:06 Heat of formation + Delta-G solvation = -123.406361 kcal Electronic energy + Delta-G solvation = -31230.506632 eV Core-core repulsion = 27064.078640 eV Total energy + Delta-G solvation = -4166.427992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.85242 -40.83157 -39.78089 -38.48044 -36.26795 -35.54191 -34.34895 -33.31440 -33.24596 -32.42088 -30.50511 -28.05689 -27.37683 -26.64647 -25.67691 -24.49321 -22.81230 -22.12916 -21.78163 -20.90879 -19.92664 -19.68687 -18.67396 -17.95710 -17.52342 -16.93872 -16.71947 -16.64260 -16.54387 -16.30628 -15.92738 -15.88294 -15.49966 -15.43465 -14.98723 -14.58251 -14.38474 -14.30544 -14.03607 -13.73090 -13.49950 -13.38332 -13.34136 -13.19015 -12.95661 -12.88637 -12.74013 -12.44211 -12.30321 -12.25616 -12.14920 -12.09400 -11.86211 -11.76987 -11.71505 -11.64486 -11.43053 -10.87761 -10.77113 -10.68389 -10.01650 -9.58779 -9.15233 -8.47289 -5.96682 1.35111 1.40042 1.51693 1.55812 2.00460 2.02714 2.27563 2.83528 2.96005 3.19630 3.24718 3.37918 3.63681 3.76108 3.88201 3.98250 4.03497 4.07073 4.12489 4.21582 4.23180 4.30172 4.40119 4.48488 4.49505 4.56952 4.64172 4.68501 4.71906 4.75721 4.78520 4.85042 4.85100 4.92500 4.98909 5.04157 5.06753 5.13015 5.14318 5.33506 5.35070 5.39856 5.65728 5.90189 5.91778 6.03589 6.15133 6.38543 6.57655 7.10882 7.17232 7.55088 8.08717 8.68437 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.002597 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.579790 B =10778.931582 C =11748.797099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 H 0.066 0.934 4 C -0.135 4.135 5 C -0.140 4.140 6 H 0.129 0.871 7 C 0.523 3.477 8 O -0.577 6.577 9 N -0.587 5.587 10 C 0.121 3.879 11 C -0.118 4.118 12 C 0.063 3.937 13 N -0.497 5.497 14 C 0.052 3.948 15 C 0.410 3.590 16 O -0.623 6.623 17 N -0.571 5.571 18 C -0.330 4.330 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.989 3.011 23 H -0.271 1.271 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.047 3.953 27 C 0.114 3.886 28 C 0.067 3.933 29 O -0.386 6.386 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.037 0.963 40 H 0.045 0.955 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.075 0.925 46 H 0.041 0.959 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.054 0.946 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.685 8.425 10.908 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 H 0.084 0.916 4 C -0.173 4.173 5 C -0.162 4.162 6 H 0.147 0.853 7 C 0.312 3.688 8 O -0.457 6.457 9 N -0.317 5.317 10 C -0.003 4.003 11 C -0.157 4.157 12 C -0.065 4.065 13 N -0.218 5.218 14 C -0.079 4.079 15 C 0.196 3.804 16 O -0.511 6.511 17 N -0.207 5.207 18 C -0.460 4.460 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.813 3.187 23 H -0.196 1.196 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.082 4.082 27 C -0.008 4.008 28 C -0.010 4.010 29 O -0.305 6.305 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.120 0.880 42 H 0.132 0.868 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.059 0.941 47 H 0.107 0.893 48 H 0.120 0.880 49 H 0.072 0.928 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.748 8.729 11.590 22.159 hybrid contribution 1.688 -1.257 -0.679 2.212 sum -15.060 7.472 10.911 20.042 Atomic orbital electron populations 1.21932 0.92040 1.03261 1.03147 1.22902 0.96425 0.95677 0.84092 0.91593 1.22955 0.99697 0.96460 0.98149 1.22903 0.94414 1.02649 0.96219 0.85334 1.20587 0.85071 0.80287 0.82897 1.90640 1.74699 1.43117 1.37249 1.47628 1.26963 1.25509 1.31631 1.21406 0.85001 1.00536 0.93341 1.21252 0.98407 0.99600 0.96467 1.20910 0.93529 0.99729 0.92353 1.61469 1.17600 1.42001 1.00773 1.22308 0.98632 0.93874 0.93113 1.22048 0.84310 0.91037 0.82956 1.90479 1.66146 1.53240 1.41196 1.42104 1.46666 1.19485 1.12491 1.19619 1.29874 0.98157 0.98349 0.90367 1.26006 0.98488 1.02186 0.94569 1.69667 1.45269 1.37562 1.03498 0.84980 0.77966 0.77717 0.78011 1.19597 1.19773 1.19918 1.22291 0.93512 0.91832 1.00568 1.22402 0.96569 0.93999 0.87862 1.23502 0.87460 0.96888 0.93120 1.88895 1.39663 1.67832 1.34125 0.91531 0.89640 0.92018 0.88387 0.90365 0.90343 0.90286 0.89484 0.92442 0.94503 0.93629 0.87992 0.86771 0.77066 0.91331 0.90698 0.94052 0.89329 0.87986 0.92799 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.36 71.98 0.67 -1.17 16 2 C 0.07 1.14 4.05 30.97 0.13 1.26 16 3 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 4 C -0.13 -2.32 6.13 31.58 0.19 -2.12 16 5 C -0.14 -2.52 2.46 -10.24 -0.03 -2.55 16 6 H 0.13 1.74 7.58 -2.39 -0.02 1.72 16 7 C 0.52 12.39 6.91 87.66 0.61 13.00 16 8 O -0.58 -17.57 14.91 -3.00 -0.04 -17.62 16 9 N -0.59 -13.12 2.53 -817.16 -2.07 -15.19 16 10 C 0.12 2.86 5.40 87.39 0.47 3.33 16 11 C -0.12 -3.05 6.02 29.56 0.18 -2.87 16 12 C 0.06 1.92 4.01 84.72 0.34 2.26 16 13 N -0.50 -14.31 4.37 -916.54 -4.01 -18.32 16 14 C 0.05 1.65 5.49 85.56 0.47 2.12 16 15 C 0.41 17.72 7.07 87.66 0.62 18.34 16 16 O -0.62 -30.60 12.14 -3.06 -0.04 -30.64 16 17 N -0.57 -27.72 5.29 -306.99 -1.62 -29.34 16 18 C -0.33 -18.00 9.68 84.04 0.81 -17.19 16 19 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 20 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 21 N -0.92 -48.57 13.05 21.66 0.28 -48.29 16 22 Si 0.99 41.98 29.55 68.60 2.03 44.00 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.05 1.28 4.25 87.05 0.37 1.65 16 27 C 0.11 2.20 6.07 86.48 0.52 2.73 16 28 C 0.07 1.29 6.64 72.66 0.48 1.78 16 29 O -0.39 -8.15 11.19 -148.98 -1.67 -9.82 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.10 1.32 7.70 -2.39 -0.02 1.30 16 34 H 0.08 1.66 6.78 -2.39 -0.02 1.65 16 35 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 36 H 0.08 1.90 7.33 -2.39 -0.02 1.88 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.33 5.84 -2.39 -0.01 1.32 16 40 H 0.05 1.49 7.53 -2.39 -0.02 1.47 16 41 H 0.10 3.01 7.90 -2.38 -0.02 2.99 16 42 H 0.11 3.09 8.09 -2.39 -0.02 3.07 16 43 H 0.40 18.48 7.90 -92.70 -0.73 17.75 16 44 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 45 H 0.07 2.07 7.46 -2.39 -0.02 2.06 16 46 H 0.04 1.36 6.20 -2.39 -0.01 1.35 16 47 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.10 1.61 4.03 -2.38 -0.01 1.60 16 49 H 0.05 1.20 8.04 -2.39 -0.02 1.19 16 50 H 0.12 1.92 6.35 -2.39 -0.02 1.91 16 Total: -1.00 -67.07 382.68 -0.60 -67.67 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: 0.23 Total: 37.16 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 6.31 Total: 20.38 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -7.42 Total: -111.14 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -1.75 Total: -58.07 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -67.07 -0.60 -67.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196340509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.734 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds