Wall clock time and date at job start Tue Mar 31 2020 23:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.43609 * 2 1 4 4 C 1.54098 * 110.48795 * 122.69139 * 2 1 3 5 5 O 1.43887 * 107.37577 * 116.78266 * 4 2 1 6 6 C 1.44380 * 106.89909 * 26.26739 * 5 4 2 7 7 H 1.09003 * 110.61668 * 78.74767 * 6 5 4 8 8 C 1.50708 * 110.61529 * 201.58239 * 6 5 4 9 9 O 1.21273 * 120.00237 * 1.42739 * 8 6 5 10 10 N 1.34777 * 119.99401 * 181.41881 * 8 6 5 11 11 C 1.47566 * 118.71937 * 359.90859 * 10 8 6 12 12 C 1.53799 * 111.26948 * 138.34252 * 11 10 8 13 13 C 1.51269 * 109.63127 * 319.97437 * 12 11 10 14 14 N 1.46199 * 109.09085 * 92.41760 * 13 12 11 15 15 C 1.46899 * 110.99933 * 144.76720 * 14 13 12 16 16 C 1.50698 * 109.47411 * 64.98682 * 15 14 13 17 17 O 1.21293 * 119.99825 * 0.02562 * 16 15 14 18 18 N 1.34781 * 120.00014 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99965 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99702 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00123 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99989 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99994 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46856 * 90.00235 * 23 21 19 25 25 H 1.48498 * 109.47275 * 210.00734 * 23 21 19 26 26 H 1.48500 * 109.46902 * 330.00597 * 23 21 19 27 27 C 1.41444 * 116.34502 * 272.96579 * 14 13 12 28 28 C 1.44888 * 118.74582 * 179.97438 * 10 8 6 29 29 C 1.54812 * 110.48671 * 237.45975 * 2 1 3 30 30 H 1.09001 * 109.47150 * 182.54034 * 1 2 3 31 31 H 1.08998 * 109.46920 * 302.54232 * 1 2 3 32 32 H 1.09002 * 109.47020 * 62.53985 * 1 2 3 33 33 H 1.09005 * 109.87819 * 236.06651 * 4 2 1 34 34 H 1.08990 * 109.87909 * 357.07126 * 4 2 1 35 35 H 1.09002 * 109.11428 * 17.89396 * 11 10 8 36 36 H 1.09001 * 109.09808 * 258.77935 * 11 10 8 37 37 H 1.09004 * 109.44577 * 199.92576 * 12 11 10 38 38 H 1.09000 * 109.41920 * 80.01283 * 12 11 10 39 39 H 1.09001 * 109.53655 * 332.53699 * 13 12 11 40 40 H 1.08998 * 109.59764 * 212.33784 * 13 12 11 41 41 H 1.09000 * 109.47437 * 184.99183 * 15 14 13 42 42 H 1.09003 * 109.47054 * 304.98778 * 15 14 13 43 43 H 0.97000 * 119.99918 * 0.02562 * 18 16 15 44 44 H 0.97003 * 119.99841 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.38943 * 303.32079 * 27 14 13 46 46 H 1.09003 * 109.38479 * 183.64052 * 27 14 13 47 47 H 1.09002 * 109.43530 * 149.63792 * 28 10 8 48 48 H 1.08996 * 109.43119 * 29.73138 * 28 10 8 49 49 H 1.09001 * 110.90639 * 102.24624 * 29 2 1 50 50 H 1.08993 * 110.91037 * 338.64007 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0694 -0.7797 1.2148 5 8 2.7994 -1.9118 0.7092 6 6 3.2660 -1.5552 -0.6098 7 1 4.1464 -0.9159 -0.5456 8 6 3.5673 -2.7910 -1.4181 9 8 3.3805 -3.8894 -0.9391 10 7 4.0444 -2.6754 -2.6733 11 6 4.2590 -1.3252 -3.2287 12 6 5.5776 -1.2492 -4.0167 13 6 6.6498 -2.0304 -3.2899 14 7 6.6741 -3.3995 -3.8019 15 6 8.0448 -3.9270 -3.8295 16 6 8.5689 -4.0379 -2.4209 17 8 7.8691 -3.7102 -1.4860 18 7 9.8148 -4.5022 -2.2000 19 6 10.2913 -4.6036 -0.9185 20 1 9.6686 -4.3110 -0.0861 21 6 11.5759 -5.0818 -0.6908 22 7 12.0325 -5.1794 0.5376 23 14 12.6534 -5.5871 -2.1307 24 1 13.4394 -4.4162 -2.5956 25 1 13.5791 -6.6660 -1.7015 26 1 11.7980 -6.0810 -3.2396 27 6 5.7906 -4.3160 -3.1853 28 6 4.3253 -3.8812 -3.4258 29 6 2.0718 -0.7801 -1.2225 30 1 -0.3633 -1.0267 0.0455 31 1 -0.3633 0.5528 0.8663 32 1 -0.3633 0.4739 -0.9119 33 1 2.7351 -0.1432 1.7979 34 1 1.2402 -1.1166 1.8368 35 1 4.2893 -0.6039 -2.4120 36 1 3.4313 -1.0772 -3.8931 37 1 5.8863 -0.2078 -4.1081 38 1 5.4308 -1.6725 -5.0104 39 1 6.4301 -2.0444 -2.2223 40 1 7.6198 -1.5618 -3.4563 41 1 8.0458 -4.9121 -4.2961 42 1 8.6820 -3.2531 -4.4022 43 1 10.3742 -4.7647 -2.9477 44 1 12.9292 -5.5135 0.6966 45 1 5.9884 -4.3443 -2.1138 46 1 5.9473 -5.3090 -3.6068 47 1 4.1737 -3.6895 -4.4880 48 1 3.6537 -4.6759 -3.1012 49 1 2.4103 -0.0965 -2.0012 50 1 1.3197 -1.4672 -1.6100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196574425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:38 Heat of formation + Delta-G solvation = -91.426197 kcal Electronic energy + Delta-G solvation = -31414.073928 eV Core-core repulsion = 27249.032700 eV Total energy + Delta-G solvation = -4165.041229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.82293 -39.56723 -38.56601 -37.10028 -35.12460 -33.85472 -33.72858 -32.57985 -31.72080 -30.97246 -28.90021 -26.84685 -26.51353 -25.74018 -24.33836 -23.54775 -21.77350 -20.87414 -20.58396 -19.39323 -18.96226 -18.29943 -17.65505 -16.78079 -16.42627 -15.91269 -15.62052 -15.37512 -15.29390 -15.04888 -14.77358 -14.60625 -14.16577 -13.91777 -13.89410 -13.33225 -13.29017 -13.14721 -13.03026 -12.92307 -12.71010 -12.31711 -12.14681 -11.88950 -11.74691 -11.56306 -11.51458 -11.36668 -11.25378 -11.18551 -11.09593 -11.01282 -10.80477 -10.60740 -10.56934 -10.00622 -9.93617 -9.57013 -9.44736 -9.15332 -8.58575 -8.19358 -7.52812 -6.32813 -3.84048 2.62425 2.86047 3.01444 3.05225 3.13889 3.69445 3.76902 4.05741 4.08478 4.19076 4.31817 4.46971 4.66214 4.71218 4.72847 4.83463 4.89248 4.96427 5.08620 5.14448 5.19310 5.27708 5.34045 5.34288 5.42679 5.45870 5.55996 5.58103 5.61342 5.64046 5.66637 5.71229 5.77935 5.86345 5.88883 5.89497 5.92709 6.04601 6.07593 6.45690 6.47421 6.64681 6.80942 7.28872 7.33962 7.55445 7.68429 8.13634 8.27418 8.56666 8.93356 9.40751 9.79765 10.80267 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002859 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.405458 B = 9790.364988 C =10685.171940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 H 0.087 0.913 4 C 0.046 3.954 5 O -0.345 6.345 6 C 0.060 3.940 7 H 0.095 0.905 8 C 0.518 3.482 9 O -0.515 6.515 10 N -0.601 5.601 11 C 0.106 3.894 12 C -0.132 4.132 13 C 0.070 3.930 14 N -0.534 5.534 15 C 0.046 3.954 16 C 0.413 3.587 17 O -0.573 6.573 18 N -0.586 5.586 19 C -0.306 4.306 20 H 0.118 0.882 21 C 0.041 3.959 22 N -0.880 5.880 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.042 3.958 28 C 0.124 3.876 29 C -0.140 4.140 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.370 0.630 44 H 0.274 0.726 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.089 0.911 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.960 12.519 -11.442 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.105 0.895 4 C -0.032 4.032 5 O -0.263 6.263 6 C -0.001 4.001 7 H 0.113 0.887 8 C 0.304 3.696 9 O -0.389 6.389 10 N -0.336 5.336 11 C -0.016 4.016 12 C -0.170 4.170 13 C -0.057 4.057 14 N -0.257 5.257 15 C -0.085 4.085 16 C 0.199 3.801 17 O -0.457 6.457 18 N -0.225 5.225 19 C -0.435 4.435 20 H 0.136 0.864 21 C -0.162 4.162 22 N -0.520 5.520 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.088 4.088 28 C 0.001 3.999 29 C -0.178 4.178 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.108 0.892 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.506 11.907 -10.716 25.240 hybrid contribution 1.516 -0.263 -0.263 1.561 sum -17.990 11.644 -10.978 24.078 Atomic orbital electron populations 1.21824 0.93709 1.02434 1.02064 1.22551 0.97290 1.00096 0.94599 0.89472 1.23372 0.95929 0.88020 0.95828 1.89091 1.71775 1.36706 1.28691 1.22985 0.98107 0.94324 0.84712 0.88722 1.20138 0.77426 0.90296 0.81742 1.90726 1.51262 1.27731 1.69142 1.47670 1.64722 1.07127 1.14110 1.22135 0.98158 0.82991 0.98344 1.21920 0.94186 1.00594 1.00325 1.21452 0.98002 0.87600 0.98666 1.58910 1.05597 1.02746 1.58444 1.22112 0.89917 1.01561 0.94934 1.21075 0.83073 0.84316 0.91649 1.90548 1.56947 1.53493 1.44711 1.42373 1.13624 1.58173 1.08332 1.19447 0.99116 1.41045 0.83873 0.86442 1.25074 0.96927 0.97516 0.96681 1.69630 1.18029 1.45330 1.18967 0.86657 0.81170 0.79329 0.82158 1.19617 1.20152 1.19423 1.21820 0.91304 0.94744 1.00934 1.21540 0.96251 0.86561 0.95573 1.23290 0.97231 0.99097 0.98196 0.92103 0.92202 0.92227 0.92006 0.89399 0.90459 0.91672 0.90489 0.90195 0.92166 0.91579 0.89379 0.89316 0.79677 0.91589 0.91331 0.90787 0.90243 0.89702 0.89229 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.92 37.16 0.33 -0.57 16 2 C -0.13 -0.96 3.64 -89.09 -0.32 -1.28 16 3 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.05 0.47 7.37 37.73 0.28 0.74 16 5 O -0.34 -5.32 10.81 -54.30 -0.59 -5.91 16 6 C 0.06 0.78 2.75 -26.83 -0.07 0.70 16 7 H 0.10 1.14 7.21 -51.93 -0.37 0.77 16 8 C 0.52 8.33 7.06 -10.98 -0.08 8.25 16 9 O -0.51 -10.73 16.00 -13.50 -0.22 -10.94 16 10 N -0.60 -7.94 2.18 -172.52 -0.38 -8.32 16 11 C 0.11 0.99 4.88 -3.04 -0.01 0.98 16 12 C -0.13 -1.30 5.78 -27.19 -0.16 -1.46 16 13 C 0.07 1.03 4.21 -5.08 -0.02 1.01 16 14 N -0.53 -8.11 3.99 -240.98 -0.96 -9.07 16 15 C 0.05 0.75 5.58 -4.98 -0.03 0.72 16 16 C 0.41 9.25 7.24 -10.98 -0.08 9.17 16 17 O -0.57 -15.12 12.15 5.55 0.07 -15.05 16 18 N -0.59 -14.00 5.09 -10.96 -0.06 -14.06 16 19 C -0.31 -8.76 10.16 -14.93 -0.15 -8.91 16 20 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -26.08 13.96 55.50 0.77 -25.30 16 23 Si 0.88 19.51 27.74 -169.99 -4.71 14.80 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 27 C 0.04 0.69 4.92 -5.77 -0.03 0.66 16 28 C 0.12 1.68 5.51 -4.00 -0.02 1.66 16 29 C -0.14 -1.21 5.38 -24.72 -0.13 -1.35 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.81 7.69 -51.93 -0.40 0.41 16 35 H 0.08 0.64 4.96 -51.93 -0.26 0.39 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.77 7.98 -51.93 -0.41 0.35 16 39 H 0.06 1.11 6.32 -51.93 -0.33 0.78 16 40 H 0.07 0.98 7.57 -51.93 -0.39 0.59 16 41 H 0.09 1.28 7.92 -51.93 -0.41 0.87 16 42 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 43 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.07 1.50 6.00 -51.93 -0.31 1.19 16 46 H 0.07 1.14 7.85 -51.93 -0.41 0.73 16 47 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 48 H 0.08 1.23 7.28 -51.93 -0.38 0.85 16 49 H 0.09 0.55 6.65 -51.93 -0.35 0.20 16 50 H 0.08 0.78 7.78 -51.93 -0.40 0.38 16 LS Contribution 381.27 15.07 5.75 5.75 Total: -1.00 -36.84 381.27 -8.93 -45.77 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -8.01 Total: 10.97 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -0.60 Total: 11.37 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.62 Total: -56.75 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.74 Total: -31.90 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.71 Total: 14.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.84 -8.93 -45.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196574425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.656 kcal (2) G-P(sol) polarization free energy of solvation -36.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds