Wall clock time and date at job start Tue Mar 31 2020 23:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.43609 * 2 1 4 4 C 1.54098 * 110.48795 * 122.69139 * 2 1 3 5 5 O 1.43887 * 107.37577 * 116.78266 * 4 2 1 6 6 C 1.44380 * 106.89909 * 26.26739 * 5 4 2 7 7 H 1.09003 * 110.61668 * 78.74767 * 6 5 4 8 8 C 1.50708 * 110.61529 * 201.58239 * 6 5 4 9 9 O 1.21273 * 120.00237 * 1.42739 * 8 6 5 10 10 N 1.34777 * 119.99401 * 181.41881 * 8 6 5 11 11 C 1.47566 * 118.71937 * 359.90859 * 10 8 6 12 12 C 1.53799 * 111.26948 * 138.34252 * 11 10 8 13 13 C 1.51269 * 109.63127 * 319.97437 * 12 11 10 14 14 N 1.46199 * 109.09085 * 92.41760 * 13 12 11 15 15 C 1.46899 * 110.99933 * 144.76720 * 14 13 12 16 16 C 1.50698 * 109.47411 * 64.98682 * 15 14 13 17 17 O 1.21293 * 119.99825 * 0.02562 * 16 15 14 18 18 N 1.34781 * 120.00014 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99965 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99702 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00123 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99989 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99994 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46856 * 90.00235 * 23 21 19 25 25 H 1.48498 * 109.47275 * 210.00734 * 23 21 19 26 26 H 1.48500 * 109.46902 * 330.00597 * 23 21 19 27 27 C 1.41444 * 116.34502 * 272.96579 * 14 13 12 28 28 C 1.44888 * 118.74582 * 179.97438 * 10 8 6 29 29 C 1.54812 * 110.48671 * 237.45975 * 2 1 3 30 30 H 1.09001 * 109.47150 * 182.54034 * 1 2 3 31 31 H 1.08998 * 109.46920 * 302.54232 * 1 2 3 32 32 H 1.09002 * 109.47020 * 62.53985 * 1 2 3 33 33 H 1.09005 * 109.87819 * 236.06651 * 4 2 1 34 34 H 1.08990 * 109.87909 * 357.07126 * 4 2 1 35 35 H 1.09002 * 109.11428 * 17.89396 * 11 10 8 36 36 H 1.09001 * 109.09808 * 258.77935 * 11 10 8 37 37 H 1.09004 * 109.44577 * 199.92576 * 12 11 10 38 38 H 1.09000 * 109.41920 * 80.01283 * 12 11 10 39 39 H 1.09001 * 109.53655 * 332.53699 * 13 12 11 40 40 H 1.08998 * 109.59764 * 212.33784 * 13 12 11 41 41 H 1.09000 * 109.47437 * 184.99183 * 15 14 13 42 42 H 1.09003 * 109.47054 * 304.98778 * 15 14 13 43 43 H 0.97000 * 119.99918 * 0.02562 * 18 16 15 44 44 H 0.97003 * 119.99841 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.38943 * 303.32079 * 27 14 13 46 46 H 1.09003 * 109.38479 * 183.64052 * 27 14 13 47 47 H 1.09002 * 109.43530 * 149.63792 * 28 10 8 48 48 H 1.08996 * 109.43119 * 29.73138 * 28 10 8 49 49 H 1.09001 * 110.90639 * 102.24624 * 29 2 1 50 50 H 1.08993 * 110.91037 * 338.64007 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0694 -0.7797 1.2148 5 8 2.7994 -1.9118 0.7092 6 6 3.2660 -1.5552 -0.6098 7 1 4.1464 -0.9159 -0.5456 8 6 3.5673 -2.7910 -1.4181 9 8 3.3805 -3.8894 -0.9391 10 7 4.0444 -2.6754 -2.6733 11 6 4.2590 -1.3252 -3.2287 12 6 5.5776 -1.2492 -4.0167 13 6 6.6498 -2.0304 -3.2899 14 7 6.6741 -3.3995 -3.8019 15 6 8.0448 -3.9270 -3.8295 16 6 8.5689 -4.0379 -2.4209 17 8 7.8691 -3.7102 -1.4860 18 7 9.8148 -4.5022 -2.2000 19 6 10.2913 -4.6036 -0.9185 20 1 9.6686 -4.3110 -0.0861 21 6 11.5759 -5.0818 -0.6908 22 7 12.0325 -5.1794 0.5376 23 14 12.6534 -5.5871 -2.1307 24 1 13.4394 -4.4162 -2.5956 25 1 13.5791 -6.6660 -1.7015 26 1 11.7980 -6.0810 -3.2396 27 6 5.7906 -4.3160 -3.1853 28 6 4.3253 -3.8812 -3.4258 29 6 2.0718 -0.7801 -1.2225 30 1 -0.3633 -1.0267 0.0455 31 1 -0.3633 0.5528 0.8663 32 1 -0.3633 0.4739 -0.9119 33 1 2.7351 -0.1432 1.7979 34 1 1.2402 -1.1166 1.8368 35 1 4.2893 -0.6039 -2.4120 36 1 3.4313 -1.0772 -3.8931 37 1 5.8863 -0.2078 -4.1081 38 1 5.4308 -1.6725 -5.0104 39 1 6.4301 -2.0444 -2.2223 40 1 7.6198 -1.5618 -3.4563 41 1 8.0458 -4.9121 -4.2961 42 1 8.6820 -3.2531 -4.4022 43 1 10.3742 -4.7647 -2.9477 44 1 12.9292 -5.5135 0.6966 45 1 5.9884 -4.3443 -2.1138 46 1 5.9473 -5.3090 -3.6068 47 1 4.1737 -3.6895 -4.4880 48 1 3.6537 -4.6759 -3.1012 49 1 2.4103 -0.0965 -2.0012 50 1 1.3197 -1.4672 -1.6100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196574425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:37 Heat of formation + Delta-G solvation = -120.732725 kcal Electronic energy + Delta-G solvation = -31415.344755 eV Core-core repulsion = 27249.032700 eV Total energy + Delta-G solvation = -4166.312055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.92814 -40.92219 -39.86222 -38.53251 -36.49637 -35.74590 -34.53352 -33.82415 -33.61861 -32.00009 -30.14479 -28.09475 -27.24169 -27.04402 -25.80149 -24.78040 -22.83789 -21.90519 -21.53278 -21.27187 -20.22877 -19.95629 -18.68733 -18.04769 -17.60312 -17.39965 -16.85129 -16.65710 -16.54480 -16.26290 -16.02151 -15.86679 -15.62913 -15.18583 -14.96170 -14.84870 -14.46239 -14.41533 -14.27989 -14.01900 -13.64175 -13.51961 -13.38967 -13.16022 -13.02217 -12.80024 -12.71326 -12.47939 -12.39598 -12.26461 -12.07877 -12.03108 -11.98137 -11.79977 -11.77323 -11.59359 -11.48532 -10.94702 -10.92220 -10.60713 -10.28584 -9.68390 -9.05903 -8.46591 -6.07906 1.26505 1.32072 1.41637 1.44394 1.83836 1.90254 2.19157 2.87903 2.93199 2.97950 3.10396 3.24654 3.50600 3.76143 3.84955 3.91749 3.98970 4.01846 4.16407 4.19712 4.22810 4.23067 4.36039 4.46223 4.53883 4.55012 4.62329 4.62748 4.69097 4.71736 4.74731 4.81112 4.88696 4.90571 4.93252 5.03658 5.12002 5.14675 5.21757 5.35652 5.39125 5.48382 5.62745 5.79314 5.88194 6.01840 6.22456 6.40360 6.53720 6.83719 7.10425 7.34429 7.92681 8.71693 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002859 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.405458 B = 9790.364988 C =10685.171940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 H 0.114 0.886 4 C 0.033 3.967 5 O -0.396 6.396 6 C 0.055 3.945 7 H 0.100 0.900 8 C 0.504 3.496 9 O -0.582 6.582 10 N -0.595 5.595 11 C 0.096 3.904 12 C -0.119 4.119 13 C 0.067 3.933 14 N -0.512 5.512 15 C 0.053 3.947 16 C 0.412 3.588 17 O -0.620 6.620 18 N -0.589 5.589 19 C -0.330 4.330 20 H 0.045 0.955 21 C -0.018 4.018 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.253 1.253 25 H -0.276 1.276 26 H -0.230 1.230 27 C 0.046 3.954 28 C 0.129 3.871 29 C -0.127 4.127 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.012 0.988 40 H 0.064 0.936 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.003 0.997 46 H 0.083 0.917 47 H 0.121 0.879 48 H 0.068 0.932 49 H 0.127 0.873 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.346 14.819 -16.871 29.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 H 0.132 0.868 4 C -0.043 4.043 5 O -0.315 6.315 6 C -0.005 4.005 7 H 0.117 0.883 8 C 0.292 3.708 9 O -0.462 6.462 10 N -0.328 5.328 11 C -0.024 4.024 12 C -0.157 4.157 13 C -0.061 4.061 14 N -0.234 5.234 15 C -0.079 4.079 16 C 0.200 3.800 17 O -0.505 6.505 18 N -0.231 5.231 19 C -0.459 4.459 20 H 0.064 0.936 21 C -0.217 4.217 22 N -0.577 5.577 23 Si 0.789 3.211 24 H -0.177 1.177 25 H -0.201 1.201 26 H -0.153 1.153 27 C -0.085 4.085 28 C 0.006 3.994 29 C -0.164 4.164 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.030 0.970 40 H 0.083 0.917 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.021 0.979 46 H 0.101 0.899 47 H 0.139 0.861 48 H 0.086 0.914 49 H 0.145 0.855 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.916 14.269 -16.200 29.371 hybrid contribution 1.571 -0.936 1.578 2.415 sum -18.345 13.332 -14.622 26.983 Atomic orbital electron populations 1.21816 0.92609 1.01840 1.03512 1.22574 0.98095 1.00600 0.92309 0.86830 1.23656 0.95940 0.87308 0.97371 1.89046 1.72744 1.39496 1.30228 1.23142 1.00175 0.93151 0.84063 0.88289 1.20906 0.76741 0.90509 0.82657 1.90676 1.54458 1.30243 1.70786 1.47834 1.63013 1.08766 1.13188 1.22548 0.99616 0.80797 0.99466 1.21882 0.92233 1.01561 1.00057 1.21568 0.99976 0.87888 0.96672 1.59169 1.04640 1.02717 1.56846 1.22361 0.90668 1.04425 0.90397 1.22550 0.81924 0.81450 0.94091 1.90570 1.58035 1.54524 1.47395 1.42211 1.14598 1.59340 1.06929 1.18957 0.99369 1.43099 0.84504 0.93647 1.26226 0.98123 0.96479 1.00830 1.69827 1.18980 1.46473 1.22467 0.85299 0.78537 0.79308 0.77930 1.17698 1.20076 1.15303 1.21734 0.93762 0.96027 0.96929 1.21486 0.93603 0.86697 0.97602 1.23312 0.94929 0.98933 0.99267 0.93723 0.91111 0.90444 0.91386 0.89167 0.89448 0.87342 0.87333 0.88475 0.96994 0.91731 0.86436 0.85450 0.77387 0.91108 0.97921 0.89869 0.86122 0.91398 0.85515 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.92 71.98 0.64 -0.83 16 2 C -0.12 -1.54 3.64 -9.80 -0.04 -1.58 16 3 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 4 C 0.03 0.70 7.37 72.35 0.53 1.23 16 5 O -0.40 -13.18 10.81 -130.75 -1.41 -14.60 16 6 C 0.06 1.48 2.75 30.53 0.08 1.56 16 7 H 0.10 2.47 7.21 -2.39 -0.02 2.45 16 8 C 0.50 17.15 7.06 87.66 0.62 17.77 16 9 O -0.58 -26.71 16.00 15.22 0.24 -26.47 16 10 N -0.60 -15.40 2.18 -818.11 -1.78 -17.19 16 11 C 0.10 1.46 4.88 86.44 0.42 1.88 16 12 C -0.12 -1.85 5.78 30.30 0.18 -1.68 16 13 C 0.07 1.86 4.21 85.87 0.36 2.22 16 14 N -0.51 -14.63 3.99 -916.32 -3.66 -18.29 16 15 C 0.05 1.59 5.58 85.56 0.48 2.07 16 16 C 0.41 18.89 7.24 87.66 0.63 19.52 16 17 O -0.62 -35.23 12.15 -3.07 -0.04 -35.27 16 18 N -0.59 -28.47 5.09 -306.98 -1.56 -30.03 16 19 C -0.33 -20.04 10.16 84.04 0.85 -19.19 16 20 H 0.05 3.34 7.39 -2.91 -0.02 3.31 16 21 C -0.02 -1.04 5.50 84.93 0.47 -0.58 16 22 N -0.94 -58.38 13.96 21.66 0.30 -58.08 16 23 Si 0.97 39.60 27.74 68.60 1.90 41.50 16 24 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 27 C 0.05 1.53 4.92 87.89 0.43 1.96 16 28 C 0.13 3.43 5.51 87.27 0.48 3.91 16 29 C -0.13 -1.94 5.38 31.90 0.17 -1.76 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.09 1.75 7.69 -2.39 -0.02 1.73 16 35 H 0.09 1.17 4.96 -2.39 -0.01 1.16 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.10 1.27 7.98 -2.39 -0.02 1.26 16 39 H 0.01 0.45 6.32 -2.39 -0.02 0.43 16 40 H 0.06 1.80 7.57 -2.39 -0.02 1.78 16 41 H 0.12 2.95 7.92 -2.39 -0.02 2.93 16 42 H 0.13 2.97 7.93 -2.39 -0.02 2.95 16 43 H 0.39 15.47 5.76 -92.71 -0.53 14.93 16 44 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 45 H 0.00 0.12 6.00 -2.39 -0.01 0.11 16 46 H 0.08 2.55 7.85 -2.39 -0.02 2.53 16 47 H 0.12 2.23 8.11 -2.39 -0.02 2.21 16 48 H 0.07 2.04 7.28 -2.39 -0.02 2.03 16 49 H 0.13 0.96 6.65 -2.39 -0.02 0.95 16 50 H 0.08 1.31 7.78 -2.39 -0.02 1.29 16 Total: -1.00 -96.27 381.27 0.67 -95.60 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.36 Total: 36.31 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 6.32 Total: 26.52 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -6.70 Total: -123.58 kcal Atomic # 8 Polarization: -75.13 SS G_CDS: -1.21 Total: -76.34 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.90 Total: 41.50 kcal Total: -96.27 0.67 -95.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196574425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.138 kcal (2) G-P(sol) polarization free energy of solvation -96.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds