Wall clock time and date at job start Tue Mar 31 2020 23:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.80405 * 2 1 4 4 C 1.54996 * 110.90580 * 236.33198 * 2 1 3 5 5 O 1.44381 * 103.48786 * 204.77781 * 4 2 1 6 6 C 1.43742 * 106.97485 * 40.06550 * 5 4 2 7 7 H 1.09000 * 110.00716 * 92.98259 * 6 5 4 8 8 C 1.50704 * 109.87508 * 214.05939 * 6 5 4 9 9 O 1.21279 * 119.99972 * 7.21185 * 8 6 5 10 10 N 1.34777 * 119.99704 * 187.20759 * 8 6 5 11 11 C 1.44698 * 118.59737 * 175.39843 * 10 8 6 12 12 C 1.54940 * 109.51391 * 269.14851 * 11 10 8 13 13 C 1.47540 * 109.69375 * 290.43672 * 12 11 10 14 14 N 1.46264 * 114.36979 * 62.24748 * 13 12 11 15 15 C 1.46898 * 111.00265 * 148.55499 * 14 13 12 16 16 C 1.50701 * 109.47190 * 189.99455 * 15 14 13 17 17 O 1.21292 * 120.00141 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99788 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99754 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99932 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99570 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00238 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99779 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46784 * 89.99639 * 23 21 19 25 25 H 1.48491 * 109.47238 * 210.00033 * 23 21 19 26 26 H 1.48501 * 109.46802 * 330.00165 * 23 21 19 27 27 C 1.44766 * 110.64186 * 272.25215 * 14 13 12 28 28 C 1.47776 * 118.55024 * 355.39338 * 10 8 6 29 29 C 1.54102 * 107.29390 * 333.48133 * 6 5 4 30 30 H 1.08995 * 109.47239 * 296.37496 * 1 2 3 31 31 H 1.09004 * 109.47325 * 56.37371 * 1 2 3 32 32 H 1.09006 * 109.47432 * 176.36906 * 1 2 3 33 33 H 1.09004 * 110.62094 * 323.28124 * 4 2 1 34 34 H 1.09001 * 110.61699 * 86.11883 * 4 2 1 35 35 H 1.09005 * 109.51376 * 149.11026 * 11 10 8 36 36 H 1.09002 * 109.42468 * 29.14183 * 11 10 8 37 37 H 1.09006 * 109.43028 * 170.38209 * 12 11 10 38 38 H 1.09003 * 109.42682 * 50.49642 * 12 11 10 39 39 H 1.09003 * 108.50554 * 183.50858 * 13 12 11 40 40 H 1.08995 * 108.50764 * 300.97806 * 13 12 11 41 41 H 1.08997 * 109.47153 * 309.99783 * 15 14 13 42 42 H 1.08999 * 109.46914 * 69.99755 * 15 14 13 43 43 H 0.96995 * 120.00283 * 0.02562 * 18 16 15 44 44 H 0.96997 * 119.99571 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.44100 * 214.23283 * 27 14 13 46 46 H 1.09008 * 109.43679 * 334.09907 * 27 14 13 47 47 H 1.09003 * 109.06197 * 17.58381 * 28 10 8 48 48 H 1.08992 * 109.06643 * 258.64904 * 28 10 8 49 49 H 1.08999 * 110.48743 * 120.70749 * 29 6 5 50 50 H 1.08997 * 110.48829 * 243.35876 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0831 -0.8027 -1.2051 5 8 3.3941 -1.2146 -0.7621 6 6 3.2717 -1.5881 0.6206 7 1 3.0837 -2.6586 0.7025 8 6 4.5349 -1.2318 1.3612 9 8 5.4035 -0.5927 0.8063 10 7 4.6993 -1.6235 2.6403 11 6 5.9635 -1.3532 3.2904 12 6 6.9203 -2.5537 3.0809 13 6 6.4380 -3.7145 3.8534 14 7 5.1200 -4.2031 3.4492 15 6 5.0114 -5.6540 3.6516 16 6 3.7476 -6.1584 3.0039 17 8 3.0101 -5.3853 2.4298 18 7 3.4374 -7.4686 3.0619 19 6 2.2878 -7.9276 2.4722 20 1 1.6312 -7.2393 1.9610 21 6 1.9677 -9.2784 2.5324 22 7 2.7665 -10.1159 3.1549 23 14 0.4019 -9.9039 1.7284 24 1 0.6868 -10.2885 0.3227 25 1 -0.0988 -11.0868 2.4735 26 1 -0.6272 -8.8335 1.7498 27 6 4.0744 -3.5001 4.1622 28 6 3.5801 -2.3104 3.3180 29 6 2.0824 -0.8009 1.2042 30 1 -0.3633 0.4565 0.9206 31 1 -0.3634 0.5691 -0.8557 32 1 -0.3634 -1.0256 -0.0651 33 1 1.4561 -1.6709 -1.4082 34 1 2.1555 -0.1680 -2.0882 35 1 5.7992 -1.2016 4.3572 36 1 6.4076 -0.4554 2.8603 37 1 7.9207 -2.2835 3.4191 38 1 6.9528 -2.8110 2.0221 39 1 7.1567 -4.5265 3.7427 40 1 6.3957 -3.4360 4.9063 41 1 5.8724 -6.1489 3.2024 42 1 4.9839 -5.8708 4.7194 43 1 4.0273 -8.0869 3.5207 44 1 2.5432 -11.0589 3.1965 45 1 3.2440 -4.1803 4.3517 46 1 4.4658 -3.1336 5.1113 47 1 2.8785 -2.6738 2.5672 48 1 3.0682 -1.6009 3.9680 49 1 1.3245 -1.4838 1.5881 50 1 2.4209 -0.1246 1.9891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196574429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:44 Heat of formation + Delta-G solvation = -97.577443 kcal Electronic energy + Delta-G solvation = -31613.076658 eV Core-core repulsion = 27447.768691 eV Total energy + Delta-G solvation = -4165.307967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.65225 -39.29440 -38.35101 -37.17054 -34.83629 -33.94962 -33.57608 -33.00869 -31.28597 -30.28070 -29.14826 -26.76256 -26.34025 -25.64172 -24.10425 -23.68047 -21.77920 -20.78662 -20.49861 -19.38821 -18.87347 -17.90623 -17.23562 -16.62096 -16.13906 -16.06920 -15.75947 -15.46175 -14.83829 -14.69089 -14.51852 -14.43126 -14.05519 -13.97693 -13.83429 -13.61211 -13.32719 -13.10126 -12.98198 -12.68166 -12.38241 -12.24030 -12.17434 -11.77753 -11.60331 -11.47758 -11.39605 -11.31861 -11.17457 -11.01168 -10.87259 -10.83224 -10.79369 -10.61835 -10.43090 -10.25495 -9.96005 -9.52332 -9.21435 -8.47594 -8.43772 -8.00498 -7.94697 -6.45260 -3.86129 2.74898 3.07250 3.14889 3.24023 3.28515 3.84237 3.88670 3.99850 4.19631 4.33137 4.56335 4.67799 4.80998 4.85330 5.01235 5.09120 5.11859 5.15566 5.17910 5.22007 5.25986 5.36082 5.43261 5.48590 5.53313 5.55444 5.58685 5.66959 5.68845 5.71481 5.75580 5.80274 5.84085 5.88727 5.93270 6.01092 6.04708 6.08788 6.11541 6.24854 6.34193 6.70566 6.90428 7.24233 7.39877 7.50794 7.51413 8.02257 8.40428 8.57450 9.14195 9.50680 10.01465 10.72445 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.003775 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.634628 B = 7415.171485 C = 9590.523355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 H 0.084 0.916 4 C 0.048 3.952 5 O -0.350 6.350 6 C 0.059 3.941 7 H 0.109 0.891 8 C 0.521 3.479 9 O -0.535 6.535 10 N -0.590 5.590 11 C 0.120 3.880 12 C -0.132 4.132 13 C 0.060 3.940 14 N -0.511 5.511 15 C 0.048 3.952 16 C 0.443 3.557 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.054 3.946 28 C 0.117 3.883 29 C -0.141 4.141 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.032 0.968 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.092 0.908 46 H 0.034 0.966 47 H 0.097 0.903 48 H 0.060 0.940 49 H 0.090 0.910 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 16.495 2.652 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 H 0.103 0.897 4 C -0.028 4.028 5 O -0.267 6.267 6 C -0.002 4.002 7 H 0.127 0.873 8 C 0.308 3.692 9 O -0.411 6.411 10 N -0.323 5.323 11 C -0.003 4.003 12 C -0.171 4.171 13 C -0.068 4.068 14 N -0.235 5.235 15 C -0.084 4.084 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.075 4.075 28 C -0.006 4.006 29 C -0.179 4.179 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.052 0.948 47 H 0.115 0.885 48 H 0.078 0.922 49 H 0.109 0.891 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.213 17.221 1.403 17.321 hybrid contribution -0.406 -1.257 0.977 1.643 sum 0.807 15.964 2.380 16.161 Atomic orbital electron populations 1.21730 0.93648 1.02523 1.02050 1.22730 0.96649 1.00176 0.94884 0.89722 1.23690 0.84356 0.97699 0.97089 1.88974 1.28765 1.86279 1.22730 1.22730 0.93118 1.01099 0.83260 0.87336 1.20413 0.88287 0.78845 0.81641 1.90652 1.44187 1.39496 1.66810 1.47478 1.14929 1.57652 1.12270 1.21376 0.83910 0.98139 0.96916 1.21365 0.98168 0.95170 1.02430 1.21007 0.91024 0.97938 0.96840 1.60354 1.01882 1.02812 1.58451 1.21956 0.99271 0.88161 0.98963 1.19705 0.88038 0.83310 0.86075 1.90468 1.52637 1.55596 1.47626 1.41876 1.22441 1.06362 1.49346 1.19670 0.99254 0.92566 1.31274 0.87914 1.25253 0.99286 0.95842 0.97490 1.69609 1.37675 1.04203 1.42788 0.85878 0.81284 0.78315 0.78933 1.20392 1.20965 1.19448 1.22259 0.96136 0.95818 0.93278 1.22203 0.88103 0.92761 0.97542 1.23051 0.96942 0.99251 0.98626 0.92189 0.92307 0.91934 0.91652 0.88912 0.91269 0.89953 0.90595 0.90709 0.91705 0.94965 0.89391 0.93461 0.77536 0.91864 0.88988 0.94771 0.88514 0.92214 0.89130 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.13 -1.30 3.72 -88.61 -0.33 -1.63 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.05 0.58 7.17 38.21 0.27 0.86 16 5 O -0.35 -5.83 10.74 -54.71 -0.59 -6.42 16 6 C 0.06 0.91 2.94 -27.31 -0.08 0.82 16 7 H 0.11 1.85 7.17 -51.93 -0.37 1.48 16 8 C 0.52 8.66 6.79 -10.98 -0.07 8.59 16 9 O -0.53 -10.60 15.92 -13.93 -0.22 -10.82 16 10 N -0.59 -8.31 2.53 -172.20 -0.44 -8.75 16 11 C 0.12 1.48 5.48 -3.98 -0.02 1.46 16 12 C -0.13 -1.62 6.03 -28.34 -0.17 -1.79 16 13 C 0.06 0.74 4.96 -6.80 -0.03 0.71 16 14 N -0.51 -7.89 3.90 -241.04 -0.94 -8.83 16 15 C 0.05 0.79 5.25 -4.98 -0.03 0.77 16 16 C 0.44 9.72 7.14 -10.99 -0.08 9.65 16 17 O -0.58 -14.06 14.50 5.55 0.08 -13.98 16 18 N -0.56 -13.60 5.29 -10.96 -0.06 -13.66 16 19 C -0.30 -7.96 9.68 -14.93 -0.14 -8.11 16 20 H 0.10 2.86 7.16 -52.49 -0.38 2.49 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -23.97 13.05 55.50 0.72 -23.24 16 23 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 C 0.05 0.77 4.62 -4.43 -0.02 0.75 16 28 C 0.12 1.54 5.57 -2.80 -0.02 1.52 16 29 C -0.14 -1.62 4.74 -25.20 -0.12 -1.74 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 36 H 0.08 1.07 7.19 -51.93 -0.37 0.70 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.77 7.44 -51.93 -0.39 0.38 16 40 H 0.03 0.36 7.18 -51.93 -0.37 -0.02 16 41 H 0.09 1.38 7.75 -51.93 -0.40 0.98 16 42 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 43 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 44 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.09 1.50 6.25 -51.93 -0.32 1.17 16 46 H 0.03 0.41 7.14 -51.92 -0.37 0.04 16 47 H 0.10 1.43 4.93 -51.93 -0.26 1.18 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 50 H 0.08 0.85 7.58 -51.93 -0.39 0.45 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -32.49 388.45 -9.32 -41.81 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -8.11 Total: 11.01 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -0.60 Total: 11.54 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.71 Total: -54.48 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.73 Total: -31.21 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.49 -9.32 -41.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196574429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.769 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds