Wall clock time and date at job start Tue Mar 31 2020 23:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.80405 * 2 1 4 4 C 1.54996 * 110.90580 * 236.33198 * 2 1 3 5 5 O 1.44381 * 103.48786 * 204.77781 * 4 2 1 6 6 C 1.43742 * 106.97485 * 40.06550 * 5 4 2 7 7 H 1.09000 * 110.00716 * 92.98259 * 6 5 4 8 8 C 1.50704 * 109.87508 * 214.05939 * 6 5 4 9 9 O 1.21279 * 119.99972 * 7.21185 * 8 6 5 10 10 N 1.34777 * 119.99704 * 187.20759 * 8 6 5 11 11 C 1.44698 * 118.59737 * 175.39843 * 10 8 6 12 12 C 1.54940 * 109.51391 * 269.14851 * 11 10 8 13 13 C 1.47540 * 109.69375 * 290.43672 * 12 11 10 14 14 N 1.46264 * 114.36979 * 62.24748 * 13 12 11 15 15 C 1.46898 * 111.00265 * 148.55499 * 14 13 12 16 16 C 1.50701 * 109.47190 * 189.99455 * 15 14 13 17 17 O 1.21292 * 120.00141 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99788 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99754 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99932 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99570 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00238 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99779 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46784 * 89.99639 * 23 21 19 25 25 H 1.48491 * 109.47238 * 210.00033 * 23 21 19 26 26 H 1.48501 * 109.46802 * 330.00165 * 23 21 19 27 27 C 1.44766 * 110.64186 * 272.25215 * 14 13 12 28 28 C 1.47776 * 118.55024 * 355.39338 * 10 8 6 29 29 C 1.54102 * 107.29390 * 333.48133 * 6 5 4 30 30 H 1.08995 * 109.47239 * 296.37496 * 1 2 3 31 31 H 1.09004 * 109.47325 * 56.37371 * 1 2 3 32 32 H 1.09006 * 109.47432 * 176.36906 * 1 2 3 33 33 H 1.09004 * 110.62094 * 323.28124 * 4 2 1 34 34 H 1.09001 * 110.61699 * 86.11883 * 4 2 1 35 35 H 1.09005 * 109.51376 * 149.11026 * 11 10 8 36 36 H 1.09002 * 109.42468 * 29.14183 * 11 10 8 37 37 H 1.09006 * 109.43028 * 170.38209 * 12 11 10 38 38 H 1.09003 * 109.42682 * 50.49642 * 12 11 10 39 39 H 1.09003 * 108.50554 * 183.50858 * 13 12 11 40 40 H 1.08995 * 108.50764 * 300.97806 * 13 12 11 41 41 H 1.08997 * 109.47153 * 309.99783 * 15 14 13 42 42 H 1.08999 * 109.46914 * 69.99755 * 15 14 13 43 43 H 0.96995 * 120.00283 * 0.02562 * 18 16 15 44 44 H 0.96997 * 119.99571 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.44100 * 214.23283 * 27 14 13 46 46 H 1.09008 * 109.43679 * 334.09907 * 27 14 13 47 47 H 1.09003 * 109.06197 * 17.58381 * 28 10 8 48 48 H 1.08992 * 109.06643 * 258.64904 * 28 10 8 49 49 H 1.08999 * 110.48743 * 120.70749 * 29 6 5 50 50 H 1.08997 * 110.48829 * 243.35876 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0831 -0.8027 -1.2051 5 8 3.3941 -1.2146 -0.7621 6 6 3.2717 -1.5881 0.6206 7 1 3.0837 -2.6586 0.7025 8 6 4.5349 -1.2318 1.3612 9 8 5.4035 -0.5927 0.8063 10 7 4.6993 -1.6235 2.6403 11 6 5.9635 -1.3532 3.2904 12 6 6.9203 -2.5537 3.0809 13 6 6.4380 -3.7145 3.8534 14 7 5.1200 -4.2031 3.4492 15 6 5.0114 -5.6540 3.6516 16 6 3.7476 -6.1584 3.0039 17 8 3.0101 -5.3853 2.4298 18 7 3.4374 -7.4686 3.0619 19 6 2.2878 -7.9276 2.4722 20 1 1.6312 -7.2393 1.9610 21 6 1.9677 -9.2784 2.5324 22 7 2.7665 -10.1159 3.1549 23 14 0.4019 -9.9039 1.7284 24 1 0.6868 -10.2885 0.3227 25 1 -0.0988 -11.0868 2.4735 26 1 -0.6272 -8.8335 1.7498 27 6 4.0744 -3.5001 4.1622 28 6 3.5801 -2.3104 3.3180 29 6 2.0824 -0.8009 1.2042 30 1 -0.3633 0.4565 0.9206 31 1 -0.3634 0.5691 -0.8557 32 1 -0.3634 -1.0256 -0.0651 33 1 1.4561 -1.6709 -1.4082 34 1 2.1555 -0.1680 -2.0882 35 1 5.7992 -1.2016 4.3572 36 1 6.4076 -0.4554 2.8603 37 1 7.9207 -2.2835 3.4191 38 1 6.9528 -2.8110 2.0221 39 1 7.1567 -4.5265 3.7427 40 1 6.3957 -3.4360 4.9063 41 1 5.8724 -6.1489 3.2024 42 1 4.9839 -5.8708 4.7194 43 1 4.0273 -8.0869 3.5207 44 1 2.5432 -11.0589 3.1965 45 1 3.2440 -4.1803 4.3517 46 1 4.4658 -3.1336 5.1113 47 1 2.8785 -2.6738 2.5672 48 1 3.0682 -1.6009 3.9680 49 1 1.3245 -1.4838 1.5881 50 1 2.4209 -0.1246 1.9891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196574429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:43 Heat of formation + Delta-G solvation = -120.076559 kcal Electronic energy + Delta-G solvation = -31614.052293 eV Core-core repulsion = 27447.768691 eV Total energy + Delta-G solvation = -4166.283601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81701 -40.58461 -39.75158 -38.57842 -36.17421 -35.72930 -34.55822 -34.09169 -33.21896 -31.34988 -30.44253 -28.02422 -27.25491 -26.91602 -25.71684 -24.77789 -22.89482 -21.82045 -21.50520 -20.97147 -20.14497 -19.79257 -18.40140 -17.80027 -17.65961 -17.26276 -16.83011 -16.67459 -16.45590 -16.08484 -15.90021 -15.56967 -15.55637 -15.29194 -14.96425 -14.83278 -14.43187 -14.18524 -14.08564 -13.79307 -13.62881 -13.55145 -13.45793 -13.12076 -12.97256 -12.84190 -12.58474 -12.46895 -12.37119 -12.26649 -12.18205 -12.11274 -11.86135 -11.75387 -11.73175 -11.62345 -11.41790 -11.09298 -10.47266 -10.21475 -9.95024 -9.57695 -9.15092 -8.42951 -5.90401 1.39269 1.43220 1.49497 1.54848 1.94886 2.11503 2.30065 2.74898 2.94183 3.25116 3.30926 3.45379 3.54214 3.76339 3.82876 3.90402 4.03130 4.06591 4.13462 4.23373 4.29268 4.35823 4.41399 4.50374 4.51164 4.56376 4.61119 4.62395 4.68318 4.71453 4.74282 4.75587 4.79819 4.85612 4.95593 4.98149 5.05346 5.05869 5.18992 5.31796 5.34860 5.44881 5.63704 5.82663 5.94836 6.13861 6.31758 6.34459 6.65332 7.16778 7.17720 7.62485 8.17283 8.74638 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.003775 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.634628 B = 7415.171485 C = 9590.523355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 H 0.088 0.912 4 C 0.038 3.962 5 O -0.386 6.386 6 C 0.059 3.941 7 H 0.081 0.919 8 C 0.514 3.486 9 O -0.576 6.576 10 N -0.581 5.581 11 C 0.114 3.886 12 C -0.126 4.126 13 C 0.059 3.941 14 N -0.536 5.536 15 C 0.061 3.939 16 C 0.443 3.557 17 O -0.605 6.605 18 N -0.578 5.578 19 C -0.325 4.325 20 H 0.081 0.919 21 C -0.014 4.014 22 N -0.924 5.924 23 Si 0.988 3.012 24 H -0.276 1.276 25 H -0.273 1.273 26 H -0.270 1.270 27 C 0.056 3.944 28 C 0.117 3.883 29 C -0.132 4.132 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.394 0.606 44 H 0.275 0.725 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.842 17.494 4.360 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.136 4.136 3 H 0.106 0.894 4 C -0.038 4.038 5 O -0.305 6.305 6 C -0.002 4.002 7 H 0.099 0.901 8 C 0.302 3.698 9 O -0.456 6.456 10 N -0.313 5.313 11 C -0.008 4.008 12 C -0.165 4.165 13 C -0.068 4.068 14 N -0.260 5.260 15 C -0.070 4.070 16 C 0.230 3.770 17 O -0.490 6.490 18 N -0.215 5.215 19 C -0.454 4.454 20 H 0.099 0.901 21 C -0.213 4.213 22 N -0.565 5.565 23 Si 0.812 3.188 24 H -0.202 1.202 25 H -0.198 1.198 26 H -0.194 1.194 27 C -0.073 4.073 28 C -0.006 4.006 29 C -0.170 4.170 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.227 0.773 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.113 0.887 49 H 0.117 0.883 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.930 18.217 3.148 18.510 hybrid contribution -0.266 -1.516 0.428 1.597 sum 0.664 16.701 3.577 17.093 Atomic orbital electron populations 1.21707 0.91644 1.02684 1.03371 1.22714 0.98148 0.99649 0.93109 0.89365 1.23968 0.82856 0.98412 0.98517 1.88930 1.31438 1.86558 1.23565 1.22680 0.94272 1.00041 0.83253 0.90094 1.20690 0.88166 0.78572 0.82396 1.90616 1.45400 1.41700 1.67882 1.47557 1.15814 1.56454 1.11505 1.21596 0.82979 0.97780 0.98483 1.21346 0.99864 0.95172 1.00100 1.21062 0.89400 0.98081 0.98226 1.60321 1.03795 1.02065 1.59868 1.21789 0.96228 0.89230 0.99750 1.20710 0.89162 0.82343 0.84743 1.90456 1.54027 1.56120 1.48408 1.41948 1.22181 1.07312 1.50109 1.19630 1.00400 0.92913 1.32489 0.90087 1.25970 1.02000 0.95592 0.97769 1.69674 1.38906 1.04479 1.43456 0.84990 0.77852 0.77850 0.78059 1.20165 1.19823 1.19433 1.22250 0.95132 0.95295 0.94607 1.22274 0.87548 0.93405 0.97324 1.23040 0.95539 0.99197 0.99224 0.90966 0.90884 0.92367 0.91443 0.87311 0.87894 0.90899 0.87537 0.94609 0.90941 0.92108 0.88261 0.90954 0.77271 0.91529 0.91543 0.91550 0.90706 0.88713 0.88303 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 2 C -0.12 -2.32 3.72 -9.49 -0.04 -2.36 16 3 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.04 0.93 7.17 72.67 0.52 1.45 16 5 O -0.39 -13.49 10.74 -130.35 -1.40 -14.89 16 6 C 0.06 1.87 2.94 30.22 0.09 1.96 16 7 H 0.08 2.99 7.17 -2.39 -0.02 2.97 16 8 C 0.51 17.49 6.79 87.66 0.60 18.09 16 9 O -0.58 -23.61 15.92 15.60 0.25 -23.36 16 10 N -0.58 -15.89 2.53 -817.12 -2.07 -17.96 16 11 C 0.11 2.58 5.48 87.38 0.48 3.06 16 12 C -0.13 -2.84 6.03 29.55 0.18 -2.66 16 13 C 0.06 1.30 4.96 84.72 0.42 1.72 16 14 N -0.54 -15.69 3.90 -916.53 -3.57 -19.27 16 15 C 0.06 1.95 5.25 85.56 0.45 2.40 16 16 C 0.44 19.65 7.14 87.66 0.63 20.28 16 17 O -0.60 -30.21 14.50 -3.07 -0.04 -30.25 16 18 N -0.58 -28.37 5.29 -306.98 -1.62 -29.99 16 19 C -0.32 -17.76 9.68 84.04 0.81 -16.95 16 20 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 22 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 23 Si 0.99 42.16 29.55 68.60 2.03 44.19 16 24 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 27 C 0.06 1.47 4.62 87.05 0.40 1.87 16 28 C 0.12 2.93 5.57 86.48 0.48 3.41 16 29 C -0.13 -3.00 4.74 31.59 0.15 -2.85 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.06 0.90 8.09 -2.38 -0.02 0.88 16 33 H 0.07 1.57 8.01 -2.38 -0.02 1.55 16 34 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.10 1.65 8.09 -2.38 -0.02 1.63 16 36 H 0.07 1.82 7.19 -2.39 -0.02 1.80 16 37 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.49 7.44 -2.39 -0.02 1.48 16 40 H 0.06 1.03 7.18 -2.39 -0.02 1.02 16 41 H 0.10 2.97 7.75 -2.39 -0.02 2.95 16 42 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 43 H 0.39 18.62 7.90 -92.71 -0.73 17.89 16 44 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 45 H 0.07 2.10 6.25 -2.39 -0.01 2.09 16 46 H 0.07 1.31 7.14 -2.38 -0.02 1.29 16 47 H 0.07 2.24 4.93 -2.39 -0.01 2.23 16 48 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 49 H 0.10 2.06 7.58 -2.39 -0.02 2.04 16 50 H 0.09 1.80 7.58 -2.39 -0.02 1.78 16 Total: -1.00 -73.56 388.45 0.36 -73.20 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: 0.22 Total: 39.40 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 6.30 Total: 27.84 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -6.98 Total: -116.12 kcal Atomic # 8 Polarization: -67.31 SS G_CDS: -1.20 Total: -68.50 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -73.56 0.36 -73.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196574429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.875 kcal (2) G-P(sol) polarization free energy of solvation -73.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds