Wall clock time and date at job start Tue Mar 31 2020 23:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.75196 * 2 1 4 4 C 1.54379 * 110.84944 * 236.53351 * 2 1 3 5 5 O 1.43238 * 107.58710 * 220.45428 * 4 2 1 6 6 C 1.43646 * 109.97247 * 358.28497 * 5 4 2 7 7 H 1.08991 * 110.30737 * 265.51177 * 6 5 4 8 8 C 1.50704 * 110.30781 * 143.44307 * 6 5 4 9 9 O 1.21284 * 120.00111 * 345.24183 * 8 6 5 10 10 N 1.34771 * 119.99722 * 165.24103 * 8 6 5 11 11 C 1.47613 * 118.74747 * 4.42589 * 10 8 6 12 12 C 1.54179 * 111.09517 * 138.19312 * 11 10 8 13 13 C 1.51276 * 109.77578 * 320.24731 * 12 11 10 14 14 N 1.46199 * 109.10431 * 92.30435 * 13 12 11 15 15 C 1.46896 * 110.99921 * 144.76900 * 14 13 12 16 16 C 1.50701 * 109.47105 * 64.98821 * 15 14 13 17 17 O 1.21294 * 119.99978 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00251 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99983 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00123 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99734 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00213 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99631 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46783 * 90.00144 * 23 21 19 25 25 H 1.48505 * 109.46908 * 210.00181 * 23 21 19 26 26 H 1.48498 * 109.46982 * 330.00039 * 23 21 19 27 27 C 1.41438 * 116.34518 * 272.97498 * 14 13 12 28 28 C 1.44886 * 118.74665 * 184.68426 * 10 8 6 29 29 C 1.54946 * 105.13227 * 24.43212 * 6 5 4 30 30 H 1.09004 * 109.47058 * 182.00914 * 1 2 3 31 31 H 1.09000 * 109.46610 * 62.01512 * 1 2 3 32 32 H 1.08993 * 109.47482 * 302.01531 * 1 2 3 33 33 H 1.09010 * 109.83130 * 339.96407 * 4 2 1 34 34 H 1.08998 * 109.83431 * 100.94081 * 4 2 1 35 35 H 1.08997 * 109.11224 * 258.78195 * 11 10 8 36 36 H 1.08997 * 109.11052 * 17.84708 * 11 10 8 37 37 H 1.08996 * 109.45526 * 200.09676 * 12 11 10 38 38 H 1.09006 * 109.26127 * 80.26890 * 12 11 10 39 39 H 1.08995 * 109.53215 * 332.41570 * 13 12 11 40 40 H 1.09001 * 109.52882 * 212.18681 * 13 12 11 41 41 H 1.09001 * 109.47733 * 184.98710 * 15 14 13 42 42 H 1.09005 * 109.47451 * 304.99022 * 15 14 13 43 43 H 0.96998 * 120.00051 * 0.02562 * 18 16 15 44 44 H 0.96995 * 119.99729 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.38662 * 303.32381 * 27 14 13 46 46 H 1.09003 * 109.38811 * 183.64253 * 27 14 13 47 47 H 1.09000 * 109.42971 * 29.80035 * 28 10 8 48 48 H 1.09000 * 109.43552 * 149.66639 * 28 10 8 49 49 H 1.08999 * 111.11767 * 205.63768 * 29 6 5 50 50 H 1.08997 * 111.12622 * 81.47892 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9162 1.0193 0.0000 4 6 2.0795 -0.7956 -1.2035 5 8 3.2045 -1.5538 -0.7439 6 6 3.4464 -1.2796 0.6452 7 1 4.1935 -0.4930 0.7510 8 6 3.9004 -2.5298 1.3538 9 8 3.7594 -3.6119 0.8246 10 7 4.4631 -2.4452 2.5755 11 6 4.5315 -1.1269 3.2359 12 6 4.1858 -1.2382 4.7343 13 6 3.0435 -2.2115 4.9251 14 7 3.5878 -3.5457 5.1719 15 6 2.7496 -4.2887 6.1223 16 6 1.3952 -4.5372 5.5099 17 8 1.1521 -4.1346 4.3918 18 7 0.4542 -5.2069 6.2044 19 6 -0.7777 -5.4334 5.6470 20 1 -0.9942 -5.0749 4.6516 21 6 -1.7478 -6.1244 6.3629 22 7 -1.4845 -6.5602 7.5744 23 14 -3.4265 -6.4324 5.6037 24 1 -3.4073 -7.7212 4.8663 25 1 -4.4517 -6.4911 6.6765 26 1 -3.7550 -5.3297 4.6648 27 6 3.8739 -4.3282 4.0290 28 6 4.9828 -3.6509 3.1882 29 6 2.0827 -0.8053 1.2074 30 1 -0.3633 -1.0271 0.0360 31 1 -0.3632 0.4822 -0.9075 32 1 -0.3634 0.5448 0.8713 33 1 1.3108 -1.4683 -1.5841 34 1 2.3929 -0.1082 -1.9892 35 1 5.5389 -0.7252 3.1273 36 1 3.8248 -0.4501 2.7558 37 1 3.8951 -0.2586 5.1136 38 1 5.0601 -1.5936 5.2797 39 1 2.4267 -2.2300 4.0267 40 1 2.4389 -1.9012 5.7773 41 1 3.2230 -5.2422 6.3562 42 1 2.6335 -3.7067 7.0366 43 1 0.6484 -5.5286 7.0986 44 1 -2.1618 -7.0421 8.0742 45 1 2.9724 -4.4291 3.4246 46 1 4.2101 -5.3167 4.3421 47 1 5.3187 -4.3370 2.4107 48 1 5.8232 -3.3963 3.8340 49 1 2.2185 -0.1639 2.0782 50 1 1.4386 -1.6526 1.4425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196574431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:48 Heat of formation + Delta-G solvation = -99.171625 kcal Electronic energy + Delta-G solvation = -31809.353458 eV Core-core repulsion = 27643.976363 eV Total energy + Delta-G solvation = -4165.377095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78206 -39.46630 -38.45313 -36.98433 -35.03108 -33.80369 -33.70247 -32.52126 -31.32935 -30.86776 -28.82499 -26.70917 -26.44310 -25.68379 -24.29534 -23.49424 -21.80178 -20.93693 -20.51270 -19.22080 -18.79020 -17.94605 -17.71882 -16.75102 -16.26821 -15.85713 -15.60903 -15.30253 -15.22576 -14.91428 -14.70743 -14.40309 -14.04985 -13.84431 -13.67661 -13.55443 -13.37979 -13.18604 -13.10620 -12.78730 -12.46338 -12.07644 -11.85548 -11.77366 -11.57028 -11.49044 -11.35136 -11.26794 -11.17962 -11.10892 -11.00549 -10.87934 -10.71348 -10.51554 -10.41822 -10.25242 -9.96081 -9.51822 -9.30088 -9.04424 -8.53222 -7.99601 -7.42932 -6.44774 -3.85810 2.65337 2.86659 3.14812 3.23959 3.29455 3.81883 3.85604 4.11625 4.14851 4.27108 4.43138 4.52861 4.76247 4.80932 4.86124 4.96632 5.00678 5.01196 5.16751 5.20845 5.21787 5.38718 5.41487 5.45302 5.49982 5.59646 5.63596 5.67431 5.70964 5.75400 5.77326 5.86346 5.90512 5.98101 6.02356 6.08955 6.11390 6.11575 6.26216 6.52155 6.55165 6.75793 6.87916 7.37814 7.41276 7.51738 7.77546 8.02141 8.31124 8.57192 9.14317 9.50679 10.01636 10.71990 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.003675 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.256179 B = 7618.049036 C = 9249.584931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 H 0.087 0.913 4 C 0.053 3.947 5 O -0.356 6.356 6 C 0.067 3.933 7 H 0.090 0.910 8 C 0.511 3.489 9 O -0.515 6.515 10 N -0.602 5.602 11 C 0.103 3.897 12 C -0.131 4.131 13 C 0.073 3.927 14 N -0.535 5.535 15 C 0.049 3.951 16 C 0.405 3.595 17 O -0.592 6.592 18 N -0.559 5.559 19 C -0.300 4.300 20 H 0.101 0.899 21 C 0.024 3.976 22 N -0.900 5.900 23 Si 0.928 3.072 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.044 3.956 28 C 0.124 3.876 29 C -0.142 4.142 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.528 15.271 -6.949 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 H 0.105 0.895 4 C -0.024 4.024 5 O -0.274 6.274 6 C 0.005 3.995 7 H 0.108 0.892 8 C 0.297 3.703 9 O -0.390 6.390 10 N -0.337 5.337 11 C -0.020 4.020 12 C -0.170 4.170 13 C -0.055 4.055 14 N -0.258 5.258 15 C -0.082 4.082 16 C 0.191 3.809 17 O -0.478 6.478 18 N -0.195 5.195 19 C -0.430 4.430 20 H 0.119 0.881 21 C -0.178 4.178 22 N -0.541 5.541 23 Si 0.755 3.245 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.086 4.086 28 C 0.001 3.999 29 C -0.180 4.180 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.110 0.890 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.714 14.777 -7.801 20.407 hybrid contribution -1.685 -0.400 0.178 1.741 sum 10.028 14.378 -7.624 19.116 Atomic orbital electron populations 1.21739 0.93237 1.02946 1.02173 1.22709 0.97568 0.99653 0.94311 0.89482 1.23306 0.88623 0.94281 0.96168 1.88496 1.49096 1.67561 1.22294 1.22831 0.98283 0.94978 0.83359 0.89228 1.20428 0.77774 0.90553 0.81518 1.90720 1.52990 1.29224 1.66026 1.47699 1.59885 1.09034 1.17076 1.22213 1.01403 0.83765 0.94581 1.21977 1.00728 0.99861 0.94388 1.21419 0.94659 0.87506 1.01909 1.58882 1.46908 1.03474 1.16492 1.22063 0.91078 0.99388 0.95718 1.21118 0.87370 0.84574 0.87878 1.90492 1.81195 1.56015 1.20098 1.42018 1.12015 1.48488 1.16948 1.19689 0.88422 1.33199 1.01683 0.88126 1.25259 1.00127 0.96811 0.95586 1.69606 1.35732 1.38108 1.10631 0.85889 0.81146 0.78985 0.78468 1.20347 1.20857 1.19501 1.21789 0.99323 0.95451 0.91999 1.21554 0.96081 0.85898 0.96395 1.23409 0.94904 1.01260 0.98394 0.91811 0.92196 0.91871 0.90846 0.91160 0.91767 0.90378 0.90606 0.90241 0.92187 0.91733 0.89541 0.89488 0.77452 0.91822 0.91353 0.90958 0.89936 0.90302 0.88979 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.14 37.16 0.34 -0.97 16 2 C -0.12 -1.16 3.60 -88.68 -0.32 -1.48 16 3 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 4 C 0.05 0.58 7.40 37.88 0.28 0.86 16 5 O -0.36 -5.30 10.65 -54.09 -0.58 -5.87 16 6 C 0.07 0.86 2.87 -26.85 -0.08 0.78 16 7 H 0.09 0.89 7.37 -51.93 -0.38 0.51 16 8 C 0.51 8.29 6.94 -10.99 -0.08 8.22 16 9 O -0.52 -10.80 16.09 -13.30 -0.21 -11.01 16 10 N -0.60 -8.21 2.17 -172.22 -0.37 -8.58 16 11 C 0.10 1.02 5.76 -2.82 -0.02 1.00 16 12 C -0.13 -1.36 5.79 -26.98 -0.16 -1.51 16 13 C 0.07 1.09 4.21 -5.07 -0.02 1.06 16 14 N -0.53 -8.43 3.99 -240.95 -0.96 -9.39 16 15 C 0.05 0.84 5.58 -4.98 -0.03 0.81 16 16 C 0.41 9.29 7.24 -10.98 -0.08 9.21 16 17 O -0.59 -15.39 12.15 5.55 0.07 -15.33 16 18 N -0.56 -14.01 5.29 -10.96 -0.06 -14.06 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 23 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.04 0.75 4.92 -5.75 -0.03 0.72 16 28 C 0.12 1.75 5.47 -3.98 -0.02 1.73 16 29 C -0.14 -1.65 5.52 -24.48 -0.14 -1.78 16 30 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.83 7.81 -51.92 -0.41 0.43 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.67 4.17 -51.93 -0.22 0.46 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.82 7.98 -51.93 -0.41 0.40 16 39 H 0.06 1.09 6.32 -51.93 -0.33 0.76 16 40 H 0.06 0.99 7.57 -51.93 -0.39 0.60 16 41 H 0.09 1.37 7.92 -51.93 -0.41 0.96 16 42 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 43 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.07 1.51 6.00 -51.93 -0.31 1.20 16 46 H 0.07 1.17 7.85 -51.93 -0.41 0.76 16 47 H 0.08 1.24 7.36 -51.93 -0.38 0.85 16 48 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 49 H 0.09 0.87 6.52 -51.93 -0.34 0.53 16 50 H 0.09 1.41 7.94 -51.93 -0.41 1.00 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -34.28 385.08 -9.22 -43.50 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -8.03 Total: 11.79 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -0.58 Total: 10.69 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.67 Total: -55.74 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.72 Total: -32.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.28 -9.22 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196574431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.676 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds