Wall clock time and date at job start Tue Mar 31 2020 23:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.75196 * 2 1 4 4 C 1.54379 * 110.84944 * 236.53351 * 2 1 3 5 5 O 1.43238 * 107.58710 * 220.45428 * 4 2 1 6 6 C 1.43646 * 109.97247 * 358.28497 * 5 4 2 7 7 H 1.08991 * 110.30737 * 265.51177 * 6 5 4 8 8 C 1.50704 * 110.30781 * 143.44307 * 6 5 4 9 9 O 1.21284 * 120.00111 * 345.24183 * 8 6 5 10 10 N 1.34771 * 119.99722 * 165.24103 * 8 6 5 11 11 C 1.47613 * 118.74747 * 4.42589 * 10 8 6 12 12 C 1.54179 * 111.09517 * 138.19312 * 11 10 8 13 13 C 1.51276 * 109.77578 * 320.24731 * 12 11 10 14 14 N 1.46199 * 109.10431 * 92.30435 * 13 12 11 15 15 C 1.46896 * 110.99921 * 144.76900 * 14 13 12 16 16 C 1.50701 * 109.47105 * 64.98821 * 15 14 13 17 17 O 1.21294 * 119.99978 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00251 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99983 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00123 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99734 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00213 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99631 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46783 * 90.00144 * 23 21 19 25 25 H 1.48505 * 109.46908 * 210.00181 * 23 21 19 26 26 H 1.48498 * 109.46982 * 330.00039 * 23 21 19 27 27 C 1.41438 * 116.34518 * 272.97498 * 14 13 12 28 28 C 1.44886 * 118.74665 * 184.68426 * 10 8 6 29 29 C 1.54946 * 105.13227 * 24.43212 * 6 5 4 30 30 H 1.09004 * 109.47058 * 182.00914 * 1 2 3 31 31 H 1.09000 * 109.46610 * 62.01512 * 1 2 3 32 32 H 1.08993 * 109.47482 * 302.01531 * 1 2 3 33 33 H 1.09010 * 109.83130 * 339.96407 * 4 2 1 34 34 H 1.08998 * 109.83431 * 100.94081 * 4 2 1 35 35 H 1.08997 * 109.11224 * 258.78195 * 11 10 8 36 36 H 1.08997 * 109.11052 * 17.84708 * 11 10 8 37 37 H 1.08996 * 109.45526 * 200.09676 * 12 11 10 38 38 H 1.09006 * 109.26127 * 80.26890 * 12 11 10 39 39 H 1.08995 * 109.53215 * 332.41570 * 13 12 11 40 40 H 1.09001 * 109.52882 * 212.18681 * 13 12 11 41 41 H 1.09001 * 109.47733 * 184.98710 * 15 14 13 42 42 H 1.09005 * 109.47451 * 304.99022 * 15 14 13 43 43 H 0.96998 * 120.00051 * 0.02562 * 18 16 15 44 44 H 0.96995 * 119.99729 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.38662 * 303.32381 * 27 14 13 46 46 H 1.09003 * 109.38811 * 183.64253 * 27 14 13 47 47 H 1.09000 * 109.42971 * 29.80035 * 28 10 8 48 48 H 1.09000 * 109.43552 * 149.66639 * 28 10 8 49 49 H 1.08999 * 111.11767 * 205.63768 * 29 6 5 50 50 H 1.08997 * 111.12622 * 81.47892 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9162 1.0193 0.0000 4 6 2.0795 -0.7956 -1.2035 5 8 3.2045 -1.5538 -0.7439 6 6 3.4464 -1.2796 0.6452 7 1 4.1935 -0.4930 0.7510 8 6 3.9004 -2.5298 1.3538 9 8 3.7594 -3.6119 0.8246 10 7 4.4631 -2.4452 2.5755 11 6 4.5315 -1.1269 3.2359 12 6 4.1858 -1.2382 4.7343 13 6 3.0435 -2.2115 4.9251 14 7 3.5878 -3.5457 5.1719 15 6 2.7496 -4.2887 6.1223 16 6 1.3952 -4.5372 5.5099 17 8 1.1521 -4.1346 4.3918 18 7 0.4542 -5.2069 6.2044 19 6 -0.7777 -5.4334 5.6470 20 1 -0.9942 -5.0749 4.6516 21 6 -1.7478 -6.1244 6.3629 22 7 -1.4845 -6.5602 7.5744 23 14 -3.4265 -6.4324 5.6037 24 1 -3.4073 -7.7212 4.8663 25 1 -4.4517 -6.4911 6.6765 26 1 -3.7550 -5.3297 4.6648 27 6 3.8739 -4.3282 4.0290 28 6 4.9828 -3.6509 3.1882 29 6 2.0827 -0.8053 1.2074 30 1 -0.3633 -1.0271 0.0360 31 1 -0.3632 0.4822 -0.9075 32 1 -0.3634 0.5448 0.8713 33 1 1.3108 -1.4683 -1.5841 34 1 2.3929 -0.1082 -1.9892 35 1 5.5389 -0.7252 3.1273 36 1 3.8248 -0.4501 2.7558 37 1 3.8951 -0.2586 5.1136 38 1 5.0601 -1.5936 5.2797 39 1 2.4267 -2.2300 4.0267 40 1 2.4389 -1.9012 5.7773 41 1 3.2230 -5.2422 6.3562 42 1 2.6335 -3.7067 7.0366 43 1 0.6484 -5.5286 7.0986 44 1 -2.1618 -7.0421 8.0742 45 1 2.9724 -4.4291 3.4246 46 1 4.2101 -5.3167 4.3421 47 1 5.3187 -4.3370 2.4107 48 1 5.8232 -3.3963 3.8340 49 1 2.2185 -0.1639 2.0782 50 1 1.4386 -1.6526 1.4425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196574431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:47 Heat of formation + Delta-G solvation = -124.411966 kcal Electronic energy + Delta-G solvation = -31810.447962 eV Core-core repulsion = 27643.976363 eV Total energy + Delta-G solvation = -4166.471599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91815 -40.83793 -39.80977 -38.45821 -36.44713 -35.68501 -34.62505 -33.60042 -33.34847 -31.96882 -30.13703 -28.00996 -27.33161 -27.05645 -25.89566 -24.66423 -22.92279 -21.94913 -21.67345 -20.93600 -19.97395 -19.81145 -18.83466 -18.05509 -17.57739 -17.22645 -16.78280 -16.62566 -16.43458 -16.32532 -16.19307 -15.72530 -15.53650 -15.47820 -14.93463 -14.75041 -14.46932 -14.31668 -14.13273 -13.98255 -13.62911 -13.41287 -13.32636 -13.11353 -12.99492 -12.87065 -12.71004 -12.49262 -12.38670 -12.24980 -12.21797 -12.16869 -12.02312 -11.87312 -11.72603 -11.61137 -11.48677 -11.00305 -10.84997 -10.43238 -10.04536 -9.66194 -9.02050 -8.50294 -6.00229 1.30814 1.34904 1.46015 1.47006 1.82303 2.00273 2.24412 2.87476 2.97195 3.15366 3.21669 3.24827 3.47929 3.70374 3.82602 3.91265 3.97306 4.02916 4.15857 4.20033 4.23235 4.32479 4.37637 4.46371 4.48272 4.56555 4.57690 4.64691 4.67140 4.70426 4.74736 4.78961 4.84427 4.90850 4.93245 4.97707 5.11116 5.12624 5.22920 5.31281 5.34921 5.40997 5.65469 5.84961 5.89746 6.07274 6.26391 6.44557 6.55593 7.08277 7.12802 7.51991 8.08329 8.65044 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.003675 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.256179 B = 7618.049036 C = 9249.584931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 H 0.127 0.873 4 C 0.044 3.956 5 O -0.392 6.392 6 C 0.070 3.930 7 H 0.134 0.866 8 C 0.497 3.503 9 O -0.582 6.582 10 N -0.598 5.598 11 C 0.095 3.905 12 C -0.119 4.119 13 C 0.070 3.930 14 N -0.514 5.514 15 C 0.056 3.944 16 C 0.404 3.596 17 O -0.626 6.626 18 N -0.571 5.571 19 C -0.333 4.333 20 H 0.070 0.930 21 C -0.009 4.009 22 N -0.917 5.917 23 Si 0.987 3.013 24 H -0.274 1.274 25 H -0.265 1.265 26 H -0.276 1.276 27 C 0.050 3.950 28 C 0.130 3.870 29 C -0.139 4.139 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.020 0.980 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.008 0.992 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.116 0.884 49 H 0.120 0.880 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.159 18.441 -5.869 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 H 0.145 0.855 4 C -0.032 4.032 5 O -0.311 6.311 6 C 0.009 3.991 7 H 0.151 0.849 8 C 0.285 3.715 9 O -0.462 6.462 10 N -0.331 5.331 11 C -0.026 4.026 12 C -0.157 4.157 13 C -0.058 4.058 14 N -0.236 5.236 15 C -0.075 4.075 16 C 0.191 3.809 17 O -0.514 6.514 18 N -0.208 5.208 19 C -0.463 4.463 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.557 5.557 23 Si 0.811 3.189 24 H -0.200 1.200 25 H -0.189 1.189 26 H -0.201 1.201 27 C -0.081 4.081 28 C 0.007 3.993 29 C -0.177 4.177 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.110 0.890 39 H 0.039 0.961 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.133 0.867 43 H 0.230 0.770 44 H 0.088 0.912 45 H 0.026 0.974 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.134 0.866 49 H 0.138 0.862 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.370 17.991 -6.673 23.387 hybrid contribution -2.182 -1.392 -0.162 2.593 sum 11.188 16.599 -6.835 21.152 Atomic orbital electron populations 1.21749 0.93396 1.01394 1.03596 1.22748 0.97378 1.00818 0.91979 0.85522 1.23527 0.87621 0.94386 0.97618 1.88457 1.50308 1.69025 1.23301 1.23029 0.99633 0.94011 0.82397 0.84860 1.21269 0.76995 0.90987 0.82245 1.90677 1.55811 1.31769 1.67894 1.47875 1.58380 1.10388 1.16417 1.22595 1.04206 0.81828 0.93958 1.21931 0.98914 0.99926 0.94962 1.21526 0.96370 0.88031 0.99853 1.59125 1.45491 1.03499 1.15493 1.22192 0.87555 1.01223 0.96563 1.22314 0.88879 0.82474 0.87211 1.90507 1.82263 1.56745 1.21841 1.42085 1.11828 1.49611 1.17296 1.19552 0.90481 1.35124 1.01152 0.91203 1.25960 1.02985 0.95992 0.95967 1.69655 1.36878 1.38051 1.11159 0.85023 0.77380 0.78505 0.77997 1.19952 1.18943 1.20120 1.21682 0.97918 0.96638 0.91844 1.21463 0.95781 0.86112 0.95965 1.23367 0.93603 1.00181 1.00550 0.94850 0.90070 0.91148 0.92609 0.88150 0.87798 0.88959 0.87307 0.89004 0.96103 0.92239 0.87655 0.86659 0.76967 0.91203 0.97403 0.90629 0.91523 0.86567 0.86196 0.94023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.14 71.98 0.66 -1.89 16 2 C -0.11 -1.90 3.60 -9.53 -0.03 -1.93 16 3 H 0.13 1.26 8.14 -2.39 -0.02 1.25 16 4 C 0.04 0.96 7.40 72.45 0.54 1.49 16 5 O -0.39 -11.80 10.65 -130.95 -1.39 -13.20 16 6 C 0.07 1.75 2.87 30.51 0.09 1.84 16 7 H 0.13 2.17 7.37 -2.39 -0.02 2.15 16 8 C 0.50 16.66 6.94 87.66 0.61 17.27 16 9 O -0.58 -26.46 16.09 14.99 0.24 -26.22 16 10 N -0.60 -15.81 2.17 -817.16 -1.78 -17.58 16 11 C 0.09 1.51 5.76 86.57 0.50 2.01 16 12 C -0.12 -2.00 5.79 30.43 0.18 -1.82 16 13 C 0.07 2.01 4.21 85.87 0.36 2.37 16 14 N -0.51 -15.80 3.99 -916.22 -3.66 -19.45 16 15 C 0.06 1.90 5.58 85.56 0.48 2.38 16 16 C 0.40 19.27 7.24 87.66 0.63 19.90 16 17 O -0.63 -34.83 12.15 -3.07 -0.04 -34.87 16 18 N -0.57 -29.70 5.29 -306.98 -1.62 -31.33 16 19 C -0.33 -19.41 9.68 84.04 0.81 -18.59 16 20 H 0.07 4.42 7.16 -2.91 -0.02 4.40 16 21 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 22 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 23 Si 0.99 44.16 29.55 68.60 2.03 46.19 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 C 0.05 1.73 4.92 87.90 0.43 2.16 16 28 C 0.13 3.63 5.47 87.28 0.48 4.11 16 29 C -0.14 -3.20 5.52 32.05 0.18 -3.02 16 30 H 0.03 0.77 8.12 -2.39 -0.02 0.76 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.35 7.81 -2.38 -0.02 1.33 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 1.22 4.17 -2.39 -0.01 1.21 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.40 7.98 -2.38 -0.02 1.39 16 39 H 0.02 0.77 6.32 -2.39 -0.02 0.76 16 40 H 0.06 1.76 7.57 -2.39 -0.02 1.74 16 41 H 0.11 3.22 7.92 -2.39 -0.02 3.21 16 42 H 0.12 3.33 7.93 -2.38 -0.02 3.31 16 43 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 44 H 0.28 14.20 8.31 -92.71 -0.77 13.42 16 45 H 0.01 0.37 6.00 -2.39 -0.01 0.36 16 46 H 0.08 2.52 7.85 -2.39 -0.02 2.50 16 47 H 0.07 2.08 7.36 -2.39 -0.02 2.06 16 48 H 0.12 2.39 8.11 -2.39 -0.02 2.37 16 49 H 0.12 1.99 6.52 -2.39 -0.02 1.97 16 50 H 0.04 1.38 7.94 -2.39 -0.02 1.37 16 Total: -1.00 -83.88 385.08 0.66 -83.22 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.22 Total: 36.70 kcal Atomic # 6 Polarization: 19.89 SS G_CDS: 6.37 Total: 26.26 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -6.77 Total: -118.09 kcal Atomic # 8 Polarization: -73.09 SS G_CDS: -1.19 Total: -74.28 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -83.88 0.66 -83.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196574431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.189 kcal (2) G-P(sol) polarization free energy of solvation -83.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds