Wall clock time and date at job start Tue Mar 31 2020 23:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.54077 * 2 1 4 4 C 1.54804 * 110.48932 * 237.37917 * 2 1 3 5 5 C 1.55004 * 102.09198 * 220.44885 * 4 2 1 6 6 O 1.44375 * 103.49020 * 37.02171 * 5 4 2 7 7 C 1.43744 * 106.97702 * 319.94320 * 6 5 4 8 8 H 1.09006 * 109.87343 * 266.94202 * 7 6 5 9 9 C 1.50696 * 109.87833 * 145.93905 * 7 6 5 10 10 O 1.21279 * 120.00173 * 351.23574 * 9 7 6 11 11 N 1.34781 * 119.99889 * 171.23544 * 9 7 6 12 12 C 1.47607 * 118.74845 * 175.92970 * 11 9 7 13 13 C 1.53802 * 111.30153 * 138.29650 * 12 11 9 14 14 C 1.51270 * 109.62919 * 319.96090 * 13 12 11 15 15 N 1.46192 * 109.10128 * 92.40997 * 14 13 12 16 16 C 1.46901 * 111.00237 * 144.76731 * 15 14 13 17 17 C 1.50693 * 109.47612 * 197.08063 * 16 15 14 18 18 O 1.21293 * 119.99943 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00558 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00571 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99906 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00248 * 179.72963 * 20 19 17 23 23 N 1.31415 * 120.00234 * 180.27161 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 0.27311 * 22 20 19 25 25 H 1.48494 * 109.47465 * 89.99991 * 24 22 20 26 26 H 1.48500 * 109.47348 * 210.00519 * 24 22 20 27 27 H 1.48501 * 109.47041 * 330.00090 * 24 22 20 28 28 C 1.41440 * 116.34760 * 272.97347 * 15 14 13 29 29 C 1.44890 * 118.74649 * 355.91031 * 11 9 7 30 30 H 1.09002 * 109.46976 * 304.93746 * 1 2 3 31 31 H 1.09002 * 109.46862 * 64.93303 * 1 2 3 32 32 H 1.08992 * 109.47324 * 184.92939 * 1 2 3 33 33 H 1.08990 * 110.91045 * 102.24970 * 4 2 1 34 34 H 1.09000 * 110.90825 * 338.64240 * 4 2 1 35 35 H 1.09004 * 110.61474 * 278.51801 * 5 4 2 36 36 H 1.09001 * 110.75291 * 155.59016 * 5 4 2 37 37 H 1.08998 * 109.11650 * 258.76867 * 12 11 9 38 38 H 1.09000 * 109.11388 * 17.83044 * 12 11 9 39 39 H 1.09000 * 109.44336 * 80.01293 * 13 12 11 40 40 H 1.09005 * 109.44174 * 199.90653 * 13 12 11 41 41 H 1.08999 * 109.53335 * 332.51747 * 14 13 12 42 42 H 1.09008 * 109.52934 * 212.29723 * 14 13 12 43 43 H 1.08999 * 109.46878 * 77.07877 * 16 15 14 44 44 H 1.09004 * 109.46797 * 317.08335 * 16 15 14 45 45 H 0.97000 * 119.99582 * 0.02562 * 19 17 16 46 46 H 0.96999 * 119.99875 * 179.97438 * 23 22 20 47 47 H 1.08996 * 109.39186 * 183.63928 * 28 15 14 48 48 H 1.09000 * 109.38247 * 303.42854 * 28 15 14 49 49 H 1.08999 * 109.43007 * 149.68085 * 29 11 9 50 50 H 1.09001 * 109.39890 * 29.79044 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0719 -0.7817 -1.2214 5 6 3.2659 -1.5562 -0.6074 6 8 2.7954 -1.9109 0.7106 7 6 2.0692 -0.7780 1.2160 8 1 2.7344 -0.1422 1.8004 9 6 0.9226 -1.2459 2.0746 10 8 0.6382 -2.4241 2.1171 11 7 0.2130 -0.3550 2.7953 12 6 -0.9601 -0.8298 3.5550 13 6 -1.0232 -0.1816 4.9483 14 6 0.3692 -0.0991 5.5339 15 7 0.9546 1.1969 5.1952 16 6 1.8033 1.6927 6.2870 17 6 2.0455 3.1688 6.1044 18 8 1.5586 3.7508 5.1582 19 7 2.8023 3.8426 6.9931 20 6 3.0221 5.1856 6.8274 21 1 2.5893 5.7037 5.9844 22 6 3.7977 5.8813 7.7466 23 7 4.0041 7.1698 7.5906 24 14 4.5471 4.9852 9.2043 25 1 5.8905 4.4727 8.8330 26 1 4.6739 5.9221 10.3495 27 1 3.6727 3.8484 9.5893 28 6 1.6277 1.2766 3.9538 29 6 0.6312 1.0323 2.7951 30 1 -0.3633 0.5885 0.8425 31 1 -0.3633 0.4354 -0.9309 32 1 -0.3633 -1.0238 0.0883 33 1 2.4104 -0.0994 -2.0009 34 1 1.3197 -1.4694 -1.6079 35 1 4.1456 -0.9159 -0.5416 36 1 3.4866 -2.4508 -1.1899 37 1 -1.8669 -0.5805 3.0040 38 1 -0.8983 -1.9122 3.6674 39 1 -1.4411 0.8215 4.8632 40 1 -1.6561 -0.7837 5.6003 41 1 0.9862 -0.8970 5.1206 42 1 0.3154 -0.2028 6.6177 43 1 2.7564 1.1640 6.2750 44 1 1.3048 1.5215 7.2411 45 1 3.1914 3.3773 7.7501 46 1 4.5452 7.6555 8.2326 47 1 2.0723 2.2659 3.8460 48 1 2.4129 0.5213 3.9189 49 1 -0.2405 1.6737 2.9251 50 1 1.1143 1.2647 1.8461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197203317.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:26 Heat of formation + Delta-G solvation = -80.798606 kcal Electronic energy + Delta-G solvation = -31593.443272 eV Core-core repulsion = 27428.862891 eV Total energy + Delta-G solvation = -4164.580382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26968 -39.46334 -38.52717 -37.35049 -35.26543 -34.13892 -33.75098 -32.81142 -31.71437 -30.22513 -29.25051 -27.50384 -26.60434 -25.74396 -23.98405 -23.45396 -22.25177 -21.15437 -20.49702 -19.46507 -18.93741 -18.32436 -17.45334 -16.92536 -16.78429 -16.18257 -15.74134 -15.49080 -15.20713 -14.95035 -14.86159 -14.72111 -14.36183 -14.06397 -13.85100 -13.69513 -13.28204 -13.12747 -12.84691 -12.80043 -12.76563 -12.46659 -12.21255 -11.91854 -11.78274 -11.75475 -11.57915 -11.44486 -11.35998 -11.25848 -11.08684 -11.01472 -10.91016 -10.79608 -10.61934 -10.22732 -10.01047 -9.57335 -9.51930 -8.75180 -8.55612 -8.21183 -7.86486 -6.34691 -3.86091 2.46256 2.73229 3.00202 3.04416 3.13071 3.69232 3.70369 3.85962 4.06444 4.07377 4.24099 4.40697 4.62991 4.69936 4.81987 4.86937 4.93075 4.99171 5.05191 5.10255 5.11133 5.18166 5.27352 5.29009 5.31011 5.41256 5.42728 5.52611 5.56243 5.57226 5.61889 5.63894 5.73120 5.76011 5.78011 5.86373 5.92359 5.93989 6.03118 6.14306 6.23347 6.43548 6.55812 7.19008 7.28512 7.55206 7.60337 8.08851 8.10847 8.56454 8.91497 9.39053 9.79189 10.78311 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.002866 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.357133 B = 9767.892673 C =10534.096259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 H 0.097 0.903 4 C -0.149 4.149 5 C 0.043 3.957 6 O -0.350 6.350 7 C 0.060 3.940 8 H 0.094 0.906 9 C 0.520 3.480 10 O -0.530 6.530 11 N -0.604 5.604 12 C 0.114 3.886 13 C -0.130 4.130 14 C 0.073 3.927 15 N -0.539 5.539 16 C 0.050 3.950 17 C 0.451 3.549 18 O -0.560 6.560 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.055 3.945 29 C 0.104 3.896 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.114 0.886 48 H 0.013 0.987 49 H 0.095 0.905 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 -16.477 -11.816 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.135 4.135 3 H 0.115 0.885 4 C -0.187 4.187 5 C -0.033 4.033 6 O -0.267 6.267 7 C -0.002 4.002 8 H 0.111 0.889 9 C 0.307 3.693 10 O -0.406 6.406 11 N -0.338 5.338 12 C -0.007 4.007 13 C -0.169 4.169 14 C -0.055 4.055 15 N -0.263 5.263 16 C -0.080 4.080 17 C 0.237 3.763 18 O -0.443 6.443 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.705 3.295 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.075 4.075 29 C -0.019 4.019 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.132 0.868 48 H 0.031 0.969 49 H 0.113 0.887 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.194 -16.430 -12.299 21.438 hybrid contribution 1.395 -0.710 1.344 2.064 sum -4.799 -17.140 -10.955 20.901 Atomic orbital electron populations 1.22200 0.93433 1.02930 1.03236 1.22505 0.97704 1.00127 0.93188 0.88470 1.23231 0.98416 0.99439 0.97565 1.23630 0.96147 1.00033 0.83503 1.88987 1.70692 1.35853 1.31213 1.22825 0.93048 0.88662 0.95626 0.88876 1.20354 0.83009 0.86050 0.79874 1.90676 1.68576 1.16778 1.64596 1.47887 1.29441 1.08800 1.47721 1.21835 0.86667 1.00253 0.91986 1.21880 0.97532 1.02545 0.94960 1.21536 0.95151 0.89008 0.99794 1.57718 1.39891 1.26660 1.02027 1.21873 0.96126 0.95194 0.94848 1.19708 0.83345 0.87995 0.85286 1.90509 1.52418 1.69408 1.31941 1.42238 1.46402 1.09944 1.24380 1.19415 1.29933 0.81973 1.12005 0.86237 1.25035 0.97517 0.95514 0.98040 1.69619 1.38734 1.06929 1.36807 0.86686 0.80072 0.79778 0.82936 1.19659 1.20183 1.19484 1.21942 0.93972 1.03081 0.88516 1.21968 1.00154 0.81268 0.98532 0.90687 0.91768 0.92065 0.89662 0.90133 0.91726 0.88594 0.91887 0.89564 0.89679 0.90424 0.94327 0.91067 0.93444 0.89259 0.79727 0.91598 0.86789 0.96869 0.88703 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 7.77 37.16 0.29 -1.16 16 2 C -0.12 -1.03 2.55 -89.09 -0.23 -1.26 16 3 H 0.10 0.73 7.64 -51.93 -0.40 0.33 16 4 C -0.15 -1.15 6.71 -24.72 -0.17 -1.31 16 5 C 0.04 0.39 7.72 38.22 0.29 0.68 16 6 O -0.35 -4.67 10.75 -54.66 -0.59 -5.25 16 7 C 0.06 0.70 2.94 -27.31 -0.08 0.62 16 8 H 0.09 1.05 6.88 -51.93 -0.36 0.69 16 9 C 0.52 7.09 4.98 -10.99 -0.05 7.03 16 10 O -0.53 -9.13 15.83 -13.87 -0.22 -9.35 16 11 N -0.60 -7.10 1.34 -172.45 -0.23 -7.33 16 12 C 0.11 1.23 6.17 -3.02 -0.02 1.22 16 13 C -0.13 -1.36 5.78 -27.19 -0.16 -1.51 16 14 C 0.07 0.88 5.32 -5.08 -0.03 0.85 16 15 N -0.54 -7.90 3.60 -240.95 -0.87 -8.77 16 16 C 0.05 0.80 5.44 -4.98 -0.03 0.77 16 17 C 0.45 9.60 7.37 -10.99 -0.08 9.52 16 18 O -0.56 -13.77 13.97 5.55 0.08 -13.69 16 19 N -0.59 -13.48 5.09 -10.97 -0.06 -13.54 16 20 C -0.30 -8.32 10.16 -14.94 -0.15 -8.47 16 21 H 0.12 3.72 7.39 -52.49 -0.39 3.34 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.21 13.96 55.50 0.77 -24.43 16 24 Si 0.88 18.97 27.74 -169.99 -4.72 14.25 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.30 6.51 56.52 0.37 -4.93 16 28 C 0.05 0.78 4.84 -5.75 -0.03 0.75 16 29 C 0.10 1.22 3.64 -3.97 -0.01 1.20 16 30 H 0.07 0.69 4.84 -51.93 -0.25 0.44 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.67 7.21 -51.93 -0.37 0.29 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.03 6.95 -51.93 -0.36 0.67 16 39 H 0.08 0.98 7.98 -51.93 -0.41 0.57 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.51 7.32 -51.93 -0.38 0.13 16 42 H 0.07 0.78 7.37 -51.92 -0.38 0.40 16 43 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 44 H 0.09 1.25 7.57 -51.93 -0.39 0.86 16 45 H 0.37 7.48 5.76 -40.82 -0.24 7.25 16 46 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.11 1.96 5.62 -51.93 -0.29 1.67 16 48 H 0.01 0.19 7.59 -51.93 -0.39 -0.20 16 49 H 0.09 1.15 8.11 -51.93 -0.42 0.73 16 50 H 0.09 0.86 4.30 -51.93 -0.22 0.63 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -33.78 375.55 -8.51 -42.29 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -7.80 Total: 10.20 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -0.55 Total: 9.97 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.38 Total: -54.07 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.73 Total: -28.30 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.72 Total: 14.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.78 -8.51 -42.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197203317.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.510 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds