Wall clock time and date at job start Tue Mar 31 2020 23:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.54077 * 2 1 4 4 C 1.54804 * 110.48932 * 237.37917 * 2 1 3 5 5 C 1.55004 * 102.09198 * 220.44885 * 4 2 1 6 6 O 1.44375 * 103.49020 * 37.02171 * 5 4 2 7 7 C 1.43744 * 106.97702 * 319.94320 * 6 5 4 8 8 H 1.09006 * 109.87343 * 266.94202 * 7 6 5 9 9 C 1.50696 * 109.87833 * 145.93905 * 7 6 5 10 10 O 1.21279 * 120.00173 * 351.23574 * 9 7 6 11 11 N 1.34781 * 119.99889 * 171.23544 * 9 7 6 12 12 C 1.47607 * 118.74845 * 175.92970 * 11 9 7 13 13 C 1.53802 * 111.30153 * 138.29650 * 12 11 9 14 14 C 1.51270 * 109.62919 * 319.96090 * 13 12 11 15 15 N 1.46192 * 109.10128 * 92.40997 * 14 13 12 16 16 C 1.46901 * 111.00237 * 144.76731 * 15 14 13 17 17 C 1.50693 * 109.47612 * 197.08063 * 16 15 14 18 18 O 1.21293 * 119.99943 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00558 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00571 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99906 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00248 * 179.72963 * 20 19 17 23 23 N 1.31415 * 120.00234 * 180.27161 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 0.27311 * 22 20 19 25 25 H 1.48494 * 109.47465 * 89.99991 * 24 22 20 26 26 H 1.48500 * 109.47348 * 210.00519 * 24 22 20 27 27 H 1.48501 * 109.47041 * 330.00090 * 24 22 20 28 28 C 1.41440 * 116.34760 * 272.97347 * 15 14 13 29 29 C 1.44890 * 118.74649 * 355.91031 * 11 9 7 30 30 H 1.09002 * 109.46976 * 304.93746 * 1 2 3 31 31 H 1.09002 * 109.46862 * 64.93303 * 1 2 3 32 32 H 1.08992 * 109.47324 * 184.92939 * 1 2 3 33 33 H 1.08990 * 110.91045 * 102.24970 * 4 2 1 34 34 H 1.09000 * 110.90825 * 338.64240 * 4 2 1 35 35 H 1.09004 * 110.61474 * 278.51801 * 5 4 2 36 36 H 1.09001 * 110.75291 * 155.59016 * 5 4 2 37 37 H 1.08998 * 109.11650 * 258.76867 * 12 11 9 38 38 H 1.09000 * 109.11388 * 17.83044 * 12 11 9 39 39 H 1.09000 * 109.44336 * 80.01293 * 13 12 11 40 40 H 1.09005 * 109.44174 * 199.90653 * 13 12 11 41 41 H 1.08999 * 109.53335 * 332.51747 * 14 13 12 42 42 H 1.09008 * 109.52934 * 212.29723 * 14 13 12 43 43 H 1.08999 * 109.46878 * 77.07877 * 16 15 14 44 44 H 1.09004 * 109.46797 * 317.08335 * 16 15 14 45 45 H 0.97000 * 119.99582 * 0.02562 * 19 17 16 46 46 H 0.96999 * 119.99875 * 179.97438 * 23 22 20 47 47 H 1.08996 * 109.39186 * 183.63928 * 28 15 14 48 48 H 1.09000 * 109.38247 * 303.42854 * 28 15 14 49 49 H 1.08999 * 109.43007 * 149.68085 * 29 11 9 50 50 H 1.09001 * 109.39890 * 29.79044 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0719 -0.7817 -1.2214 5 6 3.2659 -1.5562 -0.6074 6 8 2.7954 -1.9109 0.7106 7 6 2.0692 -0.7780 1.2160 8 1 2.7344 -0.1422 1.8004 9 6 0.9226 -1.2459 2.0746 10 8 0.6382 -2.4241 2.1171 11 7 0.2130 -0.3550 2.7953 12 6 -0.9601 -0.8298 3.5550 13 6 -1.0232 -0.1816 4.9483 14 6 0.3692 -0.0991 5.5339 15 7 0.9546 1.1969 5.1952 16 6 1.8033 1.6927 6.2870 17 6 2.0455 3.1688 6.1044 18 8 1.5586 3.7508 5.1582 19 7 2.8023 3.8426 6.9931 20 6 3.0221 5.1856 6.8274 21 1 2.5893 5.7037 5.9844 22 6 3.7977 5.8813 7.7466 23 7 4.0041 7.1698 7.5906 24 14 4.5471 4.9852 9.2043 25 1 5.8905 4.4727 8.8330 26 1 4.6739 5.9221 10.3495 27 1 3.6727 3.8484 9.5893 28 6 1.6277 1.2766 3.9538 29 6 0.6312 1.0323 2.7951 30 1 -0.3633 0.5885 0.8425 31 1 -0.3633 0.4354 -0.9309 32 1 -0.3633 -1.0238 0.0883 33 1 2.4104 -0.0994 -2.0009 34 1 1.3197 -1.4694 -1.6079 35 1 4.1456 -0.9159 -0.5416 36 1 3.4866 -2.4508 -1.1899 37 1 -1.8669 -0.5805 3.0040 38 1 -0.8983 -1.9122 3.6674 39 1 -1.4411 0.8215 4.8632 40 1 -1.6561 -0.7837 5.6003 41 1 0.9862 -0.8970 5.1206 42 1 0.3154 -0.2028 6.6177 43 1 2.7564 1.1640 6.2750 44 1 1.3048 1.5215 7.2411 45 1 3.1914 3.3773 7.7501 46 1 4.5452 7.6555 8.2326 47 1 2.0723 2.2659 3.8460 48 1 2.4129 0.5213 3.9189 49 1 -0.2405 1.6737 2.9251 50 1 1.1143 1.2647 1.8461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197203317.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:25 Heat of formation + Delta-G solvation = -104.667194 kcal Electronic energy + Delta-G solvation = -31594.478292 eV Core-core repulsion = 27428.862891 eV Total energy + Delta-G solvation = -4165.615401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.22892 -40.71587 -39.75766 -38.63986 -36.43833 -35.83020 -34.78685 -33.74992 -33.67870 -31.00138 -30.50004 -28.46729 -27.75687 -26.92637 -25.59003 -24.29081 -23.14755 -22.07399 -21.42394 -21.23869 -20.28899 -19.81047 -18.38118 -17.98342 -17.72362 -17.61044 -16.85616 -16.77007 -16.50423 -16.11635 -15.99079 -15.86271 -15.48791 -15.23747 -15.07930 -14.74843 -14.61214 -14.38586 -14.16325 -14.07842 -13.65613 -13.61520 -13.46278 -13.10951 -12.98458 -12.80428 -12.68585 -12.44997 -12.35989 -12.34255 -12.17917 -12.01026 -11.97160 -11.87024 -11.75341 -11.72161 -11.42636 -11.09695 -10.52000 -10.32886 -10.19438 -9.69949 -9.08280 -8.38181 -5.97721 1.31912 1.36425 1.43616 1.45084 1.79189 2.00099 2.24653 2.61302 2.89713 3.18779 3.23433 3.28700 3.39890 3.66757 3.85858 3.92472 3.95573 4.09632 4.13046 4.14621 4.24240 4.26452 4.27949 4.36025 4.43488 4.47669 4.50401 4.56951 4.59742 4.67047 4.74322 4.78795 4.84881 4.88415 4.89876 4.98181 5.01841 5.07452 5.09993 5.22045 5.31349 5.50911 5.56829 5.74573 5.95376 6.10669 6.27624 6.49282 6.63601 6.92754 7.06142 7.44697 8.00836 8.79222 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.002866 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.357133 B = 9767.892673 C =10534.096259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 H 0.116 0.884 4 C -0.142 4.142 5 C 0.035 3.965 6 O -0.385 6.385 7 C 0.055 3.945 8 H 0.096 0.904 9 C 0.518 3.482 10 O -0.572 6.572 11 N -0.595 5.595 12 C 0.111 3.889 13 C -0.122 4.122 14 C 0.075 3.925 15 N -0.550 5.550 16 C 0.060 3.940 17 C 0.454 3.546 18 O -0.597 6.597 19 N -0.595 5.595 20 C -0.321 4.321 21 H 0.060 0.940 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.960 3.040 25 H -0.260 1.260 26 H -0.278 1.278 27 H -0.232 1.232 28 C 0.059 3.941 29 C 0.114 3.886 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.028 0.972 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.387 0.613 46 H 0.278 0.722 47 H 0.082 0.918 48 H 0.014 0.986 49 H 0.093 0.907 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 -18.379 -10.947 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 H 0.134 0.866 4 C -0.179 4.179 5 C -0.041 4.041 6 O -0.304 6.304 7 C -0.006 4.006 8 H 0.113 0.887 9 C 0.307 3.693 10 O -0.451 6.451 11 N -0.329 5.329 12 C -0.010 4.010 13 C -0.160 4.160 14 C -0.052 4.052 15 N -0.275 5.275 16 C -0.071 4.071 17 C 0.241 3.759 18 O -0.481 6.481 19 N -0.237 5.237 20 C -0.451 4.451 21 H 0.078 0.922 22 C -0.213 4.213 23 N -0.576 5.576 24 Si 0.780 3.220 25 H -0.185 1.185 26 H -0.203 1.203 27 H -0.155 1.155 28 C -0.071 4.071 29 C -0.009 4.009 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.047 0.953 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.138 0.862 45 H 0.222 0.778 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.032 0.968 49 H 0.111 0.889 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.191 -18.347 -11.440 22.490 hybrid contribution 1.317 -0.102 0.937 1.619 sum -4.875 -18.449 -10.503 21.782 Atomic orbital electron populations 1.22141 0.93549 1.01510 1.04056 1.22591 0.97540 1.00830 0.92449 0.86562 1.23229 0.97686 0.99492 0.97533 1.23897 0.97039 1.01108 0.82019 1.88948 1.71122 1.36988 1.33326 1.22936 0.92432 0.88639 0.96566 0.88687 1.20742 0.83250 0.85564 0.79744 1.90648 1.69923 1.18461 1.66111 1.47888 1.29309 1.08513 1.47142 1.21945 0.86804 0.99650 0.92587 1.21839 0.96905 1.02436 0.94860 1.21618 0.95418 0.87033 1.01138 1.57761 1.39748 1.28293 1.01721 1.21832 0.97989 0.90650 0.96615 1.20831 0.81129 0.90220 0.83674 1.90501 1.53246 1.71050 1.33302 1.42079 1.47544 1.08340 1.25697 1.18997 1.30852 0.84163 1.11063 0.92179 1.26031 0.97485 0.96248 1.01523 1.69797 1.40004 1.09262 1.38568 0.85433 0.79722 0.79281 0.77533 1.18466 1.20309 1.15526 1.21805 0.94639 1.01175 0.89531 1.21879 0.99594 0.81044 0.98384 0.91092 0.89911 0.94286 0.86963 0.90683 0.90289 0.87581 0.90459 0.90649 0.90514 0.87839 0.95337 0.89060 0.91260 0.86245 0.77751 0.91294 0.89943 0.96819 0.88893 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 7.77 71.98 0.56 -2.04 16 2 C -0.12 -1.87 2.55 -9.81 -0.03 -1.90 16 3 H 0.12 1.46 7.64 -2.39 -0.02 1.44 16 4 C -0.14 -1.92 6.71 31.90 0.21 -1.70 16 5 C 0.04 0.58 7.72 72.67 0.56 1.14 16 6 O -0.39 -10.20 10.75 -130.40 -1.40 -11.60 16 7 C 0.06 1.27 2.94 30.22 0.09 1.36 16 8 H 0.10 2.09 6.88 -2.38 -0.02 2.07 16 9 C 0.52 14.03 4.98 87.66 0.44 14.47 16 10 O -0.57 -20.00 15.83 15.55 0.25 -19.75 16 11 N -0.60 -13.53 1.34 -817.90 -1.09 -14.63 16 12 C 0.11 2.27 6.17 86.44 0.53 2.80 16 13 C -0.12 -2.25 5.78 30.30 0.18 -2.07 16 14 C 0.07 1.61 5.32 85.87 0.46 2.07 16 15 N -0.55 -15.16 3.60 -916.24 -3.30 -18.46 16 16 C 0.06 1.74 5.44 85.55 0.47 2.20 16 17 C 0.45 19.11 7.37 87.65 0.65 19.76 16 18 O -0.60 -30.10 13.97 -3.07 -0.04 -30.15 16 19 N -0.59 -26.79 5.09 -307.00 -1.56 -28.35 16 20 C -0.32 -18.13 10.16 84.04 0.85 -17.27 16 21 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 22 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 23 N -0.94 -55.33 13.96 21.66 0.30 -55.02 16 24 Si 0.96 38.08 27.74 68.60 1.90 39.99 16 25 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 26 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.23 -7.73 6.51 99.48 0.65 -7.08 16 28 C 0.06 1.64 4.84 87.90 0.43 2.06 16 29 C 0.11 2.58 3.64 87.28 0.32 2.89 16 30 H 0.07 1.22 4.84 -2.39 -0.01 1.21 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 0.83 7.21 -2.39 -0.02 0.82 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 1.10 7.87 -2.39 -0.02 1.09 16 35 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.75 6.95 -2.39 -0.02 1.73 16 39 H 0.08 1.60 7.98 -2.39 -0.02 1.58 16 40 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.03 0.69 7.32 -2.39 -0.02 0.67 16 42 H 0.09 1.63 7.37 -2.38 -0.02 1.62 16 43 H 0.07 1.78 8.11 -2.39 -0.02 1.76 16 44 H 0.12 2.82 7.57 -2.38 -0.02 2.81 16 45 H 0.39 14.60 5.76 -92.71 -0.53 14.07 16 46 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 47 H 0.08 2.88 5.62 -2.39 -0.01 2.86 16 48 H 0.01 0.38 7.59 -2.39 -0.02 0.37 16 49 H 0.09 2.18 8.11 -2.39 -0.02 2.16 16 50 H 0.10 1.94 4.30 -2.39 -0.01 1.93 16 Total: -1.00 -79.04 375.55 1.59 -77.45 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: 0.37 Total: 37.07 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 6.17 Total: 23.45 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -5.66 Total: -116.46 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -1.20 Total: -61.49 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 1.90 Total: 39.99 kcal Total: -79.04 1.59 -77.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197203317.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.217 kcal (2) G-P(sol) polarization free energy of solvation -79.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds