Wall clock time and date at job start Tue Mar 31 2020 23:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.82530 * 2 1 4 4 O 1.43237 * 109.83533 * 120.88916 * 2 1 3 5 5 C 1.43639 * 109.97171 * 117.80017 * 4 2 1 6 6 C 1.54947 * 105.14072 * 24.43357 * 5 4 2 7 7 C 1.54387 * 109.82894 * 239.11659 * 2 1 3 8 8 H 1.08993 * 110.85078 * 337.31805 * 7 2 1 9 9 C 1.50700 * 110.84670 * 100.93974 * 7 2 1 10 10 O 1.21283 * 120.00551 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99777 * 179.97438 * 9 7 2 12 12 C 1.44672 * 118.54890 * 0.02562 * 11 9 7 13 13 C 1.54953 * 109.51808 * 269.07975 * 12 11 9 14 14 C 1.47541 * 109.73453 * 290.51969 * 13 12 11 15 15 N 1.46255 * 114.37803 * 62.21905 * 14 13 12 16 16 C 1.46903 * 111.00385 * 148.55374 * 15 14 13 17 17 C 1.50694 * 109.46954 * 189.99935 * 16 15 14 18 18 O 1.21292 * 120.00719 * 0.02562 * 17 16 15 19 19 N 1.34786 * 119.99619 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99770 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00327 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99843 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00215 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99912 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46744 * 90.00290 * 24 22 20 26 26 H 1.48506 * 109.46948 * 210.00122 * 24 22 20 27 27 H 1.48494 * 109.47249 * 330.00492 * 24 22 20 28 28 C 1.44768 * 110.64401 * 272.25393 * 15 14 13 29 29 C 1.47783 * 118.54589 * 179.73376 * 11 9 7 30 30 H 1.09002 * 109.47153 * 300.69774 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.69965 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.69946 * 1 2 3 33 33 H 1.09003 * 110.30988 * 143.34775 * 5 4 2 34 34 H 1.09000 * 110.31195 * 265.41711 * 5 4 2 35 35 H 1.08997 * 111.12484 * 81.47035 * 6 5 4 36 36 H 1.09001 * 111.12592 * 205.64070 * 6 5 4 37 37 H 1.09000 * 109.46663 * 29.09378 * 12 11 9 38 38 H 1.09002 * 109.46698 * 149.07632 * 12 11 9 39 39 H 1.08998 * 109.42737 * 50.60224 * 13 12 11 40 40 H 1.08998 * 109.42632 * 170.49060 * 13 12 11 41 41 H 1.09001 * 108.49733 * 183.48405 * 14 13 12 42 42 H 1.08997 * 108.50408 * 300.94495 * 14 13 12 43 43 H 1.09002 * 109.46579 * 310.00066 * 16 15 14 44 44 H 1.08997 * 109.46620 * 70.00320 * 16 15 14 45 45 H 0.96997 * 120.00033 * 0.02562 * 19 17 16 46 46 H 0.97000 * 120.00186 * 179.97438 * 23 22 20 47 47 H 1.08991 * 109.43802 * 214.22022 * 28 15 14 48 48 H 1.08996 * 109.43284 * 334.14241 * 28 15 14 49 49 H 1.09003 * 109.05969 * 258.64722 * 29 11 9 50 50 H 1.09001 * 109.06612 * 17.57756 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 8 2.0160 -0.6917 1.1563 5 6 2.7748 -1.8438 0.7559 6 6 3.2731 -1.5226 -0.6757 7 6 2.0537 -0.7455 -1.2464 8 1 1.3012 -1.4335 -1.6316 9 6 2.4870 0.2288 -2.3113 10 8 2.3948 1.4221 -2.1154 11 7 2.9771 -0.2260 -3.4816 12 6 3.0729 -1.6555 -3.6822 13 6 4.4645 -2.1518 -3.2152 14 6 5.5050 -1.6569 -4.1367 15 7 5.6193 -0.1999 -4.1917 16 6 7.0037 0.2099 -4.4626 17 6 7.1337 1.6988 -4.2702 18 8 6.1682 2.3542 -3.9394 19 7 8.3229 2.3023 -4.4657 20 6 8.4413 3.6568 -4.2901 21 1 7.5816 4.2404 -3.9956 22 6 9.6672 4.2790 -4.4922 23 7 9.7806 5.5774 -4.3244 24 14 11.1540 3.2697 -5.0023 25 1 11.2233 3.2048 -6.4843 26 1 12.3884 3.9062 -4.4765 27 1 11.0323 1.8959 -4.4519 28 6 4.7137 0.3462 -5.1805 29 6 3.3869 0.7576 -4.5056 30 1 -0.3633 0.5246 0.8837 31 1 -0.3633 -1.0276 0.0125 32 1 -0.3634 0.5029 -0.8962 33 1 3.6210 -1.9913 1.4269 34 1 2.1406 -2.7302 0.7474 35 1 4.1621 -0.8925 -0.6500 36 1 3.4572 -2.4358 -1.2416 37 1 2.2960 -2.1563 -3.1044 38 1 2.9424 -1.8834 -4.7401 39 1 4.6636 -1.7798 -2.2102 40 1 4.4769 -3.2417 -3.2073 41 1 6.4657 -2.0678 -3.8263 42 1 5.2831 -2.0246 -5.1385 43 1 7.6759 -0.3053 -3.7764 44 1 7.2646 -0.0480 -5.4891 45 1 9.0950 1.7782 -4.7306 46 1 10.6365 6.0117 -4.4651 47 1 5.1696 1.2195 -5.6468 48 1 4.5108 -0.4072 -5.9416 49 1 2.6055 0.8303 -5.2621 50 1 3.5146 1.7314 -4.0329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197554508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:37 Heat of formation + Delta-G solvation = -81.229802 kcal Electronic energy + Delta-G solvation = -31695.747039 eV Core-core repulsion = 27531.147960 eV Total energy + Delta-G solvation = -4164.599080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93831 -39.37592 -38.44705 -37.42911 -35.19591 -33.89130 -33.24509 -32.18824 -31.65976 -31.49294 -29.47634 -27.11594 -26.46125 -25.67476 -23.98284 -22.89540 -22.59692 -20.98540 -20.51338 -19.36636 -18.75785 -18.24768 -17.78025 -16.86965 -16.17964 -16.04542 -15.83579 -15.43709 -14.92966 -14.89817 -14.73703 -14.43800 -14.26634 -13.95378 -13.83245 -13.57062 -13.36790 -13.16037 -12.77824 -12.70202 -12.52412 -12.45943 -12.15070 -12.06998 -12.03769 -11.73672 -11.59761 -11.49963 -11.24951 -11.13585 -11.04979 -10.90766 -10.84167 -10.59706 -10.55611 -9.95804 -9.71088 -9.53594 -9.47773 -8.55469 -8.50286 -8.15634 -8.02974 -6.28909 -3.80235 2.70089 3.02305 3.04024 3.06108 3.14946 3.63589 3.74734 3.81911 4.11070 4.22421 4.44049 4.55587 4.59796 4.72897 4.76030 4.86156 4.92748 5.01132 5.07523 5.14169 5.21154 5.23459 5.26668 5.37023 5.39585 5.39764 5.44933 5.49491 5.54995 5.62238 5.63809 5.73867 5.75409 5.80886 5.84027 5.92088 5.97494 6.00871 6.08805 6.13267 6.43034 6.66759 6.89775 7.15347 7.32215 7.48463 7.60247 8.16907 8.31963 8.62148 8.97867 9.44467 9.85493 10.84345 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.002991 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.520755 B = 9359.501856 C = 9852.369058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.087 3.913 3 H 0.103 0.897 4 O -0.378 6.378 5 C 0.051 3.949 6 C -0.151 4.151 7 C -0.139 4.139 8 H 0.106 0.894 9 C 0.522 3.478 10 O -0.527 6.527 11 N -0.589 5.589 12 C 0.111 3.889 13 C -0.154 4.154 14 C 0.059 3.941 15 N -0.510 5.510 16 C 0.046 3.954 17 C 0.449 3.551 18 O -0.551 6.551 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.056 3.944 29 C 0.125 3.875 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.032 0.968 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.369 0.631 46 H 0.273 0.727 47 H 0.091 0.909 48 H 0.032 0.968 49 H 0.056 0.944 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.961 -22.918 1.206 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.030 3.970 3 H 0.121 0.879 4 O -0.297 6.297 5 C -0.025 4.025 6 C -0.189 4.189 7 C -0.160 4.160 8 H 0.124 0.876 9 C 0.309 3.691 10 O -0.403 6.403 11 N -0.321 5.321 12 C -0.013 4.013 13 C -0.193 4.193 14 C -0.069 4.069 15 N -0.233 5.233 16 C -0.086 4.086 17 C 0.234 3.766 18 O -0.432 6.432 19 N -0.233 5.233 20 C -0.431 4.431 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.073 4.073 29 C 0.003 3.997 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.201 0.799 46 H 0.083 0.917 47 H 0.109 0.891 48 H 0.050 0.950 49 H 0.075 0.925 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.702 -21.368 2.155 25.475 hybrid contribution 1.797 -1.248 -1.543 2.678 sum -11.904 -22.616 0.612 25.565 Atomic orbital electron populations 1.22106 0.94707 1.01993 1.02740 1.22688 0.94269 0.97574 0.82513 0.87942 1.88445 1.70900 1.40343 1.30044 1.23381 0.95129 0.89020 0.95004 1.23718 0.97879 1.01122 0.96167 1.22898 0.99308 0.97909 0.95910 0.87598 1.20095 0.77620 0.89046 0.82380 1.90730 1.54332 1.16525 1.78711 1.47472 1.62477 1.06159 1.16003 1.21587 0.96966 0.81145 1.01634 1.21914 0.95222 0.99961 1.02211 1.20969 0.99473 0.87972 0.98463 1.60328 1.04773 1.08362 1.49867 1.21983 0.90034 0.96489 1.00055 1.19655 0.84183 0.88282 0.84462 1.90602 1.37458 1.65406 1.49732 1.42216 1.09179 1.08882 1.62995 1.19427 0.98750 0.80958 1.43997 0.86257 1.25033 0.97659 0.95654 0.97845 1.69623 1.25808 1.08297 1.48468 0.86682 0.83353 0.80011 0.79363 1.19739 1.20217 1.19568 1.22340 0.93255 0.99911 0.91776 1.22014 0.93887 0.93975 0.89792 0.91666 0.92581 0.91388 0.89540 0.92239 0.89068 0.88368 0.90623 0.90845 0.89140 0.90404 0.91692 0.94978 0.89336 0.93394 0.79862 0.91654 0.89121 0.94979 0.92550 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.44 37.16 0.35 -1.26 16 2 C 0.09 1.09 3.61 -26.01 -0.09 0.99 16 3 H 0.10 1.60 6.78 -51.93 -0.35 1.24 16 4 O -0.38 -4.80 11.02 -35.23 -0.39 -5.18 16 5 C 0.05 0.47 7.78 38.19 0.30 0.76 16 6 C -0.15 -1.39 4.29 -24.40 -0.10 -1.50 16 7 C -0.14 -1.49 1.90 -89.74 -0.17 -1.66 16 8 H 0.11 0.86 6.87 -51.93 -0.36 0.50 16 9 C 0.52 7.61 7.01 -10.98 -0.08 7.53 16 10 O -0.53 -10.25 14.69 5.55 0.08 -10.17 16 11 N -0.59 -7.54 2.53 -171.95 -0.43 -7.97 16 12 C 0.11 0.94 4.98 -3.99 -0.02 0.92 16 13 C -0.15 -1.27 4.61 -28.33 -0.13 -1.40 16 14 C 0.06 0.61 4.96 -6.81 -0.03 0.58 16 15 N -0.51 -7.50 3.90 -240.78 -0.94 -8.44 16 16 C 0.05 0.73 5.25 -4.98 -0.03 0.70 16 17 C 0.45 9.99 7.14 -10.98 -0.08 9.91 16 18 O -0.55 -14.55 14.51 5.55 0.08 -14.47 16 19 N -0.59 -14.00 5.09 -10.96 -0.06 -14.06 16 20 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 21 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -26.01 13.96 55.50 0.77 -25.24 16 24 Si 0.88 19.39 27.74 -169.99 -4.71 14.68 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 28 C 0.06 0.82 4.63 -4.21 -0.02 0.80 16 29 C 0.13 1.88 6.49 -2.58 -0.02 1.87 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 1.08 7.35 -51.93 -0.38 0.70 16 36 H 0.10 0.63 5.39 -51.93 -0.28 0.35 16 37 H 0.08 0.48 5.78 -51.93 -0.30 0.18 16 38 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.09 0.87 4.48 -51.93 -0.23 0.64 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.62 7.44 -51.93 -0.39 0.23 16 42 H 0.03 0.30 7.18 -51.93 -0.37 -0.08 16 43 H 0.09 1.25 7.75 -51.93 -0.40 0.85 16 44 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 45 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.09 1.58 6.25 -51.93 -0.32 1.25 16 48 H 0.03 0.38 7.14 -51.93 -0.37 0.01 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.11 2.10 6.96 -51.93 -0.36 1.74 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -35.72 375.96 -8.02 -43.74 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -7.71 Total: 10.89 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -0.37 Total: 10.55 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.66 Total: -55.70 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.23 Total: -29.82 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.72 -8.02 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197554508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.494 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds