Wall clock time and date at job start Tue Mar 31 2020 23:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.82530 * 2 1 4 4 O 1.43237 * 109.83533 * 120.88916 * 2 1 3 5 5 C 1.43639 * 109.97171 * 117.80017 * 4 2 1 6 6 C 1.54947 * 105.14072 * 24.43357 * 5 4 2 7 7 C 1.54387 * 109.82894 * 239.11659 * 2 1 3 8 8 H 1.08993 * 110.85078 * 337.31805 * 7 2 1 9 9 C 1.50700 * 110.84670 * 100.93974 * 7 2 1 10 10 O 1.21283 * 120.00551 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99777 * 179.97438 * 9 7 2 12 12 C 1.44672 * 118.54890 * 0.02562 * 11 9 7 13 13 C 1.54953 * 109.51808 * 269.07975 * 12 11 9 14 14 C 1.47541 * 109.73453 * 290.51969 * 13 12 11 15 15 N 1.46255 * 114.37803 * 62.21905 * 14 13 12 16 16 C 1.46903 * 111.00385 * 148.55374 * 15 14 13 17 17 C 1.50694 * 109.46954 * 189.99935 * 16 15 14 18 18 O 1.21292 * 120.00719 * 0.02562 * 17 16 15 19 19 N 1.34786 * 119.99619 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99770 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00327 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99843 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00215 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99912 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46744 * 90.00290 * 24 22 20 26 26 H 1.48506 * 109.46948 * 210.00122 * 24 22 20 27 27 H 1.48494 * 109.47249 * 330.00492 * 24 22 20 28 28 C 1.44768 * 110.64401 * 272.25393 * 15 14 13 29 29 C 1.47783 * 118.54589 * 179.73376 * 11 9 7 30 30 H 1.09002 * 109.47153 * 300.69774 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.69965 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.69946 * 1 2 3 33 33 H 1.09003 * 110.30988 * 143.34775 * 5 4 2 34 34 H 1.09000 * 110.31195 * 265.41711 * 5 4 2 35 35 H 1.08997 * 111.12484 * 81.47035 * 6 5 4 36 36 H 1.09001 * 111.12592 * 205.64070 * 6 5 4 37 37 H 1.09000 * 109.46663 * 29.09378 * 12 11 9 38 38 H 1.09002 * 109.46698 * 149.07632 * 12 11 9 39 39 H 1.08998 * 109.42737 * 50.60224 * 13 12 11 40 40 H 1.08998 * 109.42632 * 170.49060 * 13 12 11 41 41 H 1.09001 * 108.49733 * 183.48405 * 14 13 12 42 42 H 1.08997 * 108.50408 * 300.94495 * 14 13 12 43 43 H 1.09002 * 109.46579 * 310.00066 * 16 15 14 44 44 H 1.08997 * 109.46620 * 70.00320 * 16 15 14 45 45 H 0.96997 * 120.00033 * 0.02562 * 19 17 16 46 46 H 0.97000 * 120.00186 * 179.97438 * 23 22 20 47 47 H 1.08991 * 109.43802 * 214.22022 * 28 15 14 48 48 H 1.08996 * 109.43284 * 334.14241 * 28 15 14 49 49 H 1.09003 * 109.05969 * 258.64722 * 29 11 9 50 50 H 1.09001 * 109.06612 * 17.57756 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 8 2.0160 -0.6917 1.1563 5 6 2.7748 -1.8438 0.7559 6 6 3.2731 -1.5226 -0.6757 7 6 2.0537 -0.7455 -1.2464 8 1 1.3012 -1.4335 -1.6316 9 6 2.4870 0.2288 -2.3113 10 8 2.3948 1.4221 -2.1154 11 7 2.9771 -0.2260 -3.4816 12 6 3.0729 -1.6555 -3.6822 13 6 4.4645 -2.1518 -3.2152 14 6 5.5050 -1.6569 -4.1367 15 7 5.6193 -0.1999 -4.1917 16 6 7.0037 0.2099 -4.4626 17 6 7.1337 1.6988 -4.2702 18 8 6.1682 2.3542 -3.9394 19 7 8.3229 2.3023 -4.4657 20 6 8.4413 3.6568 -4.2901 21 1 7.5816 4.2404 -3.9956 22 6 9.6672 4.2790 -4.4922 23 7 9.7806 5.5774 -4.3244 24 14 11.1540 3.2697 -5.0023 25 1 11.2233 3.2048 -6.4843 26 1 12.3884 3.9062 -4.4765 27 1 11.0323 1.8959 -4.4519 28 6 4.7137 0.3462 -5.1805 29 6 3.3869 0.7576 -4.5056 30 1 -0.3633 0.5246 0.8837 31 1 -0.3633 -1.0276 0.0125 32 1 -0.3634 0.5029 -0.8962 33 1 3.6210 -1.9913 1.4269 34 1 2.1406 -2.7302 0.7474 35 1 4.1621 -0.8925 -0.6500 36 1 3.4572 -2.4358 -1.2416 37 1 2.2960 -2.1563 -3.1044 38 1 2.9424 -1.8834 -4.7401 39 1 4.6636 -1.7798 -2.2102 40 1 4.4769 -3.2417 -3.2073 41 1 6.4657 -2.0678 -3.8263 42 1 5.2831 -2.0246 -5.1385 43 1 7.6759 -0.3053 -3.7764 44 1 7.2646 -0.0480 -5.4891 45 1 9.0950 1.7782 -4.7306 46 1 10.6365 6.0117 -4.4651 47 1 5.1696 1.2195 -5.6468 48 1 4.5108 -0.4072 -5.9416 49 1 2.6055 0.8303 -5.2621 50 1 3.5146 1.7314 -4.0329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197554508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:36 Heat of formation + Delta-G solvation = -111.108819 kcal Electronic energy + Delta-G solvation = -31697.042691 eV Core-core repulsion = 27531.147960 eV Total energy + Delta-G solvation = -4165.894731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.92204 -40.67018 -39.71886 -38.72925 -36.41547 -35.81412 -34.18242 -33.74964 -33.10162 -32.30451 -30.71124 -28.35731 -27.33815 -26.84197 -25.61212 -23.90240 -23.38496 -21.95769 -21.53778 -21.16830 -20.25354 -19.63920 -18.73761 -17.84863 -17.68081 -17.05392 -16.92318 -16.79622 -16.40036 -16.15880 -15.76592 -15.68368 -15.48960 -15.10760 -14.92164 -14.69839 -14.42955 -14.38998 -14.22955 -13.94872 -13.76086 -13.62653 -13.55252 -13.08096 -12.94677 -12.87049 -12.68335 -12.57376 -12.42883 -12.42681 -12.07084 -11.99675 -11.96296 -11.84593 -11.68779 -11.48157 -11.30804 -10.76172 -10.45265 -10.36617 -10.23689 -9.53668 -9.13513 -8.41909 -6.02890 1.27605 1.34177 1.43088 1.61699 1.98528 2.04432 2.22029 2.64334 2.80697 3.14343 3.20437 3.39723 3.60020 3.71670 3.94200 3.97169 4.01508 4.06241 4.15471 4.20660 4.21990 4.29118 4.38515 4.38908 4.43725 4.57688 4.60529 4.64048 4.67884 4.71643 4.79988 4.80464 4.85201 4.87747 5.04142 5.05475 5.07601 5.13512 5.18199 5.22717 5.46379 5.52358 5.68176 5.91923 6.06305 6.09409 6.36747 6.49838 6.60233 6.89416 7.26060 7.40584 8.00445 8.76478 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.002991 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.520755 B = 9359.501856 C = 9852.369058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 H 0.052 0.948 4 O -0.402 6.402 5 C 0.045 3.955 6 C -0.140 4.140 7 C -0.126 4.126 8 H 0.148 0.852 9 C 0.509 3.491 10 O -0.596 6.596 11 N -0.582 5.582 12 C 0.099 3.901 13 C -0.153 4.153 14 C 0.053 3.947 15 N -0.539 5.539 16 C 0.060 3.940 17 C 0.446 3.554 18 O -0.603 6.603 19 N -0.594 5.594 20 C -0.326 4.326 21 H 0.048 0.952 22 C -0.019 4.019 23 N -0.939 5.939 24 Si 0.969 3.031 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.230 1.230 28 C 0.066 3.934 29 C 0.128 3.872 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.117 0.883 44 H 0.083 0.917 45 H 0.389 0.611 46 H 0.278 0.722 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.070 -30.009 -0.117 32.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.024 3.976 3 H 0.070 0.930 4 O -0.323 6.323 5 C -0.031 4.031 6 C -0.178 4.178 7 C -0.147 4.147 8 H 0.166 0.834 9 C 0.298 3.702 10 O -0.477 6.477 11 N -0.312 5.312 12 C -0.023 4.023 13 C -0.192 4.192 14 C -0.073 4.073 15 N -0.263 5.263 16 C -0.070 4.070 17 C 0.233 3.767 18 O -0.486 6.486 19 N -0.237 5.237 20 C -0.456 4.456 21 H 0.066 0.934 22 C -0.217 4.217 23 N -0.580 5.580 24 Si 0.789 3.211 25 H -0.180 1.180 26 H -0.202 1.202 27 H -0.153 1.153 28 C -0.063 4.063 29 C 0.004 3.996 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.157 0.843 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.144 0.856 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.135 0.865 44 H 0.101 0.899 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.815 -28.550 0.818 31.305 hybrid contribution 1.400 1.037 -1.082 2.051 sum -11.415 -27.513 -0.264 29.788 Atomic orbital electron populations 1.22039 0.92882 1.03602 1.02299 1.22560 0.95702 0.95600 0.83704 0.93041 1.88415 1.71526 1.41839 1.30487 1.23680 0.95744 0.88851 0.94804 1.23710 0.95547 1.01680 0.96826 1.22891 1.00917 0.97212 0.93665 0.83446 1.20915 0.76963 0.88864 0.83467 1.90710 1.57220 1.19720 1.80059 1.47583 1.61004 1.07951 1.14669 1.22062 0.98549 0.77936 1.03782 1.21987 0.93946 1.02614 1.00611 1.21166 1.01229 0.84497 1.00423 1.60271 1.03854 1.11831 1.50377 1.21878 0.91775 0.90596 1.02790 1.21113 0.82695 0.91343 0.81522 1.90607 1.39227 1.67656 1.51159 1.42032 1.10661 1.07072 1.63933 1.18951 0.97388 0.83246 1.45971 0.93378 1.26175 1.01580 0.97059 0.96873 1.69826 1.27317 1.11089 1.49754 0.85309 0.76610 0.79493 0.79689 1.17967 1.20156 1.15298 1.22181 0.92373 0.99395 0.92394 1.21778 0.95441 0.92124 0.90246 0.92265 0.89732 0.91799 0.88983 0.88733 0.92600 0.84259 0.87407 0.88768 0.90841 0.85617 0.90142 0.92611 0.86472 0.89945 0.77553 0.91212 0.93233 0.90917 0.90677 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.44 71.98 0.68 -2.35 16 2 C 0.08 2.12 3.61 31.06 0.11 2.23 16 3 H 0.05 1.83 6.78 -2.39 -0.02 1.82 16 4 O -0.40 -10.11 11.02 -148.98 -1.64 -11.75 16 5 C 0.04 0.70 7.78 72.65 0.57 1.26 16 6 C -0.14 -2.23 4.29 32.11 0.14 -2.09 16 7 C -0.13 -2.52 1.90 -10.22 -0.02 -2.54 16 8 H 0.15 1.71 6.87 -2.39 -0.02 1.70 16 9 C 0.51 15.41 7.01 87.66 0.61 16.03 16 10 O -0.60 -25.96 14.69 -3.04 -0.04 -26.00 16 11 N -0.58 -14.41 2.53 -816.32 -2.06 -16.47 16 12 C 0.10 1.20 4.98 87.39 0.44 1.63 16 13 C -0.15 -1.65 4.61 29.56 0.14 -1.52 16 14 C 0.05 0.82 4.96 84.72 0.42 1.24 16 15 N -0.54 -14.78 3.90 -915.69 -3.57 -18.36 16 16 C 0.06 1.78 5.25 85.55 0.45 2.23 16 17 C 0.45 20.46 7.14 87.65 0.63 21.08 16 18 O -0.60 -34.69 14.51 -3.07 -0.04 -34.74 16 19 N -0.59 -28.59 5.09 -306.98 -1.56 -30.15 16 20 C -0.33 -19.76 10.16 84.04 0.85 -18.90 16 21 H 0.05 3.51 7.39 -2.91 -0.02 3.49 16 22 C -0.02 -1.08 5.50 84.93 0.47 -0.61 16 23 N -0.94 -58.46 13.96 21.66 0.30 -58.16 16 24 Si 0.97 39.48 27.74 68.60 1.90 41.38 16 25 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 26 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.23 -7.79 6.52 99.48 0.65 -7.15 16 28 C 0.07 1.87 4.63 87.19 0.40 2.28 16 29 C 0.13 4.02 6.49 86.62 0.56 4.58 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 1.31 7.35 -2.39 -0.02 1.29 16 36 H 0.14 1.02 5.39 -2.39 -0.01 1.00 16 37 H 0.11 0.66 5.78 -2.39 -0.01 0.64 16 38 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 39 H 0.07 1.11 4.48 -2.39 -0.01 1.10 16 40 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.08 1.03 7.44 -2.39 -0.02 1.01 16 42 H 0.06 0.64 7.18 -2.39 -0.02 0.62 16 43 H 0.12 2.83 7.75 -2.39 -0.02 2.81 16 44 H 0.08 1.92 8.11 -2.39 -0.02 1.90 16 45 H 0.39 15.31 5.76 -92.71 -0.53 14.77 16 46 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 47 H 0.05 1.80 6.25 -2.39 -0.01 1.79 16 48 H 0.07 1.45 7.14 -2.39 -0.02 1.44 16 49 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.04 1.79 6.96 -2.39 -0.02 1.78 16 Total: -1.00 -95.38 375.96 0.09 -95.28 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.37 Total: 34.41 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 6.44 Total: 24.55 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -6.90 Total: -123.14 kcal Atomic # 8 Polarization: -70.75 SS G_CDS: -1.73 Total: -72.48 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.38 kcal Total: -95.38 0.09 -95.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197554508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.826 kcal (2) G-P(sol) polarization free energy of solvation -95.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds