Wall clock time and date at job start Tue Mar 31 2020 23:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.86987 * 2 1 4 4 O 1.43743 * 109.87768 * 238.83475 * 2 1 3 5 5 C 1.44370 * 106.97865 * 267.08774 * 4 2 1 6 6 C 1.55228 * 103.56995 * 320.01473 * 5 4 2 7 7 C 1.54097 * 109.87779 * 121.00804 * 2 1 3 8 8 H 1.08999 * 110.49106 * 358.58010 * 7 2 1 9 9 C 1.50704 * 110.48684 * 236.07468 * 7 2 1 10 10 O 1.21280 * 119.99953 * 335.17973 * 9 7 2 11 11 N 1.34771 * 120.00181 * 155.18759 * 9 7 2 12 12 C 1.47608 * 118.75067 * 355.34425 * 11 9 7 13 13 C 1.53803 * 111.30763 * 138.29499 * 12 11 9 14 14 C 1.51275 * 109.62768 * 319.96374 * 13 12 11 15 15 N 1.46196 * 109.10475 * 92.40458 * 14 13 12 16 16 C 1.46896 * 111.00342 * 144.76590 * 15 14 13 17 17 C 1.50694 * 109.47684 * 197.08228 * 16 15 14 18 18 O 1.21293 * 119.99805 * 0.02562 * 17 16 15 19 19 N 1.34769 * 120.00253 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00196 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99658 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00097 * 179.72683 * 20 19 17 23 23 N 1.31414 * 119.99916 * 0.27647 * 22 20 19 24 24 Si 1.86800 * 120.00106 * 180.27673 * 22 20 19 25 25 H 1.48501 * 109.47050 * 89.99959 * 24 22 20 26 26 H 1.48501 * 109.47208 * 210.00162 * 24 22 20 27 27 H 1.48502 * 109.46917 * 330.00065 * 24 22 20 28 28 C 1.41448 * 116.34779 * 272.97811 * 15 14 13 29 29 C 1.44888 * 118.74922 * 175.32194 * 11 9 7 30 30 H 1.09002 * 109.47279 * 298.98915 * 1 2 3 31 31 H 1.08999 * 109.47407 * 58.99526 * 1 2 3 32 32 H 1.09011 * 109.46821 * 178.99487 * 1 2 3 33 33 H 1.09004 * 110.61988 * 78.44448 * 5 4 2 34 34 H 1.09004 * 110.62339 * 201.28578 * 5 4 2 35 35 H 1.09001 * 110.88719 * 278.75023 * 6 5 4 36 36 H 1.08997 * 111.02381 * 155.07184 * 6 5 4 37 37 H 1.08997 * 109.11715 * 258.76659 * 12 11 9 38 38 H 1.09002 * 109.11201 * 17.88776 * 12 11 9 39 39 H 1.09003 * 109.44285 * 80.00550 * 13 12 11 40 40 H 1.08999 * 109.44691 * 199.94559 * 13 12 11 41 41 H 1.09004 * 109.53049 * 332.51826 * 14 13 12 42 42 H 1.08992 * 109.53272 * 212.29540 * 14 13 12 43 43 H 1.09006 * 109.46864 * 77.08022 * 16 15 14 44 44 H 1.08998 * 109.47100 * 317.09053 * 16 15 14 45 45 H 0.97000 * 120.00395 * 0.02562 * 19 17 16 46 46 H 0.97006 * 119.99969 * 179.97438 * 23 22 20 47 47 H 1.08995 * 109.38476 * 183.63693 * 28 15 14 48 48 H 1.09003 * 109.37950 * 303.42165 * 28 15 14 49 49 H 1.08995 * 109.43574 * 149.67636 * 29 11 9 50 50 H 1.09000 * 109.39388 * 29.79046 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1567 5 6 2.2281 -2.0724 -0.7619 6 6 2.8317 -1.9535 0.6633 7 6 2.0540 -0.7465 1.2421 8 1 1.2238 -1.0885 1.8601 9 6 2.9743 0.1399 2.0411 10 8 3.5601 1.0523 1.4977 11 7 3.1464 -0.0813 3.3593 12 6 2.3424 -1.1319 4.0138 13 6 3.1914 -1.9532 4.9988 14 6 4.5601 -2.2023 4.4048 15 7 5.4702 -1.1438 4.8392 16 6 6.8261 -1.6684 5.0492 17 6 7.6203 -0.6912 5.8769 18 8 7.1072 0.3407 6.2551 19 7 8.9008 -0.9638 6.1969 20 6 9.6236 -0.0745 6.9494 21 1 9.1667 0.8443 7.2862 22 6 10.9420 -0.3582 7.2841 23 7 11.4978 -1.4764 6.8747 24 14 11.9244 0.8499 8.3160 25 1 11.7506 0.5274 9.7551 26 1 13.3621 0.7528 7.9571 27 1 11.4415 2.2299 8.0561 28 6 5.4967 0.0264 4.0450 29 6 4.1141 0.7209 4.0800 30 1 -0.3634 0.4981 0.8989 31 1 -0.3634 0.5293 -0.8808 32 1 -0.3633 -1.0276 -0.0180 33 1 1.2814 -2.6118 -0.7321 34 1 2.9274 -2.5640 -1.4382 35 1 3.8999 -1.7416 0.6164 36 1 2.6404 -2.8549 1.2454 37 1 1.5188 -0.6661 4.5549 38 1 1.9372 -1.7979 3.2520 39 1 3.2964 -1.4028 5.9338 40 1 2.7012 -2.9073 5.1925 41 1 4.4912 -2.1999 3.3170 42 1 4.9349 -3.1675 4.7451 43 1 7.3146 -1.8091 4.0850 44 1 6.7692 -2.6241 5.5704 45 1 9.3113 -1.7889 5.8941 46 1 12.4184 -1.6743 7.1080 47 1 6.2542 0.7085 4.4309 48 1 5.7402 -0.2401 3.0164 49 1 3.7916 0.8352 5.1149 50 1 4.1896 1.7030 3.6131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197554510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:40 Heat of formation + Delta-G solvation = -96.808634 kcal Electronic energy + Delta-G solvation = -31060.941631 eV Core-core repulsion = 26895.667002 eV Total energy + Delta-G solvation = -4165.274628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08077 -39.51281 -38.49282 -37.29677 -35.18175 -33.84274 -33.02636 -32.41169 -31.58855 -31.25526 -29.36160 -27.31712 -26.67316 -25.63171 -24.13382 -22.96242 -22.23958 -21.27777 -20.59372 -19.32822 -18.83412 -18.00810 -17.74484 -16.79708 -16.33837 -16.14646 -15.89869 -15.57177 -15.10161 -15.01039 -14.72436 -14.50747 -14.21819 -13.92507 -13.76840 -13.69993 -13.50995 -13.24226 -13.11678 -12.81997 -12.46120 -12.32041 -12.26715 -11.88576 -11.78282 -11.52653 -11.51925 -11.48154 -11.31162 -11.24148 -11.12009 -10.97350 -10.86119 -10.83664 -10.39331 -10.21716 -9.96834 -9.78393 -9.46988 -8.73295 -8.42119 -7.96848 -7.73526 -6.41821 -3.82537 2.42437 2.85726 3.17819 3.26589 3.32428 3.53925 3.90183 3.95704 4.10010 4.20942 4.24567 4.38313 4.57696 4.65675 4.74746 4.83361 4.86454 5.00573 5.01975 5.07591 5.14405 5.17737 5.22957 5.27703 5.34253 5.38601 5.44653 5.48590 5.54012 5.60818 5.64948 5.71957 5.73878 5.79537 5.84383 5.87298 5.93211 6.14789 6.16563 6.29002 6.34095 6.59107 6.63080 7.22722 7.34942 7.55151 7.73023 8.05652 8.06739 8.61487 9.18058 9.54448 10.05891 10.75891 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023140 B = 0.002325 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.716118 B =12040.492743 C =12105.835086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.085 3.915 3 H 0.110 0.890 4 O -0.366 6.366 5 C 0.048 3.952 6 C -0.139 4.139 7 C -0.144 4.144 8 H 0.106 0.894 9 C 0.516 3.484 10 O -0.533 6.533 11 N -0.603 5.603 12 C 0.105 3.895 13 C -0.133 4.133 14 C 0.073 3.927 15 N -0.540 5.540 16 C 0.054 3.946 17 C 0.442 3.558 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.062 3.938 29 C 0.119 3.881 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.112 0.888 48 H 0.013 0.987 49 H 0.087 0.913 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.917 -6.427 -10.694 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.027 3.973 3 H 0.128 0.872 4 O -0.284 6.284 5 C -0.029 4.029 6 C -0.177 4.177 7 C -0.166 4.166 8 H 0.124 0.876 9 C 0.303 3.697 10 O -0.409 6.409 11 N -0.336 5.336 12 C -0.017 4.017 13 C -0.171 4.171 14 C -0.055 4.055 15 N -0.264 5.264 16 C -0.077 4.077 17 C 0.228 3.772 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.067 4.067 29 C -0.003 4.003 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.130 0.870 48 H 0.031 0.969 49 H 0.105 0.895 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.886 -5.059 -10.477 24.786 hybrid contribution 1.073 -0.551 -0.006 1.206 sum -20.812 -5.609 -10.483 23.969 Atomic orbital electron populations 1.22303 0.95201 1.02441 1.02821 1.22723 0.93555 0.98014 0.83017 0.87231 1.88946 1.86067 1.20487 1.32934 1.23580 0.99781 0.84808 0.94722 1.23122 1.01160 0.96643 0.96775 1.22845 0.99012 0.96708 0.98033 0.87635 1.20343 0.82513 0.84637 0.82240 1.90716 1.48947 1.31582 1.69658 1.47938 1.40488 1.36728 1.08395 1.22088 0.93496 0.89590 0.96566 1.21904 0.95293 1.00055 0.99868 1.21516 0.92603 0.93908 0.97465 1.57766 1.08179 1.06364 1.54134 1.21825 0.88692 0.98200 0.98957 1.19798 0.82919 0.88697 0.85832 1.90480 1.70097 1.27723 1.57882 1.41883 1.09797 1.21217 1.47191 1.19693 0.93566 1.01978 1.27504 0.87908 1.25262 0.97153 0.97251 0.98310 1.69614 1.14748 1.23865 1.46135 0.85863 0.78406 0.80444 0.79612 1.20418 1.20954 1.19412 1.21790 0.98401 0.92794 0.93729 1.21635 0.87414 0.94181 0.97107 0.91478 0.91439 0.92288 0.91995 0.88641 0.89927 0.89380 0.91551 0.90361 0.89485 0.90370 0.94702 0.91062 0.93651 0.89480 0.77531 0.91892 0.87038 0.96875 0.89470 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.30 37.16 0.35 -0.90 16 2 C 0.09 0.86 3.62 -26.16 -0.09 0.77 16 3 H 0.11 1.37 6.79 -51.93 -0.35 1.02 16 4 O -0.37 -4.17 11.19 -35.23 -0.39 -4.57 16 5 C 0.05 0.38 7.67 38.34 0.29 0.67 16 6 C -0.14 -1.13 6.56 -24.60 -0.16 -1.29 16 7 C -0.14 -1.31 2.10 -90.24 -0.19 -1.50 16 8 H 0.11 0.69 5.85 -51.93 -0.30 0.38 16 9 C 0.52 6.56 6.65 -10.99 -0.07 6.49 16 10 O -0.53 -9.01 15.03 5.56 0.08 -8.93 16 11 N -0.60 -7.10 2.18 -172.45 -0.38 -7.47 16 12 C 0.11 0.87 5.86 -3.02 -0.02 0.85 16 13 C -0.13 -1.21 5.78 -27.18 -0.16 -1.37 16 14 C 0.07 0.85 5.32 -5.08 -0.03 0.82 16 15 N -0.54 -8.53 3.60 -240.95 -0.87 -9.39 16 16 C 0.05 0.94 5.44 -4.98 -0.03 0.91 16 17 C 0.44 10.22 7.37 -10.99 -0.08 10.14 16 18 O -0.58 -15.11 13.97 5.55 0.08 -15.03 16 19 N -0.56 -14.17 5.29 -10.97 -0.06 -14.22 16 20 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 24 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 C 0.06 1.05 5.01 -5.74 -0.03 1.02 16 29 C 0.12 1.73 5.55 -3.97 -0.02 1.71 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.36 8.11 -51.92 -0.42 -0.06 16 33 H 0.06 0.37 8.11 -51.93 -0.42 -0.05 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 36 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.47 5.39 -51.93 -0.28 0.19 16 39 H 0.09 0.98 7.98 -51.93 -0.41 0.56 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.03 0.41 7.32 -51.93 -0.38 0.02 16 42 H 0.07 0.75 7.36 -51.93 -0.38 0.37 16 43 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 44 H 0.09 1.35 7.57 -51.93 -0.39 0.95 16 45 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 46 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.11 2.29 5.62 -51.93 -0.29 1.99 16 48 H 0.01 0.23 8.11 -51.93 -0.42 -0.19 16 49 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 50 H 0.09 1.35 7.22 -51.93 -0.37 0.98 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -33.32 388.28 -8.52 -41.83 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.05 Total: 9.26 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -0.48 Total: 10.41 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.58 Total: -54.89 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.23 Total: -28.52 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.32 -8.52 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197554510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.976 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds