Wall clock time and date at job start Tue Mar 31 2020 23:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.86987 * 2 1 4 4 O 1.43743 * 109.87768 * 238.83475 * 2 1 3 5 5 C 1.44370 * 106.97865 * 267.08774 * 4 2 1 6 6 C 1.55228 * 103.56995 * 320.01473 * 5 4 2 7 7 C 1.54097 * 109.87779 * 121.00804 * 2 1 3 8 8 H 1.08999 * 110.49106 * 358.58010 * 7 2 1 9 9 C 1.50704 * 110.48684 * 236.07468 * 7 2 1 10 10 O 1.21280 * 119.99953 * 335.17973 * 9 7 2 11 11 N 1.34771 * 120.00181 * 155.18759 * 9 7 2 12 12 C 1.47608 * 118.75067 * 355.34425 * 11 9 7 13 13 C 1.53803 * 111.30763 * 138.29499 * 12 11 9 14 14 C 1.51275 * 109.62768 * 319.96374 * 13 12 11 15 15 N 1.46196 * 109.10475 * 92.40458 * 14 13 12 16 16 C 1.46896 * 111.00342 * 144.76590 * 15 14 13 17 17 C 1.50694 * 109.47684 * 197.08228 * 16 15 14 18 18 O 1.21293 * 119.99805 * 0.02562 * 17 16 15 19 19 N 1.34769 * 120.00253 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00196 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99658 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00097 * 179.72683 * 20 19 17 23 23 N 1.31414 * 119.99916 * 0.27647 * 22 20 19 24 24 Si 1.86800 * 120.00106 * 180.27673 * 22 20 19 25 25 H 1.48501 * 109.47050 * 89.99959 * 24 22 20 26 26 H 1.48501 * 109.47208 * 210.00162 * 24 22 20 27 27 H 1.48502 * 109.46917 * 330.00065 * 24 22 20 28 28 C 1.41448 * 116.34779 * 272.97811 * 15 14 13 29 29 C 1.44888 * 118.74922 * 175.32194 * 11 9 7 30 30 H 1.09002 * 109.47279 * 298.98915 * 1 2 3 31 31 H 1.08999 * 109.47407 * 58.99526 * 1 2 3 32 32 H 1.09011 * 109.46821 * 178.99487 * 1 2 3 33 33 H 1.09004 * 110.61988 * 78.44448 * 5 4 2 34 34 H 1.09004 * 110.62339 * 201.28578 * 5 4 2 35 35 H 1.09001 * 110.88719 * 278.75023 * 6 5 4 36 36 H 1.08997 * 111.02381 * 155.07184 * 6 5 4 37 37 H 1.08997 * 109.11715 * 258.76659 * 12 11 9 38 38 H 1.09002 * 109.11201 * 17.88776 * 12 11 9 39 39 H 1.09003 * 109.44285 * 80.00550 * 13 12 11 40 40 H 1.08999 * 109.44691 * 199.94559 * 13 12 11 41 41 H 1.09004 * 109.53049 * 332.51826 * 14 13 12 42 42 H 1.08992 * 109.53272 * 212.29540 * 14 13 12 43 43 H 1.09006 * 109.46864 * 77.08022 * 16 15 14 44 44 H 1.08998 * 109.47100 * 317.09053 * 16 15 14 45 45 H 0.97000 * 120.00395 * 0.02562 * 19 17 16 46 46 H 0.97006 * 119.99969 * 179.97438 * 23 22 20 47 47 H 1.08995 * 109.38476 * 183.63693 * 28 15 14 48 48 H 1.09003 * 109.37950 * 303.42165 * 28 15 14 49 49 H 1.08995 * 109.43574 * 149.67636 * 29 11 9 50 50 H 1.09000 * 109.39388 * 29.79046 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1567 5 6 2.2281 -2.0724 -0.7619 6 6 2.8317 -1.9535 0.6633 7 6 2.0540 -0.7465 1.2421 8 1 1.2238 -1.0885 1.8601 9 6 2.9743 0.1399 2.0411 10 8 3.5601 1.0523 1.4977 11 7 3.1464 -0.0813 3.3593 12 6 2.3424 -1.1319 4.0138 13 6 3.1914 -1.9532 4.9988 14 6 4.5601 -2.2023 4.4048 15 7 5.4702 -1.1438 4.8392 16 6 6.8261 -1.6684 5.0492 17 6 7.6203 -0.6912 5.8769 18 8 7.1072 0.3407 6.2551 19 7 8.9008 -0.9638 6.1969 20 6 9.6236 -0.0745 6.9494 21 1 9.1667 0.8443 7.2862 22 6 10.9420 -0.3582 7.2841 23 7 11.4978 -1.4764 6.8747 24 14 11.9244 0.8499 8.3160 25 1 11.7506 0.5274 9.7551 26 1 13.3621 0.7528 7.9571 27 1 11.4415 2.2299 8.0561 28 6 5.4967 0.0264 4.0450 29 6 4.1141 0.7209 4.0800 30 1 -0.3634 0.4981 0.8989 31 1 -0.3634 0.5293 -0.8808 32 1 -0.3633 -1.0276 -0.0180 33 1 1.2814 -2.6118 -0.7321 34 1 2.9274 -2.5640 -1.4382 35 1 3.8999 -1.7416 0.6164 36 1 2.6404 -2.8549 1.2454 37 1 1.5188 -0.6661 4.5549 38 1 1.9372 -1.7979 3.2520 39 1 3.2964 -1.4028 5.9338 40 1 2.7012 -2.9073 5.1925 41 1 4.4912 -2.1999 3.3170 42 1 4.9349 -3.1675 4.7451 43 1 7.3146 -1.8091 4.0850 44 1 6.7692 -2.6241 5.5704 45 1 9.3113 -1.7889 5.8941 46 1 12.4184 -1.6743 7.1080 47 1 6.2542 0.7085 4.4309 48 1 5.7402 -0.2401 3.0164 49 1 3.7916 0.8352 5.1149 50 1 4.1896 1.7030 3.6131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197554510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:39 Heat of formation + Delta-G solvation = -121.383946 kcal Electronic energy + Delta-G solvation = -31062.007296 eV Core-core repulsion = 26895.667002 eV Total energy + Delta-G solvation = -4166.340294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00132 -40.69514 -39.81044 -38.63117 -36.42289 -35.75774 -33.90784 -33.31020 -33.27206 -32.19831 -30.63162 -28.40021 -27.58802 -26.94514 -25.74256 -23.93767 -22.93540 -22.10403 -21.67944 -21.04906 -19.94734 -19.72691 -18.76587 -17.95643 -17.51383 -17.16193 -16.84094 -16.68960 -16.60400 -16.24244 -16.13896 -15.62668 -15.50820 -15.42208 -15.06537 -14.62434 -14.36509 -14.29703 -14.24979 -13.71871 -13.66558 -13.46255 -13.24940 -13.04343 -12.88472 -12.84605 -12.74136 -12.58178 -12.47153 -12.41779 -12.31961 -12.14163 -11.98517 -11.95068 -11.80525 -11.62579 -11.46012 -10.81708 -10.63006 -10.28855 -10.00406 -9.69858 -9.09391 -8.46839 -5.95176 1.36857 1.40437 1.46077 1.53042 1.93002 2.05780 2.27781 2.75105 2.88055 3.20002 3.31988 3.40792 3.50650 3.72167 3.84760 3.95228 4.02259 4.11367 4.13612 4.17098 4.23785 4.28901 4.38104 4.39701 4.41360 4.49836 4.53941 4.58537 4.61960 4.65793 4.75872 4.79582 4.84214 4.88112 4.90439 5.00781 5.01847 5.11381 5.13205 5.26828 5.34086 5.40718 5.60839 5.91784 5.93802 6.13483 6.28710 6.53260 6.60734 7.08798 7.13126 7.56921 8.12663 8.70561 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023140 B = 0.002325 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.716118 B =12040.492743 C =12105.835086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.080 3.920 3 H 0.072 0.928 4 O -0.398 6.398 5 C 0.044 3.956 6 C -0.135 4.135 7 C -0.134 4.134 8 H 0.146 0.854 9 C 0.509 3.491 10 O -0.587 6.587 11 N -0.599 5.599 12 C 0.098 3.902 13 C -0.127 4.127 14 C 0.068 3.932 15 N -0.549 5.549 16 C 0.065 3.935 17 C 0.440 3.560 18 O -0.612 6.612 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.269 1.269 26 H -0.272 1.272 27 H -0.275 1.275 28 C 0.075 3.925 29 C 0.132 3.868 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.039 0.961 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.117 0.883 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.066 0.934 48 H -0.001 1.001 49 H 0.088 0.912 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.406 -9.403 -10.391 28.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 H 0.090 0.910 4 O -0.318 6.318 5 C -0.032 4.032 6 C -0.173 4.173 7 C -0.155 4.155 8 H 0.163 0.837 9 C 0.299 3.701 10 O -0.468 6.468 11 N -0.331 5.331 12 C -0.022 4.022 13 C -0.165 4.165 14 C -0.058 4.058 15 N -0.273 5.273 16 C -0.065 4.065 17 C 0.227 3.773 18 O -0.498 6.498 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.200 1.200 28 C -0.055 4.055 29 C 0.007 3.993 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.144 0.856 37 H 0.104 0.896 38 H 0.131 0.869 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.057 0.943 42 H 0.108 0.892 43 H 0.073 0.927 44 H 0.135 0.865 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.017 0.983 49 H 0.106 0.894 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.410 -8.091 -10.168 27.653 hybrid contribution 1.826 0.379 -0.141 1.870 sum -22.584 -7.713 -10.309 25.996 Atomic orbital electron populations 1.22242 0.92616 1.03915 1.03179 1.22719 0.95447 0.96346 0.83335 0.91014 1.88910 1.86535 1.22501 1.33866 1.23824 1.01445 0.83428 0.94533 1.23162 0.99153 0.97447 0.97566 1.22893 0.99208 0.95972 0.97411 0.83683 1.21093 0.82325 0.84313 0.82404 1.90696 1.51196 1.34102 1.70777 1.48016 1.39804 1.37042 1.08203 1.22455 0.93162 0.89082 0.97502 1.21897 0.94077 1.01864 0.98660 1.21744 0.92960 0.93086 0.98018 1.57809 1.07828 1.07282 1.54418 1.21731 0.89017 0.97349 0.98449 1.20862 0.82485 0.88990 0.84961 1.90460 1.70758 1.29560 1.59043 1.41956 1.10569 1.21148 1.47678 1.19635 0.94716 1.02199 1.29417 0.90384 1.26022 0.97474 0.98895 0.98973 1.69673 1.15236 1.24801 1.46537 0.84950 0.77281 0.77916 0.78330 1.19458 1.19632 1.19963 1.21479 0.98579 0.92892 0.92536 1.21256 0.87178 0.93621 0.97219 0.90307 0.92044 0.90077 0.88940 0.88221 0.92983 0.85573 0.89555 0.86873 0.91687 0.86310 0.94264 0.89165 0.92682 0.86501 0.77106 0.91354 0.91573 0.98342 0.89368 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.30 71.98 0.67 -1.30 16 2 C 0.08 1.55 3.62 30.97 0.11 1.66 16 3 H 0.07 1.92 6.79 -2.39 -0.02 1.90 16 4 O -0.40 -8.81 11.19 -148.98 -1.67 -10.48 16 5 C 0.04 0.57 7.67 72.75 0.56 1.13 16 6 C -0.14 -1.80 6.56 31.98 0.21 -1.59 16 7 C -0.13 -2.09 2.10 -10.55 -0.02 -2.11 16 8 H 0.15 1.09 5.85 -2.39 -0.01 1.08 16 9 C 0.51 12.78 6.65 87.66 0.58 13.37 16 10 O -0.59 -21.16 15.03 -3.03 -0.05 -21.20 16 11 N -0.60 -13.40 2.18 -817.91 -1.79 -15.18 16 12 C 0.10 1.21 5.86 86.44 0.51 1.72 16 13 C -0.13 -1.79 5.78 30.30 0.18 -1.62 16 14 C 0.07 1.37 5.32 85.87 0.46 1.83 16 15 N -0.55 -17.03 3.60 -916.23 -3.30 -20.33 16 16 C 0.07 2.24 5.44 85.56 0.47 2.71 16 17 C 0.44 20.97 7.37 87.66 0.65 21.61 16 18 O -0.61 -33.62 13.97 -3.07 -0.04 -33.66 16 19 N -0.58 -29.80 5.29 -306.99 -1.62 -31.43 16 20 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 23 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 24 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 C 0.08 2.67 5.01 87.90 0.44 3.11 16 29 C 0.13 3.97 5.55 87.28 0.48 4.45 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.64 8.11 -2.38 -0.02 0.62 16 33 H 0.09 0.68 8.11 -2.39 -0.02 0.66 16 34 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.05 1.03 7.86 -2.39 -0.02 1.01 16 36 H 0.13 0.71 8.08 -2.39 -0.02 0.69 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.11 0.64 5.39 -2.39 -0.01 0.63 16 39 H 0.06 1.27 7.98 -2.39 -0.02 1.25 16 40 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.04 0.78 7.32 -2.38 -0.02 0.77 16 42 H 0.09 1.51 7.36 -2.39 -0.02 1.50 16 43 H 0.06 1.81 8.11 -2.38 -0.02 1.79 16 44 H 0.12 3.35 7.57 -2.39 -0.02 3.33 16 45 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 46 H 0.28 14.13 8.31 -92.70 -0.77 13.36 16 47 H 0.07 2.94 5.62 -2.39 -0.01 2.93 16 48 H 0.00 -0.05 8.11 -2.39 -0.02 -0.07 16 49 H 0.09 2.62 8.11 -2.39 -0.02 2.60 16 50 H 0.07 2.23 7.22 -2.39 -0.02 2.22 16 Total: -1.00 -79.40 388.28 0.63 -78.77 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.22 Total: 31.26 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 6.57 Total: 26.58 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -6.43 Total: -116.83 kcal Atomic # 8 Polarization: -63.58 SS G_CDS: -1.76 Total: -65.34 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -79.40 0.63 -78.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197554510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.615 kcal (2) G-P(sol) polarization free energy of solvation -79.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds