Wall clock time and date at job start Tue Mar 31 2020 23:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.66690 * 2 1 4 4 C 1.53070 * 109.67271 * 120.49574 * 2 1 3 5 5 C 1.50184 * 109.81661 * 168.67650 * 4 2 1 6 6 O 1.21284 * 118.24189 * 162.37662 * 5 4 2 7 7 N 1.33229 * 123.59856 * 342.28951 * 5 4 2 8 8 C 1.45760 * 124.07122 * 2.37671 * 7 5 4 9 9 H 1.08997 * 109.13062 * 101.05199 * 8 7 5 10 10 C 1.50695 * 109.30044 * 220.53975 * 8 7 5 11 11 O 1.21277 * 120.00296 * 16.20807 * 10 8 7 12 12 N 1.34780 * 119.99817 * 196.20921 * 10 8 7 13 13 C 1.47504 * 118.75623 * 4.89300 * 12 10 8 14 14 C 1.53947 * 110.82352 * 138.25645 * 13 12 10 15 15 C 1.51536 * 109.72233 * 320.30384 * 14 13 12 16 16 O 1.42150 * 108.76638 * 91.29559 * 15 14 13 17 17 C 1.38015 * 119.43918 * 272.78052 * 16 15 14 18 18 H 1.09000 * 109.46734 * 303.42596 * 17 16 15 19 19 C 1.52995 * 109.47152 * 183.43055 * 17 16 15 20 20 N 1.46508 * 109.47193 * 64.98787 * 19 17 16 21 21 C 1.36939 * 120.00070 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99788 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99576 * 180.02562 * 21 20 19 24 24 N 1.31607 * 120.00252 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99529 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47512 * 59.99974 * 25 23 21 27 27 H 1.48502 * 109.47089 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47104 * 299.99933 * 25 23 21 29 29 C 1.45116 * 118.75574 * 185.16073 * 12 10 8 30 30 C 1.52926 * 110.48535 * 340.85234 * 8 7 5 31 31 H 1.09001 * 109.46960 * 299.49963 * 1 2 3 32 32 H 1.08990 * 109.47386 * 59.50419 * 1 2 3 33 33 H 1.09003 * 109.46955 * 179.50771 * 1 2 3 34 34 H 1.08994 * 109.40597 * 288.76414 * 4 2 1 35 35 H 1.09005 * 109.40030 * 48.59729 * 4 2 1 36 36 H 0.96997 * 117.98665 * 182.30644 * 7 5 4 37 37 H 1.09009 * 109.16769 * 258.77195 * 13 12 10 38 38 H 1.08995 * 109.16783 * 17.96786 * 13 12 10 39 39 H 1.08995 * 109.46478 * 200.17899 * 14 13 12 40 40 H 1.08995 * 109.28025 * 80.31850 * 14 13 12 41 41 H 1.09000 * 109.58896 * 331.50427 * 15 14 13 42 42 H 1.09004 * 109.70420 * 211.15082 * 15 14 13 43 43 H 1.09003 * 109.47128 * 184.98457 * 19 17 16 44 44 H 1.09006 * 109.47466 * 304.98791 * 19 17 16 45 45 H 0.96995 * 119.99652 * 359.97438 * 20 19 17 46 46 H 0.97002 * 119.99911 * 180.02562 * 24 23 21 47 47 H 1.08998 * 109.46938 * 29.30552 * 29 12 10 48 48 H 1.09008 * 109.46315 * 149.27657 * 29 12 10 49 49 H 1.09001 * 109.59952 * 290.99258 * 30 8 7 50 50 H 1.08998 * 109.73397 * 170.59112 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0454 -0.7315 1.2420 5 6 3.5213 -0.9771 1.1124 6 8 4.1489 -1.2440 2.1153 7 7 4.1795 -0.9196 -0.0445 8 6 3.5643 -0.5641 -1.3172 9 1 3.8000 0.4742 -1.5502 10 6 4.1130 -1.4551 -2.4017 11 8 4.6985 -2.4761 -2.1093 12 7 3.9530 -1.1172 -3.6966 13 6 3.3341 0.1822 -4.0197 14 6 4.0711 0.8644 -5.1864 15 6 5.5647 0.6538 -5.0408 16 8 5.9305 -0.5275 -5.7419 17 6 5.8612 -1.7468 -5.0990 18 1 6.4701 -1.7161 -4.1954 19 6 6.3833 -2.8439 -6.0287 20 7 7.8079 -2.6243 -6.2915 21 6 8.4953 -3.4869 -7.1031 22 1 7.9872 -4.3288 -7.5498 23 6 9.8451 -3.2791 -7.3515 24 7 10.4642 -2.2534 -6.8067 25 14 10.7827 -4.4553 -8.4592 26 1 10.1660 -4.4611 -9.8100 27 1 12.1976 -4.0164 -8.5624 28 1 10.7301 -5.8239 -7.8853 29 6 4.3907 -2.0480 -4.7202 30 6 2.0462 -0.7335 -1.2437 31 1 -0.3633 0.5060 0.8945 32 1 -0.3633 0.5215 -0.8854 33 1 -0.3633 -1.0277 -0.0088 34 1 1.8559 -0.1223 2.1257 35 1 1.5270 -1.6852 1.3416 36 1 5.1272 -1.1261 -0.0398 37 1 2.2912 0.0235 -4.2944 38 1 3.3778 0.8274 -3.1423 39 1 3.8528 1.9323 -5.1792 40 1 3.7335 0.4312 -6.1279 41 1 5.8174 0.5459 -3.9860 42 1 6.0987 1.5071 -5.4590 43 1 6.2469 -3.8164 -5.5557 44 1 5.8321 -2.8165 -6.9687 45 1 8.2640 -1.8680 -5.8906 46 1 11.4074 -2.1081 -6.9807 47 1 4.3149 -3.0671 -4.3410 48 1 3.7593 -1.9410 -5.6024 49 1 1.7996 -1.7928 -1.1722 50 1 1.5850 -0.3101 -2.1359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200528437.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:07 Heat of formation + Delta-G solvation = -98.738522 kcal Electronic energy + Delta-G solvation = -31080.794293 eV Core-core repulsion = 26915.435978 eV Total energy + Delta-G solvation = -4165.358315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43329 -40.13443 -38.58520 -37.05673 -35.82643 -34.68790 -34.40397 -32.90577 -31.02468 -30.71608 -28.77410 -28.31708 -26.81078 -25.73685 -24.45795 -22.68307 -21.93280 -21.79974 -21.01344 -19.75559 -19.52242 -17.80476 -17.61539 -17.16230 -16.92578 -16.50693 -16.14626 -15.92549 -15.65415 -14.94478 -14.76186 -14.62755 -14.58373 -14.22062 -13.90027 -13.79846 -13.66987 -13.19492 -13.13698 -12.96501 -12.69175 -12.65646 -12.39675 -12.29279 -12.09509 -11.90173 -11.71739 -11.47757 -11.43088 -11.33170 -11.02251 -10.82362 -10.75492 -10.37239 -10.28828 -10.06233 -9.95467 -9.67564 -9.48991 -9.33007 -8.82314 -8.69698 -6.84807 -5.68887 -2.97276 2.19933 2.27971 2.59072 3.00609 3.49076 3.52712 3.54185 3.80680 3.90905 4.01165 4.07147 4.15832 4.28444 4.43209 4.50445 4.61856 4.67067 4.81004 4.86032 4.97889 5.04804 5.09234 5.15268 5.18365 5.21844 5.24847 5.29282 5.35057 5.38842 5.43042 5.52259 5.57963 5.63842 5.71020 5.76267 5.87884 5.92218 6.04545 6.32259 6.33889 6.43420 6.64188 6.76311 6.94081 7.04054 7.74465 7.81161 7.93347 7.95611 8.49321 9.60743 10.18628 10.54360 11.54016 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018193 B = 0.002558 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.725832 B =10944.342657 C =11752.364641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.083 0.917 4 C -0.132 4.132 5 C 0.523 3.477 6 O -0.553 6.553 7 N -0.700 5.700 8 C 0.124 3.876 9 H 0.100 0.900 10 C 0.495 3.505 11 O -0.516 6.516 12 N -0.603 5.603 13 C 0.100 3.900 14 C -0.167 4.167 15 C 0.073 3.927 16 O -0.367 6.367 17 C 0.089 3.911 18 H 0.053 0.947 19 C 0.166 3.834 20 N -0.726 5.726 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.081 3.919 30 C -0.124 4.124 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.407 0.593 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.034 0.966 44 H 0.027 0.973 45 H 0.387 0.613 46 H 0.255 0.745 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.625 11.307 11.230 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.310 3.690 6 O -0.431 6.431 7 N -0.353 5.353 8 C 0.015 3.985 9 H 0.118 0.882 10 C 0.280 3.720 11 O -0.390 6.390 12 N -0.337 5.337 13 C -0.022 4.022 14 C -0.205 4.205 15 C -0.004 4.004 16 O -0.285 6.285 17 C 0.029 3.971 18 H 0.071 0.929 19 C 0.038 3.962 20 N -0.370 5.370 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.042 4.042 30 C -0.162 4.162 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.245 0.755 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.220 0.780 46 H 0.065 0.935 47 H 0.111 0.889 48 H 0.104 0.896 49 H 0.100 0.900 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.128 10.534 11.619 29.621 hybrid contribution 0.928 -0.380 -0.408 1.082 sum -24.201 10.154 11.211 28.539 Atomic orbital electron populations 1.21811 0.93554 1.02522 1.02483 1.21267 0.96945 0.99803 0.93212 0.89850 1.21779 0.91696 1.03535 1.00147 1.20119 0.90389 0.76024 0.82445 1.90790 1.68253 1.48901 1.35167 1.45261 1.13975 1.70092 1.05981 1.20964 0.95067 0.98743 0.83756 0.88237 1.20810 0.80324 0.87028 0.83837 1.90801 1.40395 1.25814 1.81985 1.47919 1.61085 1.19068 1.05630 1.22230 0.96942 0.83615 0.99391 1.22579 0.97468 1.01315 0.99150 1.22109 0.93130 0.88428 0.96734 1.86449 1.86991 1.13066 1.42033 1.22269 0.93218 0.85041 0.96586 0.92921 1.20606 0.87576 0.92756 0.95258 1.42214 1.03658 1.32771 1.58359 1.19179 0.91780 1.05034 1.20965 0.91234 1.24736 0.96792 0.98438 1.01052 1.69661 1.10147 1.30153 1.48177 0.86255 0.79029 0.80336 0.80484 1.21291 1.21728 1.21294 1.22479 0.97125 0.93982 0.90622 1.21974 0.91213 1.03063 0.99946 0.91955 0.91953 0.92184 0.87841 0.87939 0.75524 0.90975 0.89908 0.89520 0.89759 0.93652 0.89168 0.94819 0.95503 0.77961 0.93537 0.88869 0.89597 0.89984 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 9.20 37.16 0.34 -0.10 16 2 C -0.09 -0.40 2.80 -90.41 -0.25 -0.66 16 3 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 4 C -0.13 -0.88 5.36 -28.10 -0.15 -1.03 16 5 C 0.52 5.79 7.71 -11.92 -0.09 5.70 16 6 O -0.55 -8.65 17.78 5.55 0.10 -8.55 16 7 N -0.70 -7.31 4.79 -56.01 -0.27 -7.58 16 8 C 0.12 0.97 2.65 -69.52 -0.18 0.79 16 9 H 0.10 0.55 6.30 -51.93 -0.33 0.23 16 10 C 0.49 5.68 6.82 -10.99 -0.07 5.61 16 11 O -0.52 -8.39 15.77 5.56 0.09 -8.30 16 12 N -0.60 -6.16 2.18 -172.24 -0.38 -6.54 16 13 C 0.10 0.64 5.02 -3.00 -0.02 0.62 16 14 C -0.17 -1.29 5.79 -26.98 -0.16 -1.45 16 15 C 0.07 0.87 6.37 36.42 0.23 1.10 16 16 O -0.37 -6.21 9.38 -26.54 -0.25 -6.45 16 17 C 0.09 1.53 2.68 -25.78 -0.07 1.46 16 18 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 19 C 0.17 3.49 5.92 -4.04 -0.02 3.47 16 20 N -0.73 -19.40 5.54 -59.90 -0.33 -19.73 16 21 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.42 5.50 -17.44 -0.10 -0.52 16 24 N -0.93 -29.20 13.06 55.49 0.72 -28.47 16 25 Si 0.91 23.03 29.55 -169.99 -5.02 18.00 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 C 0.08 1.06 4.82 -3.83 -0.02 1.04 16 30 C -0.12 -0.66 4.42 -26.60 -0.12 -0.77 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.41 4.95 8.37 -40.82 -0.34 4.61 16 37 H 0.07 0.32 7.97 -51.92 -0.41 -0.09 16 38 H 0.08 0.34 5.43 -51.93 -0.28 0.05 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.75 8.01 -51.93 -0.42 0.33 16 41 H 0.05 0.54 7.41 -51.93 -0.38 0.16 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.39 11.02 7.65 -40.82 -0.31 10.70 16 46 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.09 1.32 7.35 -51.93 -0.38 0.94 16 48 H 0.09 0.98 8.11 -51.92 -0.42 0.56 16 49 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 50 H 0.09 0.30 6.95 -51.93 -0.36 -0.06 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -37.87 391.71 -8.52 -46.38 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.26 Total: 7.15 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -0.83 Total: 8.18 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -0.25 Total: -62.32 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.06 Total: -23.31 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.87 -8.52 -46.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200528437.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.354 kcal (2) G-P(sol) polarization free energy of solvation -37.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds