Wall clock time and date at job start Tue Mar 31 2020 23:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.66690 * 2 1 4 4 C 1.53070 * 109.67271 * 120.49574 * 2 1 3 5 5 C 1.50184 * 109.81661 * 168.67650 * 4 2 1 6 6 O 1.21284 * 118.24189 * 162.37662 * 5 4 2 7 7 N 1.33229 * 123.59856 * 342.28951 * 5 4 2 8 8 C 1.45760 * 124.07122 * 2.37671 * 7 5 4 9 9 H 1.08997 * 109.13062 * 101.05199 * 8 7 5 10 10 C 1.50695 * 109.30044 * 220.53975 * 8 7 5 11 11 O 1.21277 * 120.00296 * 16.20807 * 10 8 7 12 12 N 1.34780 * 119.99817 * 196.20921 * 10 8 7 13 13 C 1.47504 * 118.75623 * 4.89300 * 12 10 8 14 14 C 1.53947 * 110.82352 * 138.25645 * 13 12 10 15 15 C 1.51536 * 109.72233 * 320.30384 * 14 13 12 16 16 O 1.42150 * 108.76638 * 91.29559 * 15 14 13 17 17 C 1.38015 * 119.43918 * 272.78052 * 16 15 14 18 18 H 1.09000 * 109.46734 * 303.42596 * 17 16 15 19 19 C 1.52995 * 109.47152 * 183.43055 * 17 16 15 20 20 N 1.46508 * 109.47193 * 64.98787 * 19 17 16 21 21 C 1.36939 * 120.00070 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99788 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99576 * 180.02562 * 21 20 19 24 24 N 1.31607 * 120.00252 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99529 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47512 * 59.99974 * 25 23 21 27 27 H 1.48502 * 109.47089 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47104 * 299.99933 * 25 23 21 29 29 C 1.45116 * 118.75574 * 185.16073 * 12 10 8 30 30 C 1.52926 * 110.48535 * 340.85234 * 8 7 5 31 31 H 1.09001 * 109.46960 * 299.49963 * 1 2 3 32 32 H 1.08990 * 109.47386 * 59.50419 * 1 2 3 33 33 H 1.09003 * 109.46955 * 179.50771 * 1 2 3 34 34 H 1.08994 * 109.40597 * 288.76414 * 4 2 1 35 35 H 1.09005 * 109.40030 * 48.59729 * 4 2 1 36 36 H 0.96997 * 117.98665 * 182.30644 * 7 5 4 37 37 H 1.09009 * 109.16769 * 258.77195 * 13 12 10 38 38 H 1.08995 * 109.16783 * 17.96786 * 13 12 10 39 39 H 1.08995 * 109.46478 * 200.17899 * 14 13 12 40 40 H 1.08995 * 109.28025 * 80.31850 * 14 13 12 41 41 H 1.09000 * 109.58896 * 331.50427 * 15 14 13 42 42 H 1.09004 * 109.70420 * 211.15082 * 15 14 13 43 43 H 1.09003 * 109.47128 * 184.98457 * 19 17 16 44 44 H 1.09006 * 109.47466 * 304.98791 * 19 17 16 45 45 H 0.96995 * 119.99652 * 359.97438 * 20 19 17 46 46 H 0.97002 * 119.99911 * 180.02562 * 24 23 21 47 47 H 1.08998 * 109.46938 * 29.30552 * 29 12 10 48 48 H 1.09008 * 109.46315 * 149.27657 * 29 12 10 49 49 H 1.09001 * 109.59952 * 290.99258 * 30 8 7 50 50 H 1.08998 * 109.73397 * 170.59112 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0454 -0.7315 1.2420 5 6 3.5213 -0.9771 1.1124 6 8 4.1489 -1.2440 2.1153 7 7 4.1795 -0.9196 -0.0445 8 6 3.5643 -0.5641 -1.3172 9 1 3.8000 0.4742 -1.5502 10 6 4.1130 -1.4551 -2.4017 11 8 4.6985 -2.4761 -2.1093 12 7 3.9530 -1.1172 -3.6966 13 6 3.3341 0.1822 -4.0197 14 6 4.0711 0.8644 -5.1864 15 6 5.5647 0.6538 -5.0408 16 8 5.9305 -0.5275 -5.7419 17 6 5.8612 -1.7468 -5.0990 18 1 6.4701 -1.7161 -4.1954 19 6 6.3833 -2.8439 -6.0287 20 7 7.8079 -2.6243 -6.2915 21 6 8.4953 -3.4869 -7.1031 22 1 7.9872 -4.3288 -7.5498 23 6 9.8451 -3.2791 -7.3515 24 7 10.4642 -2.2534 -6.8067 25 14 10.7827 -4.4553 -8.4592 26 1 10.1660 -4.4611 -9.8100 27 1 12.1976 -4.0164 -8.5624 28 1 10.7301 -5.8239 -7.8853 29 6 4.3907 -2.0480 -4.7202 30 6 2.0462 -0.7335 -1.2437 31 1 -0.3633 0.5060 0.8945 32 1 -0.3633 0.5215 -0.8854 33 1 -0.3633 -1.0277 -0.0088 34 1 1.8559 -0.1223 2.1257 35 1 1.5270 -1.6852 1.3416 36 1 5.1272 -1.1261 -0.0398 37 1 2.2912 0.0235 -4.2944 38 1 3.3778 0.8274 -3.1423 39 1 3.8528 1.9323 -5.1792 40 1 3.7335 0.4312 -6.1279 41 1 5.8174 0.5459 -3.9860 42 1 6.0987 1.5071 -5.4590 43 1 6.2469 -3.8164 -5.5557 44 1 5.8321 -2.8165 -6.9687 45 1 8.2640 -1.8680 -5.8906 46 1 11.4074 -2.1081 -6.9807 47 1 4.3149 -3.0671 -4.3410 48 1 3.7593 -1.9410 -5.6024 49 1 1.7996 -1.7928 -1.1722 50 1 1.5850 -0.3101 -2.1359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200528437.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:06 Heat of formation + Delta-G solvation = -128.181213 kcal Electronic energy + Delta-G solvation = -31082.071024 eV Core-core repulsion = 26915.435978 eV Total energy + Delta-G solvation = -4166.635046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.25325 -41.06409 -39.69931 -37.78166 -36.95805 -36.30542 -35.08016 -34.29951 -32.67212 -31.63203 -29.99929 -28.79339 -27.81025 -26.83389 -25.66192 -24.26317 -22.85428 -22.42193 -22.32595 -20.43362 -20.24200 -19.28114 -18.65092 -18.37810 -17.85123 -17.61938 -17.14373 -16.98023 -16.49047 -16.34669 -15.94202 -15.51012 -15.41096 -15.22050 -15.15666 -14.78404 -14.66014 -14.52563 -14.29641 -13.93385 -13.62296 -13.52138 -13.23763 -13.12496 -12.97163 -12.81185 -12.74506 -12.62956 -12.52900 -12.25692 -12.16383 -12.02533 -11.86744 -11.82706 -11.64150 -11.46985 -11.22154 -10.98700 -10.82809 -10.55851 -10.19061 -9.70411 -9.03763 -7.96156 -5.26149 1.33530 1.43644 1.45038 1.49690 1.55566 1.78696 2.23299 2.54752 2.72254 3.16149 3.37315 3.48052 3.56400 3.62461 3.68614 3.79832 3.88510 3.97793 4.04077 4.13126 4.13814 4.32639 4.35836 4.44638 4.45837 4.53764 4.66229 4.67484 4.68819 4.76042 4.76415 4.83070 4.87316 4.88365 4.98374 5.08763 5.15536 5.16845 5.21975 5.34132 5.44834 5.46745 5.49588 5.55107 6.12089 6.24301 6.25996 6.75289 6.95046 7.07574 7.30378 8.04758 8.29448 9.27656 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018193 B = 0.002558 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.725832 B =10944.342657 C =11752.364641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.101 0.899 4 C -0.127 4.127 5 C 0.517 3.483 6 O -0.611 6.611 7 N -0.704 5.704 8 C 0.128 3.872 9 H 0.135 0.865 10 C 0.490 3.510 11 O -0.576 6.576 12 N -0.598 5.598 13 C 0.092 3.908 14 C -0.157 4.157 15 C 0.061 3.939 16 O -0.398 6.398 17 C 0.105 3.895 18 H 0.016 0.984 19 C 0.162 3.838 20 N -0.741 5.741 21 C -0.249 4.249 22 H 0.078 0.922 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.980 3.020 26 H -0.273 1.273 27 H -0.294 1.294 28 H -0.278 1.278 29 C 0.096 3.904 30 C -0.120 4.120 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.393 0.607 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.092 0.908 43 H 0.032 0.968 44 H 0.035 0.965 45 H 0.372 0.628 46 H 0.251 0.749 47 H 0.077 0.923 48 H 0.110 0.890 49 H 0.066 0.934 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.221 13.117 10.296 33.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.119 0.881 4 C -0.167 4.167 5 C 0.306 3.694 6 O -0.493 6.493 7 N -0.354 5.354 8 C 0.020 3.980 9 H 0.152 0.848 10 C 0.278 3.722 11 O -0.455 6.455 12 N -0.330 5.330 13 C -0.027 4.027 14 C -0.194 4.194 15 C -0.015 4.015 16 O -0.317 6.317 17 C 0.045 3.955 18 H 0.034 0.966 19 C 0.035 3.965 20 N -0.384 5.384 21 C -0.381 4.381 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.808 3.192 26 H -0.199 1.199 27 H -0.220 1.220 28 H -0.204 1.204 29 C -0.029 4.029 30 C -0.158 4.158 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.228 0.772 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.110 0.890 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.204 0.796 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.128 0.872 49 H 0.085 0.915 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -28.822 12.379 10.640 33.124 hybrid contribution 2.051 -0.895 -0.134 2.241 sum -26.772 11.484 10.506 30.968 Atomic orbital electron populations 1.21792 0.91990 1.02665 1.03581 1.21254 0.97957 0.99957 0.90965 0.88122 1.21850 0.88109 1.04455 1.02259 1.20989 0.92057 0.74701 0.81626 1.90753 1.69803 1.51634 1.37120 1.45469 1.13488 1.69327 1.07106 1.21268 0.96587 0.99097 0.81027 0.84779 1.21532 0.79268 0.86636 0.84813 1.90782 1.43143 1.28620 1.82931 1.48002 1.60352 1.20054 1.04575 1.22677 0.98128 0.81657 1.00283 1.22501 0.93694 1.03825 0.99421 1.22438 0.96695 0.86343 0.96004 1.86363 1.88062 1.13988 1.43263 1.21850 0.95355 0.84645 0.93660 0.96631 1.20767 0.84915 0.94454 0.96393 1.42436 1.05879 1.31990 1.58055 1.19650 0.92398 1.05326 1.20681 0.90379 1.25666 0.97869 1.00452 1.03094 1.69841 1.10133 1.32234 1.50024 0.85123 0.77114 0.78155 0.78822 1.19928 1.22020 1.20396 1.22118 0.94486 0.94054 0.92219 1.22079 0.88870 1.02780 1.02076 0.91467 0.90278 0.92585 0.86837 0.87494 0.77229 0.87230 0.86767 0.85789 0.90477 0.94168 0.88966 0.94996 0.94722 0.79621 0.93985 0.90491 0.87190 0.91500 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.23 9.20 71.98 0.66 0.43 16 2 C -0.08 -0.39 2.80 -10.66 -0.03 -0.42 16 3 H 0.10 0.21 8.13 -2.39 -0.02 0.19 16 4 C -0.13 -1.47 5.36 29.71 0.16 -1.31 16 5 C 0.52 11.50 7.71 87.74 0.68 12.18 16 6 O -0.61 -20.09 17.78 -3.04 -0.05 -20.14 16 7 N -0.70 -14.70 4.79 -450.37 -2.16 -16.86 16 8 C 0.13 1.71 2.65 44.36 0.12 1.83 16 9 H 0.14 0.90 6.30 -2.39 -0.02 0.88 16 10 C 0.49 10.85 6.82 87.65 0.60 11.45 16 11 O -0.58 -19.67 15.77 -3.02 -0.05 -19.72 16 12 N -0.60 -10.96 2.18 -817.24 -1.78 -12.74 16 13 C 0.09 0.71 5.02 86.51 0.43 1.14 16 14 C -0.16 -1.79 5.79 30.43 0.18 -1.62 16 15 C 0.06 1.38 6.37 71.50 0.46 1.83 16 16 O -0.40 -13.58 9.38 -117.87 -1.11 -14.69 16 17 C 0.11 3.74 2.68 31.21 0.08 3.82 16 18 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 19 C 0.16 7.03 5.92 86.38 0.51 7.55 16 20 N -0.74 -41.20 5.54 -343.43 -1.90 -43.10 16 21 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 22 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 23 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 24 N -0.97 -62.66 13.06 21.65 0.28 -62.38 16 25 Si 0.98 48.01 29.55 68.60 2.03 50.03 16 26 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 28 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 29 C 0.10 2.44 4.82 87.26 0.42 2.86 16 30 C -0.12 -0.81 4.42 30.68 0.14 -0.67 16 31 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.11 1.17 8.10 -2.38 -0.02 1.15 16 36 H 0.39 10.22 8.37 -92.71 -0.78 9.45 16 37 H 0.11 0.19 7.97 -2.38 -0.02 0.17 16 38 H 0.11 0.20 5.43 -2.39 -0.01 0.18 16 39 H 0.12 0.58 8.14 -2.39 -0.02 0.57 16 40 H 0.08 1.07 8.01 -2.39 -0.02 1.05 16 41 H 0.04 0.93 7.41 -2.39 -0.02 0.92 16 42 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.37 22.36 7.65 -92.71 -0.71 21.66 16 46 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 47 H 0.08 2.23 7.35 -2.39 -0.02 2.21 16 48 H 0.11 2.28 8.11 -2.38 -0.02 2.26 16 49 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 50 H 0.13 0.01 6.95 -2.39 -0.02 -0.01 16 Total: -1.00 -90.12 391.71 0.44 -89.68 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.53 Total: 29.08 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 5.71 Total: 20.84 kcal Atomic # 7 Polarization: -129.52 SS G_CDS: -5.56 Total: -135.08 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -1.21 Total: -54.55 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.03 kcal Total: -90.12 0.44 -89.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200528437.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.502 kcal (2) G-P(sol) polarization free energy of solvation -90.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds