Wall clock time and date at job start Tue Mar 31 2020 23:12:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08999 * 115.54789 * 2 1
4 4 C 1.53074 * 117.49123 * 214.27795 * 2 1 3
5 5 C 1.52990 * 117.49895 * 145.67307 * 2 1 3
6 6 H 1.08997 * 117.50573 * 359.97438 * 5 2 1
7 7 C 1.50707 * 117.49924 * 214.97748 * 5 2 1
8 8 O 1.21275 * 119.99602 * 0.09018 * 7 5 2
9 9 N 1.34778 * 120.00081 * 180.09219 * 7 5 2
10 10 C 1.47501 * 118.75738 * 359.97438 * 9 7 5
11 11 C 1.53576 * 111.02549 * 138.37453 * 10 9 7
12 12 C 1.51535 * 109.58337 * 320.02567 * 11 10 9
13 13 O 1.42151 * 108.76458 * 91.39479 * 12 11 10
14 14 C 1.38012 * 119.43779 * 272.78118 * 13 12 11
15 15 H 1.09002 * 109.47067 * 303.42059 * 14 13 12
16 16 C 1.53002 * 109.46993 * 183.42501 * 14 13 12
17 17 N 1.46903 * 109.46967 * 65.00052 * 16 14 13
18 18 C 1.46896 * 110.99955 * 180.02562 * 17 16 14
19 19 C 1.50700 * 109.46942 * 179.97438 * 18 17 16
20 20 O 1.21293 * 120.00282 * 359.97438 * 19 18 17
21 21 N 1.34777 * 120.00075 * 179.97438 * 19 18 17
22 22 C 1.37104 * 120.00173 * 180.02562 * 21 19 18
23 23 H 1.08002 * 119.99666 * 359.97438 * 22 21 19
24 24 C 1.38945 * 120.00001 * 180.27893 * 22 21 19
25 25 N 1.31414 * 119.99893 * 359.72318 * 24 22 21
26 26 Si 1.86801 * 119.99957 * 179.72309 * 24 22 21
27 27 H 1.48501 * 109.46896 * 89.99808 * 26 24 22
28 28 H 1.48504 * 109.46757 * 209.99794 * 26 24 22
29 29 H 1.48492 * 109.47185 * 329.99590 * 26 24 22
30 30 C 1.45121 * 118.75526 * 180.02562 * 9 7 5
31 31 H 1.08998 * 109.47231 * 274.32027 * 1 2 3
32 32 H 1.08994 * 109.47837 * 34.32944 * 1 2 3
33 33 H 1.09006 * 109.46947 * 154.32595 * 1 2 3
34 34 H 1.09008 * 117.50866 * 145.03426 * 4 2 1
35 35 H 1.08995 * 117.49788 * 359.97438 * 4 2 1
36 36 H 1.08999 * 109.17053 * 17.98260 * 10 9 7
37 37 H 1.08998 * 109.13010 * 258.74653 * 10 9 7
38 38 H 1.09002 * 109.45370 * 199.98723 * 11 10 9
39 39 H 1.09004 * 109.43215 * 80.04681 * 11 10 9
40 40 H 1.09000 * 109.58754 * 331.61125 * 12 11 10
41 41 H 1.09003 * 109.70421 * 211.25422 * 12 11 10
42 42 H 1.08999 * 109.47423 * 305.00319 * 16 14 13
43 43 H 1.08991 * 109.47394 * 184.99694 * 16 14 13
44 44 H 1.00907 * 111.00029 * 303.95634 * 17 16 14
45 45 H 1.08994 * 109.47346 * 60.00149 * 18 17 16
46 46 H 1.08998 * 109.47279 * 299.99821 * 18 17 16
47 47 H 0.97000 * 120.00140 * 0.02562 * 21 19 18
48 48 H 0.97004 * 119.99542 * 180.02562 * 25 24 22
49 49 H 1.09000 * 109.45545 * 149.26575 * 30 9 7
50 50 H 1.09003 * 109.45930 * 29.30896 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 2.0001 0.9834 0.0000
4 6 2.2366 -1.1220 -0.7648
5 6 2.2364 -1.1207 0.7653
6 1 1.6113 -1.8578 1.2691
7 6 3.5293 -0.7806 1.4610
8 8 3.9709 0.3473 1.4024
9 7 4.1947 -1.7300 2.1483
10 6 3.6325 -3.0926 2.2020
11 6 4.7338 -4.1501 2.0369
12 6 5.7243 -3.6920 0.9854
13 8 6.7692 -2.9709 1.6248
14 6 6.6235 -1.6160 1.8430
15 1 6.4296 -1.1141 0.8950
16 6 7.9066 -1.0582 2.4621
17 7 9.0086 -1.1804 1.4984
18 6 10.2598 -0.6541 2.0600
19 6 11.3649 -0.7967 1.0453
20 8 11.1331 -1.2888 -0.0388
21 7 12.6108 -0.3775 1.3425
22 6 13.6161 -0.5067 0.4192
23 1 13.4096 -0.9449 -0.5461
24 6 14.9019 -0.0798 0.7277
25 7 15.1532 0.4529 1.9025
26 14 16.2732 -0.2629 -0.5274
27 1 16.3379 0.9572 -1.3714
28 1 17.5675 -0.4469 0.1770
29 1 16.0043 -1.4447 -1.3855
30 6 5.4368 -1.3728 2.8083
31 1 -0.3633 0.0774 1.0247
32 1 -0.3634 0.8486 -0.5795
33 1 -0.3633 -0.9263 -0.4453
34 1 3.1719 -0.8768 -1.2682
35 1 1.6113 -1.8599 -1.2672
36 1 2.9012 -3.2099 1.4023
37 1 3.1384 -3.2375 3.1627
38 1 4.2867 -5.0947 1.7273
39 1 5.2504 -4.2871 2.9869
40 1 5.2210 -3.0456 0.2664
41 1 6.1399 -4.5579 0.4700
42 1 8.1489 -1.6201 3.3642
43 1 7.7609 -0.0084 2.7162
44 1 9.1217 -2.1370 1.1978
45 1 10.5182 -1.2135 2.9590
46 1 10.1307 0.3985 2.3116
47 1 12.7964 0.0157 2.2096
48 1 16.0507 0.7513 2.1177
49 1 5.5629 -1.9856 3.7009
50 1 5.4078 -0.3206 3.0917
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001201154618.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:12:48
Heat of formation + Delta-G solvation = -84.503619 kcal
Electronic energy + Delta-G solvation = -29760.593731 eV
Core-core repulsion = 25595.852688 eV
Total energy + Delta-G solvation = -4164.741043 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.01363 -39.24884 -38.15899 -37.12245 -36.02096 -35.19336 -33.83237 -32.93111
-31.15757 -30.13204 -29.14048 -27.63440 -26.45975 -25.22628 -23.99462 -22.80252
-21.99519 -21.44441 -21.05933 -19.19535 -19.08742 -17.97205 -17.82770 -17.05356
-16.72458 -16.25392 -15.92485 -15.57613 -15.27866 -14.95516 -14.56486 -14.41961
-14.29187 -14.07027 -13.91153 -13.66085 -13.48505 -13.41535 -13.18937 -12.94850
-12.58077 -12.48981 -12.45377 -11.88495 -11.84955 -11.80418 -11.55081 -11.53695
-11.42339 -11.28644 -10.99215 -10.78418 -10.68898 -10.44121 -10.35194 -10.16484
-10.01539 -9.78801 -9.45154 -8.88739 -8.37229 -7.96180 -7.88845 -6.36087
-3.76590 2.16310 2.55376 3.22121 3.30033 3.36282 3.40718 3.51878
3.98073 3.99070 4.13095 4.30005 4.31918 4.35114 4.39102 4.53963
4.63409 4.73512 4.90893 4.93552 4.98977 5.08661 5.15455 5.17121
5.23167 5.24550 5.28671 5.29859 5.32120 5.33412 5.42160 5.54063
5.55592 5.61339 5.63865 5.70525 5.83161 5.89288 5.91586 5.97828
6.06915 6.25978 6.34288 6.95468 7.30011 7.53082 7.60671 7.81638
7.88143 8.12788 8.68029 9.23920 9.60967 10.13002 10.81823
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.020203 B = 0.001931 C = 0.001875
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1385.632640 B =14496.476305 C =14927.394982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.122 4.122
3 H 0.118 0.882
4 C -0.148 4.148
5 C -0.195 4.195
6 H 0.123 0.877
7 C 0.538 3.462
8 O -0.531 6.531
9 N -0.608 5.608
10 C 0.106 3.894
11 C -0.167 4.167
12 C 0.077 3.923
13 O -0.382 6.382
14 C 0.096 3.904
15 H 0.064 0.936
16 C 0.073 3.927
17 N -0.666 5.666
18 C 0.050 3.950
19 C 0.443 3.557
20 O -0.582 6.582
21 N -0.565 5.565
22 C -0.298 4.298
23 H 0.103 0.897
24 C 0.021 3.979
25 N -0.903 5.903
26 Si 0.930 3.070
27 H -0.278 1.278
28 H -0.284 1.284
29 H -0.270 1.270
30 C 0.081 3.919
31 H 0.061 0.939
32 H 0.065 0.935
33 H 0.057 0.943
34 H 0.101 0.899
35 H 0.105 0.895
36 H 0.086 0.914
37 H 0.067 0.933
38 H 0.087 0.913
39 H 0.081 0.919
40 H 0.051 0.949
41 H 0.092 0.908
42 H 0.036 0.964
43 H 0.086 0.914
44 H 0.356 0.644
45 H 0.043 0.957
46 H 0.086 0.914
47 H 0.392 0.608
48 H 0.271 0.729
49 H 0.083 0.917
50 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.166 -7.515 3.745 31.313
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.140 4.140
3 H 0.136 0.864
4 C -0.185 4.185
5 C -0.216 4.216
6 H 0.141 0.859
7 C 0.326 3.674
8 O -0.407 6.407
9 N -0.341 5.341
10 C -0.017 4.017
11 C -0.205 4.205
12 C 0.001 3.999
13 O -0.301 6.301
14 C 0.036 3.964
15 H 0.082 0.918
16 C -0.057 4.057
17 N -0.299 5.299
18 C -0.082 4.082
19 C 0.228 3.772
20 O -0.466 6.466
21 N -0.202 5.202
22 C -0.427 4.427
23 H 0.120 0.880
24 C -0.180 4.180
25 N -0.544 5.544
26 Si 0.758 3.242
27 H -0.204 1.204
28 H -0.210 1.210
29 H -0.195 1.195
30 C -0.043 4.043
31 H 0.080 0.920
32 H 0.085 0.915
33 H 0.076 0.924
34 H 0.119 0.881
35 H 0.123 0.877
36 H 0.105 0.895
37 H 0.085 0.915
38 H 0.106 0.894
39 H 0.100 0.900
40 H 0.069 0.931
41 H 0.110 0.890
42 H 0.054 0.946
43 H 0.104 0.896
44 H 0.177 0.823
45 H 0.061 0.939
46 H 0.104 0.896
47 H 0.225 0.775
48 H 0.081 0.919
49 H 0.101 0.899
50 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -29.887 -6.697 2.811 30.757
hybrid contribution 0.808 -0.522 0.745 1.217
sum -29.079 -7.219 3.556 30.172
Atomic orbital electron populations
1.21399 0.92150 1.02304 1.02168 1.22410 0.95239 0.95176 1.01223
0.86401 1.23141 1.03349 1.01596 0.90444 1.22351 0.97826 1.05459
0.95978 0.85907 1.19825 0.84746 0.84567 0.78291 1.90725 1.68616
1.20910 1.60428 1.47799 1.23583 1.10161 1.52554 1.22020 0.96247
0.80881 1.02529 1.22501 0.97425 0.98544 1.02052 1.22117 0.88434
0.95800 0.93571 1.86258 1.43695 1.21066 1.79054 1.22043 0.94009
0.82216 0.98159 0.91848 1.21885 0.89800 1.00424 0.93641 1.60059
1.03436 1.28374 1.38052 1.21673 0.89859 1.00953 0.95747 1.19820
0.83612 0.84717 0.89036 1.90522 1.82486 1.48928 1.24659 1.41862
1.06984 1.54423 1.16962 1.19707 0.87272 1.38059 0.97694 0.87953
1.25257 0.98598 0.96998 0.97197 1.69620 1.22405 1.41549 1.20868
0.85853 0.79628 0.78854 0.79912 1.20426 1.20980 1.19464 1.22389
0.83024 1.02940 0.95943 0.91988 0.91549 0.92355 0.88094 0.87674
0.89521 0.91473 0.89437 0.90014 0.93062 0.88990 0.94635 0.89623
0.82342 0.93856 0.89624 0.77462 0.91947 0.89900 0.88758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.65 10.19 37.16 0.38 -0.27 16
2 C -0.12 -0.93 5.92 -90.59 -0.54 -1.47 16
3 H 0.12 1.15 7.67 -51.93 -0.40 0.75 16
4 C -0.15 -1.03 9.88 -26.69 -0.26 -1.29 16
5 C -0.20 -1.49 4.47 -91.77 -0.41 -1.90 16
6 H 0.12 0.65 6.95 -51.93 -0.36 0.29 16
7 C 0.54 5.94 7.41 -10.98 -0.08 5.85 16
8 O -0.53 -8.02 15.69 5.56 0.09 -7.93 16
9 N -0.61 -5.69 2.19 -172.41 -0.38 -6.07 16
10 C 0.11 0.64 5.88 -3.20 -0.02 0.62 16
11 C -0.17 -1.05 5.79 -27.17 -0.16 -1.21 16
12 C 0.08 0.72 6.37 36.42 0.23 0.95 16
13 O -0.38 -4.80 8.98 -26.52 -0.24 -5.04 16
14 C 0.10 1.23 2.88 -25.73 -0.07 1.15 16
15 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
16 C 0.07 1.01 5.39 -3.82 -0.02 0.98 16
17 N -0.67 -11.96 6.13 -115.06 -0.71 -12.66 16
18 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16
19 C 0.44 10.99 7.82 -10.98 -0.09 10.91 16
20 O -0.58 -16.58 15.78 5.55 0.09 -16.49 16
21 N -0.57 -14.87 5.29 -10.96 -0.06 -14.93 16
22 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16
23 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16
24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16
25 N -0.90 -25.12 13.05 55.50 0.72 -24.40 16
26 Si 0.93 21.56 29.55 -169.99 -5.02 16.54 16
27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
29 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
30 C 0.08 0.85 4.87 -3.78 -0.02 0.83 16
31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
33 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16
34 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16
35 H 0.10 0.50 8.05 -51.93 -0.42 0.09 16
36 H 0.09 0.39 5.85 -51.93 -0.30 0.09 16
37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16
39 H 0.08 0.58 8.01 -51.93 -0.42 0.17 16
40 H 0.05 0.50 7.40 -51.93 -0.38 0.12 16
41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16
43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16
44 H 0.36 6.80 7.99 -39.29 -0.31 6.48 16
45 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
46 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16
47 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16
48 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16
49 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16
50 H 0.09 1.09 7.27 -51.93 -0.38 0.71 16
LS Contribution 404.31 15.07 6.09 6.09
Total: -1.00 -34.93 404.31 -9.02 -43.96
By element:
Atomic # 1 Polarization: 21.38 SS G_CDS: -8.29 Total: 13.09 kcal
Atomic # 6 Polarization: 9.18 SS G_CDS: -1.33 Total: 7.85 kcal
Atomic # 7 Polarization: -57.65 SS G_CDS: -0.42 Total: -58.06 kcal
Atomic # 8 Polarization: -29.40 SS G_CDS: -0.06 Total: -29.47 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -34.93 -9.02 -43.96 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001201154618.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.548 kcal
(2) G-P(sol) polarization free energy of solvation -34.931 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.479 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.504 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds