Wall clock time and date at job start Tue Mar 31 2020 23:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 115.54789 * 2 1 4 4 C 1.53074 * 117.49123 * 214.27795 * 2 1 3 5 5 C 1.52990 * 117.49895 * 145.67307 * 2 1 3 6 6 H 1.08997 * 117.50573 * 359.97438 * 5 2 1 7 7 C 1.50707 * 117.49924 * 214.97748 * 5 2 1 8 8 O 1.21275 * 119.99602 * 0.09018 * 7 5 2 9 9 N 1.34778 * 120.00081 * 180.09219 * 7 5 2 10 10 C 1.47501 * 118.75738 * 359.97438 * 9 7 5 11 11 C 1.53576 * 111.02549 * 138.37453 * 10 9 7 12 12 C 1.51535 * 109.58337 * 320.02567 * 11 10 9 13 13 O 1.42151 * 108.76458 * 91.39479 * 12 11 10 14 14 C 1.38012 * 119.43779 * 272.78118 * 13 12 11 15 15 H 1.09002 * 109.47067 * 303.42059 * 14 13 12 16 16 C 1.53002 * 109.46993 * 183.42501 * 14 13 12 17 17 N 1.46903 * 109.46967 * 65.00052 * 16 14 13 18 18 C 1.46896 * 110.99955 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46942 * 179.97438 * 18 17 16 20 20 O 1.21293 * 120.00282 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00075 * 179.97438 * 19 18 17 22 22 C 1.37104 * 120.00173 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99666 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00001 * 180.27893 * 22 21 19 25 25 N 1.31414 * 119.99893 * 359.72318 * 24 22 21 26 26 Si 1.86801 * 119.99957 * 179.72309 * 24 22 21 27 27 H 1.48501 * 109.46896 * 89.99808 * 26 24 22 28 28 H 1.48504 * 109.46757 * 209.99794 * 26 24 22 29 29 H 1.48492 * 109.47185 * 329.99590 * 26 24 22 30 30 C 1.45121 * 118.75526 * 180.02562 * 9 7 5 31 31 H 1.08998 * 109.47231 * 274.32027 * 1 2 3 32 32 H 1.08994 * 109.47837 * 34.32944 * 1 2 3 33 33 H 1.09006 * 109.46947 * 154.32595 * 1 2 3 34 34 H 1.09008 * 117.50866 * 145.03426 * 4 2 1 35 35 H 1.08995 * 117.49788 * 359.97438 * 4 2 1 36 36 H 1.08999 * 109.17053 * 17.98260 * 10 9 7 37 37 H 1.08998 * 109.13010 * 258.74653 * 10 9 7 38 38 H 1.09002 * 109.45370 * 199.98723 * 11 10 9 39 39 H 1.09004 * 109.43215 * 80.04681 * 11 10 9 40 40 H 1.09000 * 109.58754 * 331.61125 * 12 11 10 41 41 H 1.09003 * 109.70421 * 211.25422 * 12 11 10 42 42 H 1.08999 * 109.47423 * 305.00319 * 16 14 13 43 43 H 1.08991 * 109.47394 * 184.99694 * 16 14 13 44 44 H 1.00907 * 111.00029 * 303.95634 * 17 16 14 45 45 H 1.08994 * 109.47346 * 60.00149 * 18 17 16 46 46 H 1.08998 * 109.47279 * 299.99821 * 18 17 16 47 47 H 0.97000 * 120.00140 * 0.02562 * 21 19 18 48 48 H 0.97004 * 119.99542 * 180.02562 * 25 24 22 49 49 H 1.09000 * 109.45545 * 149.26575 * 30 9 7 50 50 H 1.09003 * 109.45930 * 29.30896 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1220 -0.7648 5 6 2.2364 -1.1207 0.7653 6 1 1.6113 -1.8578 1.2691 7 6 3.5293 -0.7806 1.4610 8 8 3.9709 0.3473 1.4024 9 7 4.1947 -1.7300 2.1483 10 6 3.6325 -3.0926 2.2020 11 6 4.7338 -4.1501 2.0369 12 6 5.7243 -3.6920 0.9854 13 8 6.7692 -2.9709 1.6248 14 6 6.6235 -1.6160 1.8430 15 1 6.4296 -1.1141 0.8950 16 6 7.9066 -1.0582 2.4621 17 7 9.0086 -1.1804 1.4984 18 6 10.2598 -0.6541 2.0600 19 6 11.3649 -0.7967 1.0453 20 8 11.1331 -1.2888 -0.0388 21 7 12.6108 -0.3775 1.3425 22 6 13.6161 -0.5067 0.4192 23 1 13.4096 -0.9449 -0.5461 24 6 14.9019 -0.0798 0.7277 25 7 15.1532 0.4529 1.9025 26 14 16.2732 -0.2629 -0.5274 27 1 16.3379 0.9572 -1.3714 28 1 17.5675 -0.4469 0.1770 29 1 16.0043 -1.4447 -1.3855 30 6 5.4368 -1.3728 2.8083 31 1 -0.3633 0.0774 1.0247 32 1 -0.3634 0.8486 -0.5795 33 1 -0.3633 -0.9263 -0.4453 34 1 3.1719 -0.8768 -1.2682 35 1 1.6113 -1.8599 -1.2672 36 1 2.9012 -3.2099 1.4023 37 1 3.1384 -3.2375 3.1627 38 1 4.2867 -5.0947 1.7273 39 1 5.2504 -4.2871 2.9869 40 1 5.2210 -3.0456 0.2664 41 1 6.1399 -4.5579 0.4700 42 1 8.1489 -1.6201 3.3642 43 1 7.7609 -0.0084 2.7162 44 1 9.1217 -2.1370 1.1978 45 1 10.5182 -1.2135 2.9590 46 1 10.1307 0.3985 2.3116 47 1 12.7964 0.0157 2.2096 48 1 16.0507 0.7513 2.1177 49 1 5.5629 -1.9856 3.7009 50 1 5.4078 -0.3206 3.0917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201154618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:48 Heat of formation + Delta-G solvation = -84.503619 kcal Electronic energy + Delta-G solvation = -29760.593731 eV Core-core repulsion = 25595.852688 eV Total energy + Delta-G solvation = -4164.741043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01363 -39.24884 -38.15899 -37.12245 -36.02096 -35.19336 -33.83237 -32.93111 -31.15757 -30.13204 -29.14048 -27.63440 -26.45975 -25.22628 -23.99462 -22.80252 -21.99519 -21.44441 -21.05933 -19.19535 -19.08742 -17.97205 -17.82770 -17.05356 -16.72458 -16.25392 -15.92485 -15.57613 -15.27866 -14.95516 -14.56486 -14.41961 -14.29187 -14.07027 -13.91153 -13.66085 -13.48505 -13.41535 -13.18937 -12.94850 -12.58077 -12.48981 -12.45377 -11.88495 -11.84955 -11.80418 -11.55081 -11.53695 -11.42339 -11.28644 -10.99215 -10.78418 -10.68898 -10.44121 -10.35194 -10.16484 -10.01539 -9.78801 -9.45154 -8.88739 -8.37229 -7.96180 -7.88845 -6.36087 -3.76590 2.16310 2.55376 3.22121 3.30033 3.36282 3.40718 3.51878 3.98073 3.99070 4.13095 4.30005 4.31918 4.35114 4.39102 4.53963 4.63409 4.73512 4.90893 4.93552 4.98977 5.08661 5.15455 5.17121 5.23167 5.24550 5.28671 5.29859 5.32120 5.33412 5.42160 5.54063 5.55592 5.61339 5.63865 5.70525 5.83161 5.89288 5.91586 5.97828 6.06915 6.25978 6.34288 6.95468 7.30011 7.53082 7.60671 7.81638 7.88143 8.12788 8.68029 9.23920 9.60967 10.13002 10.81823 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.001931 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.632640 B =14496.476305 C =14927.394982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 H 0.118 0.882 4 C -0.148 4.148 5 C -0.195 4.195 6 H 0.123 0.877 7 C 0.538 3.462 8 O -0.531 6.531 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.167 4.167 12 C 0.077 3.923 13 O -0.382 6.382 14 C 0.096 3.904 15 H 0.064 0.936 16 C 0.073 3.927 17 N -0.666 5.666 18 C 0.050 3.950 19 C 0.443 3.557 20 O -0.582 6.582 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 C 0.081 3.919 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.036 0.964 43 H 0.086 0.914 44 H 0.356 0.644 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.083 0.917 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.166 -7.515 3.745 31.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 H 0.136 0.864 4 C -0.185 4.185 5 C -0.216 4.216 6 H 0.141 0.859 7 C 0.326 3.674 8 O -0.407 6.407 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.205 4.205 12 C 0.001 3.999 13 O -0.301 6.301 14 C 0.036 3.964 15 H 0.082 0.918 16 C -0.057 4.057 17 N -0.299 5.299 18 C -0.082 4.082 19 C 0.228 3.772 20 O -0.466 6.466 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.195 1.195 30 C -0.043 4.043 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.177 0.823 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.101 0.899 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -29.887 -6.697 2.811 30.757 hybrid contribution 0.808 -0.522 0.745 1.217 sum -29.079 -7.219 3.556 30.172 Atomic orbital electron populations 1.21399 0.92150 1.02304 1.02168 1.22410 0.95239 0.95176 1.01223 0.86401 1.23141 1.03349 1.01596 0.90444 1.22351 0.97826 1.05459 0.95978 0.85907 1.19825 0.84746 0.84567 0.78291 1.90725 1.68616 1.20910 1.60428 1.47799 1.23583 1.10161 1.52554 1.22020 0.96247 0.80881 1.02529 1.22501 0.97425 0.98544 1.02052 1.22117 0.88434 0.95800 0.93571 1.86258 1.43695 1.21066 1.79054 1.22043 0.94009 0.82216 0.98159 0.91848 1.21885 0.89800 1.00424 0.93641 1.60059 1.03436 1.28374 1.38052 1.21673 0.89859 1.00953 0.95747 1.19820 0.83612 0.84717 0.89036 1.90522 1.82486 1.48928 1.24659 1.41862 1.06984 1.54423 1.16962 1.19707 0.87272 1.38059 0.97694 0.87953 1.25257 0.98598 0.96998 0.97197 1.69620 1.22405 1.41549 1.20868 0.85853 0.79628 0.78854 0.79912 1.20426 1.20980 1.19464 1.22389 0.83024 1.02940 0.95943 0.91988 0.91549 0.92355 0.88094 0.87674 0.89521 0.91473 0.89437 0.90014 0.93062 0.88990 0.94635 0.89623 0.82342 0.93856 0.89624 0.77462 0.91947 0.89900 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.19 37.16 0.38 -0.27 16 2 C -0.12 -0.93 5.92 -90.59 -0.54 -1.47 16 3 H 0.12 1.15 7.67 -51.93 -0.40 0.75 16 4 C -0.15 -1.03 9.88 -26.69 -0.26 -1.29 16 5 C -0.20 -1.49 4.47 -91.77 -0.41 -1.90 16 6 H 0.12 0.65 6.95 -51.93 -0.36 0.29 16 7 C 0.54 5.94 7.41 -10.98 -0.08 5.85 16 8 O -0.53 -8.02 15.69 5.56 0.09 -7.93 16 9 N -0.61 -5.69 2.19 -172.41 -0.38 -6.07 16 10 C 0.11 0.64 5.88 -3.20 -0.02 0.62 16 11 C -0.17 -1.05 5.79 -27.17 -0.16 -1.21 16 12 C 0.08 0.72 6.37 36.42 0.23 0.95 16 13 O -0.38 -4.80 8.98 -26.52 -0.24 -5.04 16 14 C 0.10 1.23 2.88 -25.73 -0.07 1.15 16 15 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 16 C 0.07 1.01 5.39 -3.82 -0.02 0.98 16 17 N -0.67 -11.96 6.13 -115.06 -0.71 -12.66 16 18 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 19 C 0.44 10.99 7.82 -10.98 -0.09 10.91 16 20 O -0.58 -16.58 15.78 5.55 0.09 -16.49 16 21 N -0.57 -14.87 5.29 -10.96 -0.06 -14.93 16 22 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 23 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -25.12 13.05 55.50 0.72 -24.40 16 26 Si 0.93 21.56 29.55 -169.99 -5.02 16.54 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 30 C 0.08 0.85 4.87 -3.78 -0.02 0.83 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 34 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.10 0.50 8.05 -51.93 -0.42 0.09 16 36 H 0.09 0.39 5.85 -51.93 -0.30 0.09 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.58 8.01 -51.93 -0.42 0.17 16 40 H 0.05 0.50 7.40 -51.93 -0.38 0.12 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.36 6.80 7.99 -39.29 -0.31 6.48 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 48 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 50 H 0.09 1.09 7.27 -51.93 -0.38 0.71 16 LS Contribution 404.31 15.07 6.09 6.09 Total: -1.00 -34.93 404.31 -9.02 -43.96 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -8.29 Total: 13.09 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -1.33 Total: 7.85 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.42 Total: -58.06 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.06 Total: -29.47 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.93 -9.02 -43.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201154618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.548 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds