Wall clock time and date at job start Tue Mar 31 2020 23:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 115.54789 * 2 1 4 4 C 1.53074 * 117.49123 * 214.27795 * 2 1 3 5 5 C 1.52990 * 117.49895 * 145.67307 * 2 1 3 6 6 H 1.08997 * 117.50573 * 359.97438 * 5 2 1 7 7 C 1.50707 * 117.49924 * 214.97748 * 5 2 1 8 8 O 1.21275 * 119.99602 * 0.09018 * 7 5 2 9 9 N 1.34778 * 120.00081 * 180.09219 * 7 5 2 10 10 C 1.47501 * 118.75738 * 359.97438 * 9 7 5 11 11 C 1.53576 * 111.02549 * 138.37453 * 10 9 7 12 12 C 1.51535 * 109.58337 * 320.02567 * 11 10 9 13 13 O 1.42151 * 108.76458 * 91.39479 * 12 11 10 14 14 C 1.38012 * 119.43779 * 272.78118 * 13 12 11 15 15 H 1.09002 * 109.47067 * 303.42059 * 14 13 12 16 16 C 1.53002 * 109.46993 * 183.42501 * 14 13 12 17 17 N 1.46903 * 109.46967 * 65.00052 * 16 14 13 18 18 C 1.46896 * 110.99955 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46942 * 179.97438 * 18 17 16 20 20 O 1.21293 * 120.00282 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00075 * 179.97438 * 19 18 17 22 22 C 1.37104 * 120.00173 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99666 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00001 * 180.27893 * 22 21 19 25 25 N 1.31414 * 119.99893 * 359.72318 * 24 22 21 26 26 Si 1.86801 * 119.99957 * 179.72309 * 24 22 21 27 27 H 1.48501 * 109.46896 * 89.99808 * 26 24 22 28 28 H 1.48504 * 109.46757 * 209.99794 * 26 24 22 29 29 H 1.48492 * 109.47185 * 329.99590 * 26 24 22 30 30 C 1.45121 * 118.75526 * 180.02562 * 9 7 5 31 31 H 1.08998 * 109.47231 * 274.32027 * 1 2 3 32 32 H 1.08994 * 109.47837 * 34.32944 * 1 2 3 33 33 H 1.09006 * 109.46947 * 154.32595 * 1 2 3 34 34 H 1.09008 * 117.50866 * 145.03426 * 4 2 1 35 35 H 1.08995 * 117.49788 * 359.97438 * 4 2 1 36 36 H 1.08999 * 109.17053 * 17.98260 * 10 9 7 37 37 H 1.08998 * 109.13010 * 258.74653 * 10 9 7 38 38 H 1.09002 * 109.45370 * 199.98723 * 11 10 9 39 39 H 1.09004 * 109.43215 * 80.04681 * 11 10 9 40 40 H 1.09000 * 109.58754 * 331.61125 * 12 11 10 41 41 H 1.09003 * 109.70421 * 211.25422 * 12 11 10 42 42 H 1.08999 * 109.47423 * 305.00319 * 16 14 13 43 43 H 1.08991 * 109.47394 * 184.99694 * 16 14 13 44 44 H 1.00907 * 111.00029 * 303.95634 * 17 16 14 45 45 H 1.08994 * 109.47346 * 60.00149 * 18 17 16 46 46 H 1.08998 * 109.47279 * 299.99821 * 18 17 16 47 47 H 0.97000 * 120.00140 * 0.02562 * 21 19 18 48 48 H 0.97004 * 119.99542 * 180.02562 * 25 24 22 49 49 H 1.09000 * 109.45545 * 149.26575 * 30 9 7 50 50 H 1.09003 * 109.45930 * 29.30896 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1220 -0.7648 5 6 2.2364 -1.1207 0.7653 6 1 1.6113 -1.8578 1.2691 7 6 3.5293 -0.7806 1.4610 8 8 3.9709 0.3473 1.4024 9 7 4.1947 -1.7300 2.1483 10 6 3.6325 -3.0926 2.2020 11 6 4.7338 -4.1501 2.0369 12 6 5.7243 -3.6920 0.9854 13 8 6.7692 -2.9709 1.6248 14 6 6.6235 -1.6160 1.8430 15 1 6.4296 -1.1141 0.8950 16 6 7.9066 -1.0582 2.4621 17 7 9.0086 -1.1804 1.4984 18 6 10.2598 -0.6541 2.0600 19 6 11.3649 -0.7967 1.0453 20 8 11.1331 -1.2888 -0.0388 21 7 12.6108 -0.3775 1.3425 22 6 13.6161 -0.5067 0.4192 23 1 13.4096 -0.9449 -0.5461 24 6 14.9019 -0.0798 0.7277 25 7 15.1532 0.4529 1.9025 26 14 16.2732 -0.2629 -0.5274 27 1 16.3379 0.9572 -1.3714 28 1 17.5675 -0.4469 0.1770 29 1 16.0043 -1.4447 -1.3855 30 6 5.4368 -1.3728 2.8083 31 1 -0.3633 0.0774 1.0247 32 1 -0.3634 0.8486 -0.5795 33 1 -0.3633 -0.9263 -0.4453 34 1 3.1719 -0.8768 -1.2682 35 1 1.6113 -1.8599 -1.2672 36 1 2.9012 -3.2099 1.4023 37 1 3.1384 -3.2375 3.1627 38 1 4.2867 -5.0947 1.7273 39 1 5.2504 -4.2871 2.9869 40 1 5.2210 -3.0456 0.2664 41 1 6.1399 -4.5579 0.4700 42 1 8.1489 -1.6201 3.3642 43 1 7.7609 -0.0084 2.7162 44 1 9.1217 -2.1370 1.1978 45 1 10.5182 -1.2135 2.9590 46 1 10.1307 0.3985 2.3116 47 1 12.7964 0.0157 2.2096 48 1 16.0507 0.7513 2.1177 49 1 5.5629 -1.9856 3.7009 50 1 5.4078 -0.3206 3.0917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201154618.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:47 Heat of formation + Delta-G solvation = -110.000164 kcal Electronic energy + Delta-G solvation = -29761.699344 eV Core-core repulsion = 25595.852688 eV Total energy + Delta-G solvation = -4165.846656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81654 -40.28129 -39.94569 -37.80844 -37.07275 -36.36203 -35.83831 -33.88000 -33.26042 -31.03875 -29.82330 -28.70229 -27.53598 -26.55504 -25.36285 -23.83835 -22.75030 -22.31438 -21.67008 -21.10718 -19.93581 -19.80895 -18.70376 -18.17522 -17.78422 -17.38926 -17.07781 -16.81241 -16.39699 -16.31221 -15.94279 -15.87208 -15.15288 -15.13893 -15.02038 -14.76234 -14.68011 -14.33417 -14.15824 -13.80827 -13.62727 -13.50737 -13.38526 -13.15070 -13.04646 -12.97938 -12.78722 -12.71946 -12.43169 -12.36581 -12.30163 -12.12363 -12.07340 -11.57957 -11.52545 -11.37277 -11.00158 -10.83809 -10.62251 -10.38536 -10.03396 -9.69176 -9.36622 -8.47785 -5.96920 1.36519 1.37337 1.40702 1.54026 1.84615 2.02764 2.28465 2.64160 2.80183 2.88094 3.18966 3.37449 3.47088 3.73433 3.78356 3.81526 3.88966 3.95520 4.02249 4.09903 4.18010 4.26096 4.30409 4.37319 4.40226 4.45737 4.46851 4.52888 4.62799 4.68189 4.73190 4.73832 4.80524 4.83259 4.93007 4.94327 5.01340 5.09665 5.15812 5.20816 5.39476 5.39878 5.51718 5.85045 6.06981 6.22050 6.35717 6.58639 6.63285 7.07588 7.10809 7.53810 8.09495 8.69653 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.001931 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.632640 B =14496.476305 C =14927.394982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.132 4.132 3 H 0.085 0.915 4 C -0.140 4.140 5 C -0.191 4.191 6 H 0.158 0.842 7 C 0.527 3.473 8 O -0.585 6.585 9 N -0.605 5.605 10 C 0.100 3.900 11 C -0.156 4.156 12 C 0.067 3.933 13 O -0.400 6.400 14 C 0.107 3.893 15 H 0.025 0.975 16 C 0.074 3.926 17 N -0.684 5.684 18 C 0.065 3.935 19 C 0.437 3.563 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.336 4.336 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.919 5.919 26 Si 0.995 3.005 27 H -0.271 1.271 28 H -0.268 1.268 29 H -0.273 1.273 30 C 0.088 3.912 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.348 0.652 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.105 0.895 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.833 -9.242 4.782 33.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.151 4.151 3 H 0.104 0.896 4 C -0.177 4.177 5 C -0.211 4.211 6 H 0.175 0.825 7 C 0.317 3.683 8 O -0.465 6.465 9 N -0.337 5.337 10 C -0.021 4.021 11 C -0.194 4.194 12 C -0.008 4.008 13 O -0.319 6.319 14 C 0.047 3.953 15 H 0.043 0.957 16 C -0.055 4.055 17 N -0.317 5.317 18 C -0.067 4.067 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.819 3.181 27 H -0.197 1.197 28 H -0.193 1.193 29 H -0.198 1.198 30 C -0.036 4.036 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.155 0.845 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.166 0.834 45 H 0.088 0.912 46 H 0.122 0.878 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.123 0.877 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -31.579 -8.445 3.892 32.920 hybrid contribution 1.324 -0.006 0.407 1.386 sum -30.255 -8.451 4.299 31.706 Atomic orbital electron populations 1.21382 0.89874 1.03396 1.02678 1.22420 0.96854 0.93921 1.01898 0.89632 1.23192 1.02654 1.01874 0.89996 1.22428 0.96397 1.06134 0.96186 0.82496 1.20520 0.85751 0.84070 0.77998 1.90696 1.70186 1.23253 1.62395 1.47946 1.22794 1.11427 1.51501 1.22342 0.96460 0.78591 1.04702 1.22430 0.96604 0.99792 1.00614 1.22370 0.88585 0.95372 0.94498 1.86219 1.45574 1.20647 1.79476 1.21785 0.94416 0.82229 0.96903 0.95707 1.21967 0.88791 1.01305 0.93467 1.60045 1.03899 1.27811 1.39945 1.21544 0.88200 1.02591 0.94407 1.20855 0.84252 0.82925 0.89528 1.90486 1.83252 1.50477 1.26907 1.41918 1.07319 1.54821 1.16831 1.19679 0.88914 1.40182 0.97768 0.90413 1.26075 1.00204 0.95890 0.99158 1.69679 1.23368 1.41090 1.21888 0.84898 0.76916 0.78730 0.77585 1.19676 1.19287 1.19783 1.22215 0.82814 1.02593 0.96000 0.91581 0.91491 0.90394 0.90523 0.84500 0.87424 0.89129 0.86356 0.90389 0.94137 0.88334 0.92653 0.89042 0.83351 0.91226 0.87784 0.76893 0.91235 0.87707 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.19 71.98 0.73 -0.27 16 2 C -0.13 -1.98 5.92 -10.77 -0.06 -2.04 16 3 H 0.09 1.84 7.67 -2.39 -0.02 1.82 16 4 C -0.14 -1.80 9.88 30.62 0.30 -1.50 16 5 C -0.19 -2.64 4.47 -11.54 -0.05 -2.69 16 6 H 0.16 1.06 6.95 -2.39 -0.02 1.05 16 7 C 0.53 11.71 7.41 87.66 0.65 12.36 16 8 O -0.59 -18.90 15.69 -3.01 -0.05 -18.95 16 9 N -0.61 -10.72 2.19 -817.79 -1.79 -12.51 16 10 C 0.10 0.88 5.88 86.38 0.51 1.39 16 11 C -0.16 -1.51 5.79 30.31 0.18 -1.34 16 12 C 0.07 1.19 6.37 71.50 0.46 1.65 16 13 O -0.40 -10.00 8.98 -117.83 -1.06 -11.06 16 14 C 0.11 2.80 2.88 31.24 0.09 2.89 16 15 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 16 C 0.07 2.03 5.39 86.30 0.46 2.50 16 17 N -0.68 -24.93 6.13 -517.95 -3.17 -28.10 16 18 C 0.06 2.44 6.17 85.56 0.53 2.96 16 19 C 0.44 22.21 7.82 87.66 0.69 22.89 16 20 O -0.62 -36.95 15.78 -3.07 -0.05 -36.99 16 21 N -0.57 -30.72 5.29 -306.98 -1.62 -32.35 16 22 C -0.34 -19.80 9.68 84.04 0.81 -18.98 16 23 H 0.08 4.89 7.16 -2.91 -0.02 4.86 16 24 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 25 N -0.92 -50.77 13.05 21.66 0.28 -50.48 16 26 Si 1.00 44.08 29.55 68.60 2.03 46.10 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 30 C 0.09 1.82 4.87 87.29 0.43 2.25 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.38 7.90 -2.38 -0.02 0.37 16 34 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.14 0.89 8.05 -2.39 -0.02 0.87 16 36 H 0.11 0.53 5.85 -2.39 -0.01 0.52 16 37 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16 38 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.08 0.87 8.01 -2.39 -0.02 0.85 16 40 H 0.04 0.79 7.40 -2.39 -0.02 0.77 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.35 13.61 7.99 -89.69 -0.72 12.89 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 47 H 0.40 20.14 7.90 -92.71 -0.73 19.41 16 48 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 49 H 0.10 1.70 8.11 -2.39 -0.02 1.68 16 50 H 0.08 1.89 7.27 -2.39 -0.02 1.88 16 Total: -1.00 -80.03 404.31 0.26 -79.77 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -0.49 Total: 42.78 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 6.18 Total: 21.79 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -6.30 Total: -123.44 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -1.15 Total: -67.00 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -80.03 0.26 -79.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201154618.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.232 kcal (2) G-P(sol) polarization free energy of solvation -80.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds