Wall clock time and date at job start Tue Mar 31 2020 23:12:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08999 * 115.54789 * 2 1
4 4 C 1.53074 * 117.49123 * 214.27795 * 2 1 3
5 5 C 1.52990 * 117.49895 * 145.67307 * 2 1 3
6 6 H 1.08997 * 117.50573 * 359.97438 * 5 2 1
7 7 C 1.50707 * 117.49924 * 214.97748 * 5 2 1
8 8 O 1.21275 * 119.99602 * 0.09018 * 7 5 2
9 9 N 1.34778 * 120.00081 * 180.09219 * 7 5 2
10 10 C 1.47501 * 118.75738 * 359.97438 * 9 7 5
11 11 C 1.53576 * 111.02549 * 138.37453 * 10 9 7
12 12 C 1.51535 * 109.58337 * 320.02567 * 11 10 9
13 13 O 1.42151 * 108.76458 * 91.39479 * 12 11 10
14 14 C 1.38012 * 119.43779 * 272.78118 * 13 12 11
15 15 H 1.09002 * 109.47067 * 303.42059 * 14 13 12
16 16 C 1.53002 * 109.46993 * 183.42501 * 14 13 12
17 17 N 1.46903 * 109.46967 * 65.00052 * 16 14 13
18 18 C 1.46896 * 110.99955 * 180.02562 * 17 16 14
19 19 C 1.50700 * 109.46942 * 179.97438 * 18 17 16
20 20 O 1.21293 * 120.00282 * 359.97438 * 19 18 17
21 21 N 1.34777 * 120.00075 * 179.97438 * 19 18 17
22 22 C 1.37104 * 120.00173 * 180.02562 * 21 19 18
23 23 H 1.08002 * 119.99666 * 359.97438 * 22 21 19
24 24 C 1.38945 * 120.00001 * 180.27893 * 22 21 19
25 25 N 1.31414 * 119.99893 * 359.72318 * 24 22 21
26 26 Si 1.86801 * 119.99957 * 179.72309 * 24 22 21
27 27 H 1.48501 * 109.46896 * 89.99808 * 26 24 22
28 28 H 1.48504 * 109.46757 * 209.99794 * 26 24 22
29 29 H 1.48492 * 109.47185 * 329.99590 * 26 24 22
30 30 C 1.45121 * 118.75526 * 180.02562 * 9 7 5
31 31 H 1.08998 * 109.47231 * 274.32027 * 1 2 3
32 32 H 1.08994 * 109.47837 * 34.32944 * 1 2 3
33 33 H 1.09006 * 109.46947 * 154.32595 * 1 2 3
34 34 H 1.09008 * 117.50866 * 145.03426 * 4 2 1
35 35 H 1.08995 * 117.49788 * 359.97438 * 4 2 1
36 36 H 1.08999 * 109.17053 * 17.98260 * 10 9 7
37 37 H 1.08998 * 109.13010 * 258.74653 * 10 9 7
38 38 H 1.09002 * 109.45370 * 199.98723 * 11 10 9
39 39 H 1.09004 * 109.43215 * 80.04681 * 11 10 9
40 40 H 1.09000 * 109.58754 * 331.61125 * 12 11 10
41 41 H 1.09003 * 109.70421 * 211.25422 * 12 11 10
42 42 H 1.08999 * 109.47423 * 305.00319 * 16 14 13
43 43 H 1.08991 * 109.47394 * 184.99694 * 16 14 13
44 44 H 1.00907 * 111.00029 * 303.95634 * 17 16 14
45 45 H 1.08994 * 109.47346 * 60.00149 * 18 17 16
46 46 H 1.08998 * 109.47279 * 299.99821 * 18 17 16
47 47 H 0.97000 * 120.00140 * 0.02562 * 21 19 18
48 48 H 0.97004 * 119.99542 * 180.02562 * 25 24 22
49 49 H 1.09000 * 109.45545 * 149.26575 * 30 9 7
50 50 H 1.09003 * 109.45930 * 29.30896 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 2.0001 0.9834 0.0000
4 6 2.2366 -1.1220 -0.7648
5 6 2.2364 -1.1207 0.7653
6 1 1.6113 -1.8578 1.2691
7 6 3.5293 -0.7806 1.4610
8 8 3.9709 0.3473 1.4024
9 7 4.1947 -1.7300 2.1483
10 6 3.6325 -3.0926 2.2020
11 6 4.7338 -4.1501 2.0369
12 6 5.7243 -3.6920 0.9854
13 8 6.7692 -2.9709 1.6248
14 6 6.6235 -1.6160 1.8430
15 1 6.4296 -1.1141 0.8950
16 6 7.9066 -1.0582 2.4621
17 7 9.0086 -1.1804 1.4984
18 6 10.2598 -0.6541 2.0600
19 6 11.3649 -0.7967 1.0453
20 8 11.1331 -1.2888 -0.0388
21 7 12.6108 -0.3775 1.3425
22 6 13.6161 -0.5067 0.4192
23 1 13.4096 -0.9449 -0.5461
24 6 14.9019 -0.0798 0.7277
25 7 15.1532 0.4529 1.9025
26 14 16.2732 -0.2629 -0.5274
27 1 16.3379 0.9572 -1.3714
28 1 17.5675 -0.4469 0.1770
29 1 16.0043 -1.4447 -1.3855
30 6 5.4368 -1.3728 2.8083
31 1 -0.3633 0.0774 1.0247
32 1 -0.3634 0.8486 -0.5795
33 1 -0.3633 -0.9263 -0.4453
34 1 3.1719 -0.8768 -1.2682
35 1 1.6113 -1.8599 -1.2672
36 1 2.9012 -3.2099 1.4023
37 1 3.1384 -3.2375 3.1627
38 1 4.2867 -5.0947 1.7273
39 1 5.2504 -4.2871 2.9869
40 1 5.2210 -3.0456 0.2664
41 1 6.1399 -4.5579 0.4700
42 1 8.1489 -1.6201 3.3642
43 1 7.7609 -0.0084 2.7162
44 1 9.1217 -2.1370 1.1978
45 1 10.5182 -1.2135 2.9590
46 1 10.1307 0.3985 2.3116
47 1 12.7964 0.0157 2.2096
48 1 16.0507 0.7513 2.1177
49 1 5.5629 -1.9856 3.7009
50 1 5.4078 -0.3206 3.0917
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001201154618.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:12:47
Heat of formation + Delta-G solvation = -110.000164 kcal
Electronic energy + Delta-G solvation = -29761.699344 eV
Core-core repulsion = 25595.852688 eV
Total energy + Delta-G solvation = -4165.846656 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.81654 -40.28129 -39.94569 -37.80844 -37.07275 -36.36203 -35.83831 -33.88000
-33.26042 -31.03875 -29.82330 -28.70229 -27.53598 -26.55504 -25.36285 -23.83835
-22.75030 -22.31438 -21.67008 -21.10718 -19.93581 -19.80895 -18.70376 -18.17522
-17.78422 -17.38926 -17.07781 -16.81241 -16.39699 -16.31221 -15.94279 -15.87208
-15.15288 -15.13893 -15.02038 -14.76234 -14.68011 -14.33417 -14.15824 -13.80827
-13.62727 -13.50737 -13.38526 -13.15070 -13.04646 -12.97938 -12.78722 -12.71946
-12.43169 -12.36581 -12.30163 -12.12363 -12.07340 -11.57957 -11.52545 -11.37277
-11.00158 -10.83809 -10.62251 -10.38536 -10.03396 -9.69176 -9.36622 -8.47785
-5.96920 1.36519 1.37337 1.40702 1.54026 1.84615 2.02764 2.28465
2.64160 2.80183 2.88094 3.18966 3.37449 3.47088 3.73433 3.78356
3.81526 3.88966 3.95520 4.02249 4.09903 4.18010 4.26096 4.30409
4.37319 4.40226 4.45737 4.46851 4.52888 4.62799 4.68189 4.73190
4.73832 4.80524 4.83259 4.93007 4.94327 5.01340 5.09665 5.15812
5.20816 5.39476 5.39878 5.51718 5.85045 6.06981 6.22050 6.35717
6.58639 6.63285 7.07588 7.10809 7.53810 8.09495 8.69653
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.020203 B = 0.001931 C = 0.001875
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1385.632640 B =14496.476305 C =14927.394982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.132 4.132
3 H 0.085 0.915
4 C -0.140 4.140
5 C -0.191 4.191
6 H 0.158 0.842
7 C 0.527 3.473
8 O -0.585 6.585
9 N -0.605 5.605
10 C 0.100 3.900
11 C -0.156 4.156
12 C 0.067 3.933
13 O -0.400 6.400
14 C 0.107 3.893
15 H 0.025 0.975
16 C 0.074 3.926
17 N -0.684 5.684
18 C 0.065 3.935
19 C 0.437 3.563
20 O -0.625 6.625
21 N -0.572 5.572
22 C -0.336 4.336
23 H 0.078 0.922
24 C -0.014 4.014
25 N -0.919 5.919
26 Si 0.995 3.005
27 H -0.271 1.271
28 H -0.268 1.268
29 H -0.273 1.273
30 C 0.088 3.912
31 H 0.065 0.935
32 H 0.066 0.934
33 H 0.077 0.923
34 H 0.076 0.924
35 H 0.137 0.863
36 H 0.108 0.892
37 H 0.091 0.909
38 H 0.118 0.882
39 H 0.077 0.923
40 H 0.040 0.960
41 H 0.099 0.901
42 H 0.055 0.945
43 H 0.091 0.909
44 H 0.348 0.652
45 H 0.070 0.930
46 H 0.104 0.896
47 H 0.397 0.603
48 H 0.278 0.722
49 H 0.105 0.895
50 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -31.833 -9.242 4.782 33.491
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.151 4.151
3 H 0.104 0.896
4 C -0.177 4.177
5 C -0.211 4.211
6 H 0.175 0.825
7 C 0.317 3.683
8 O -0.465 6.465
9 N -0.337 5.337
10 C -0.021 4.021
11 C -0.194 4.194
12 C -0.008 4.008
13 O -0.319 6.319
14 C 0.047 3.953
15 H 0.043 0.957
16 C -0.055 4.055
17 N -0.317 5.317
18 C -0.067 4.067
19 C 0.224 3.776
20 O -0.511 6.511
21 N -0.209 5.209
22 C -0.465 4.465
23 H 0.096 0.904
24 C -0.213 4.213
25 N -0.560 5.560
26 Si 0.819 3.181
27 H -0.197 1.197
28 H -0.193 1.193
29 H -0.198 1.198
30 C -0.036 4.036
31 H 0.084 0.916
32 H 0.085 0.915
33 H 0.096 0.904
34 H 0.095 0.905
35 H 0.155 0.845
36 H 0.126 0.874
37 H 0.109 0.891
38 H 0.136 0.864
39 H 0.096 0.904
40 H 0.059 0.941
41 H 0.117 0.883
42 H 0.073 0.927
43 H 0.110 0.890
44 H 0.166 0.834
45 H 0.088 0.912
46 H 0.122 0.878
47 H 0.231 0.769
48 H 0.088 0.912
49 H 0.123 0.877
50 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -31.579 -8.445 3.892 32.920
hybrid contribution 1.324 -0.006 0.407 1.386
sum -30.255 -8.451 4.299 31.706
Atomic orbital electron populations
1.21382 0.89874 1.03396 1.02678 1.22420 0.96854 0.93921 1.01898
0.89632 1.23192 1.02654 1.01874 0.89996 1.22428 0.96397 1.06134
0.96186 0.82496 1.20520 0.85751 0.84070 0.77998 1.90696 1.70186
1.23253 1.62395 1.47946 1.22794 1.11427 1.51501 1.22342 0.96460
0.78591 1.04702 1.22430 0.96604 0.99792 1.00614 1.22370 0.88585
0.95372 0.94498 1.86219 1.45574 1.20647 1.79476 1.21785 0.94416
0.82229 0.96903 0.95707 1.21967 0.88791 1.01305 0.93467 1.60045
1.03899 1.27811 1.39945 1.21544 0.88200 1.02591 0.94407 1.20855
0.84252 0.82925 0.89528 1.90486 1.83252 1.50477 1.26907 1.41918
1.07319 1.54821 1.16831 1.19679 0.88914 1.40182 0.97768 0.90413
1.26075 1.00204 0.95890 0.99158 1.69679 1.23368 1.41090 1.21888
0.84898 0.76916 0.78730 0.77585 1.19676 1.19287 1.19783 1.22215
0.82814 1.02593 0.96000 0.91581 0.91491 0.90394 0.90523 0.84500
0.87424 0.89129 0.86356 0.90389 0.94137 0.88334 0.92653 0.89042
0.83351 0.91226 0.87784 0.76893 0.91235 0.87707 0.90238
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.00 10.19 71.98 0.73 -0.27 16
2 C -0.13 -1.98 5.92 -10.77 -0.06 -2.04 16
3 H 0.09 1.84 7.67 -2.39 -0.02 1.82 16
4 C -0.14 -1.80 9.88 30.62 0.30 -1.50 16
5 C -0.19 -2.64 4.47 -11.54 -0.05 -2.69 16
6 H 0.16 1.06 6.95 -2.39 -0.02 1.05 16
7 C 0.53 11.71 7.41 87.66 0.65 12.36 16
8 O -0.59 -18.90 15.69 -3.01 -0.05 -18.95 16
9 N -0.61 -10.72 2.19 -817.79 -1.79 -12.51 16
10 C 0.10 0.88 5.88 86.38 0.51 1.39 16
11 C -0.16 -1.51 5.79 30.31 0.18 -1.34 16
12 C 0.07 1.19 6.37 71.50 0.46 1.65 16
13 O -0.40 -10.00 8.98 -117.83 -1.06 -11.06 16
14 C 0.11 2.80 2.88 31.24 0.09 2.89 16
15 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16
16 C 0.07 2.03 5.39 86.30 0.46 2.50 16
17 N -0.68 -24.93 6.13 -517.95 -3.17 -28.10 16
18 C 0.06 2.44 6.17 85.56 0.53 2.96 16
19 C 0.44 22.21 7.82 87.66 0.69 22.89 16
20 O -0.62 -36.95 15.78 -3.07 -0.05 -36.99 16
21 N -0.57 -30.72 5.29 -306.98 -1.62 -32.35 16
22 C -0.34 -19.80 9.68 84.04 0.81 -18.98 16
23 H 0.08 4.89 7.16 -2.91 -0.02 4.86 16
24 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16
25 N -0.92 -50.77 13.05 21.66 0.28 -50.48 16
26 Si 1.00 44.08 29.55 68.60 2.03 46.10 16
27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16
29 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16
30 C 0.09 1.82 4.87 87.29 0.43 2.25 16
31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16
32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16
33 H 0.08 0.38 7.90 -2.38 -0.02 0.37 16
34 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16
35 H 0.14 0.89 8.05 -2.39 -0.02 0.87 16
36 H 0.11 0.53 5.85 -2.39 -0.01 0.52 16
37 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16
38 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16
39 H 0.08 0.87 8.01 -2.39 -0.02 0.85 16
40 H 0.04 0.79 7.40 -2.39 -0.02 0.77 16
41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16
42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16
43 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16
44 H 0.35 13.61 7.99 -89.69 -0.72 12.89 16
45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
46 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16
47 H 0.40 20.14 7.90 -92.71 -0.73 19.41 16
48 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16
49 H 0.10 1.70 8.11 -2.39 -0.02 1.68 16
50 H 0.08 1.89 7.27 -2.39 -0.02 1.88 16
Total: -1.00 -80.03 404.31 0.26 -79.77
By element:
Atomic # 1 Polarization: 43.28 SS G_CDS: -0.49 Total: 42.78 kcal
Atomic # 6 Polarization: 15.61 SS G_CDS: 6.18 Total: 21.79 kcal
Atomic # 7 Polarization: -117.14 SS G_CDS: -6.30 Total: -123.44 kcal
Atomic # 8 Polarization: -65.85 SS G_CDS: -1.15 Total: -67.00 kcal
Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal
Total: -80.03 0.26 -79.77 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001201154618.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.232 kcal
(2) G-P(sol) polarization free energy of solvation -80.029 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.768 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.000 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds