Wall clock time and date at job start Tue Mar 31 2020 23:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.82264 * 2 1 4 4 C 1.54381 * 109.82990 * 239.11455 * 2 1 3 5 5 C 1.55540 * 102.14829 * 219.05629 * 4 2 1 6 6 H 1.09002 * 111.13686 * 276.22391 * 5 4 2 7 7 C 1.50692 * 111.13996 * 152.08153 * 5 4 2 8 8 O 1.21285 * 120.00048 * 6.97152 * 7 5 4 9 9 N 1.34779 * 120.00103 * 186.97158 * 7 5 4 10 10 C 1.46931 * 120.62894 * 359.71740 * 9 7 5 11 11 C 1.52757 * 109.00808 * 233.58851 * 10 9 7 12 12 C 1.53040 * 109.38154 * 305.58706 * 11 10 9 13 13 N 1.46906 * 109.44766 * 181.25817 * 12 11 10 14 14 C 1.46901 * 111.00048 * 84.93883 * 13 12 11 15 15 C 1.50706 * 109.46899 * 180.02562 * 14 13 12 16 16 O 1.21294 * 119.99856 * 359.97438 * 15 14 13 17 17 N 1.34769 * 119.99792 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99937 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00087 * 0.02562 * 18 17 15 20 20 C 1.38956 * 120.00100 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99701 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99814 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46953 * 90.00241 * 22 20 18 24 24 H 1.48501 * 109.46714 * 210.00094 * 22 20 18 25 25 H 1.48502 * 109.47322 * 329.99665 * 22 20 18 26 26 C 1.53040 * 109.54086 * 61.24291 * 12 11 10 27 27 C 1.46924 * 120.63498 * 180.02562 * 9 7 5 28 28 C 1.54945 * 100.94760 * 34.15203 * 5 4 2 29 29 O 1.43242 * 109.83167 * 120.89011 * 2 1 3 30 30 H 1.08998 * 109.46999 * 300.70021 * 1 2 3 31 31 H 1.09001 * 109.47261 * 60.69739 * 1 2 3 32 32 H 1.08997 * 109.47307 * 180.70470 * 1 2 3 33 33 H 1.09000 * 110.84606 * 337.22954 * 4 2 1 34 34 H 1.08997 * 110.85312 * 100.84912 * 4 2 1 35 35 H 1.08995 * 109.58369 * 353.42042 * 10 9 7 36 36 H 1.08995 * 109.58453 * 113.84181 * 10 9 7 37 37 H 1.09001 * 109.56146 * 185.55621 * 11 10 9 38 38 H 1.09000 * 109.38753 * 65.51833 * 11 10 9 39 39 H 1.09007 * 109.46087 * 301.21875 * 12 11 10 40 40 H 1.00899 * 110.99730 * 208.89565 * 13 12 11 41 41 H 1.08997 * 109.46949 * 299.99620 * 14 13 12 42 42 H 1.08995 * 109.47164 * 60.00145 * 14 13 12 43 43 H 0.96997 * 120.00368 * 0.02562 * 17 15 14 44 44 H 0.97003 * 119.99431 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.49871 * 178.68547 * 26 12 11 46 46 H 1.09001 * 109.52207 * 58.60032 * 26 12 11 47 47 H 1.08997 * 109.58391 * 246.15748 * 27 9 7 48 48 H 1.09007 * 109.58361 * 6.43440 * 27 9 7 49 49 H 1.08998 * 110.30889 * 204.61984 * 28 5 4 50 50 H 1.08998 * 110.39298 * 82.49594 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2755 -1.5202 -0.6750 6 1 4.1637 -0.8889 -0.6484 7 6 3.5333 -2.7819 -1.4576 8 8 2.9053 -3.0061 -2.4707 9 7 4.4617 -3.6612 -1.0317 10 6 5.2347 -3.4006 0.1903 11 6 6.7244 -3.5031 -0.1320 12 6 7.0115 -4.8592 -0.7805 13 7 8.4487 -4.9715 -1.0636 14 6 9.1819 -5.4495 0.1161 15 6 10.6494 -5.5512 -0.2116 16 8 11.0453 -5.2551 -1.3192 17 7 11.5215 -5.9722 0.7256 18 6 12.8564 -6.0652 0.4273 19 1 13.2091 -5.8008 -0.5586 20 6 13.7558 -6.4987 1.3938 21 7 13.3266 -6.8200 2.5936 22 14 15.5747 -6.6248 0.9875 23 1 16.2422 -5.3357 1.3004 24 1 16.1883 -7.7090 1.7957 25 1 15.7394 -6.9299 -0.4564 26 6 6.2236 -4.9789 -2.0871 27 6 4.7247 -4.8955 -1.7841 28 6 2.7765 -1.8427 0.7560 29 8 2.0160 -0.6918 1.1563 30 1 -0.3633 0.5247 0.8836 31 1 -0.3634 0.5030 -0.8962 32 1 -0.3634 -1.0275 0.0126 33 1 1.3017 -1.4347 -1.6305 34 1 2.3657 -0.0409 -2.0173 35 1 5.0100 -2.3995 0.5582 36 1 4.9764 -4.1379 0.9503 37 1 7.3038 -3.4091 0.7865 38 1 7.0015 -2.7046 -0.8203 39 1 6.7118 -5.6574 -0.1013 40 1 8.6148 -5.5692 -1.8594 41 1 9.0416 -4.7492 0.9395 42 1 8.8050 -6.4305 0.4053 43 1 11.2047 -6.2101 1.6110 44 1 13.9545 -7.1223 3.2684 45 1 6.4466 -5.9352 -2.5601 46 1 6.5048 -4.1669 -2.7577 47 1 4.4239 -5.7575 -1.1887 48 1 4.1615 -4.8815 -2.7173 49 1 3.6224 -1.9894 1.4275 50 1 2.1434 -2.7299 0.7465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201339278.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:40 Heat of formation + Delta-G solvation = -117.511419 kcal Electronic energy + Delta-G solvation = -29644.540337 eV Core-core repulsion = 25478.367969 eV Total energy + Delta-G solvation = -4166.172369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.09968 -39.46289 -38.46670 -37.68119 -35.21983 -33.90460 -33.00444 -32.49646 -31.34995 -31.13239 -30.93320 -27.07325 -26.56192 -25.06878 -23.89103 -23.73084 -22.42621 -21.51668 -20.67444 -19.41739 -19.10088 -17.94479 -17.87393 -17.04502 -16.63397 -16.08131 -15.76864 -15.54155 -15.35428 -14.91959 -14.67923 -14.53970 -14.28316 -14.19546 -13.91234 -13.82211 -13.68912 -13.42617 -13.02143 -12.96704 -12.83642 -12.44092 -12.29039 -12.23212 -12.12315 -11.71504 -11.59902 -11.49199 -11.43952 -11.39934 -11.24144 -11.08293 -10.91332 -10.59474 -10.41376 -10.24068 -10.09980 -9.97826 -9.53486 -9.01098 -8.49003 -8.12693 -7.98807 -6.44369 -3.85201 2.22673 2.56471 3.16136 3.24949 3.30701 3.33119 3.80656 3.87584 4.01060 4.12488 4.23290 4.33759 4.44052 4.51909 4.60845 4.65903 4.72147 4.80873 4.90738 4.95232 5.02024 5.07666 5.16891 5.20935 5.21283 5.24643 5.28124 5.34292 5.40580 5.42446 5.51675 5.54383 5.62724 5.67658 5.72679 5.80162 5.81530 5.91866 5.98120 6.12989 6.20612 6.27654 6.54075 7.02035 7.18435 7.52836 7.60534 7.79158 8.03730 8.58447 9.15371 9.51476 10.02877 10.73311 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025267 B = 0.001813 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.909560 B =15440.596914 C =16081.890198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.074 3.926 3 H 0.084 0.916 4 C -0.130 4.130 5 C -0.150 4.150 6 H 0.116 0.884 7 C 0.529 3.471 8 O -0.539 6.539 9 N -0.607 5.607 10 C 0.099 3.901 11 C -0.125 4.125 12 C 0.088 3.912 13 N -0.665 5.665 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.136 4.136 27 C 0.115 3.885 28 C 0.061 3.939 29 O -0.374 6.374 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.351 0.649 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.660 8.860 -1.528 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.016 3.984 3 H 0.102 0.898 4 C -0.168 4.168 5 C -0.171 4.171 6 H 0.134 0.866 7 C 0.317 3.683 8 O -0.416 6.416 9 N -0.340 5.340 10 C -0.024 4.024 11 C -0.164 4.164 12 C -0.022 4.022 13 N -0.298 5.298 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.174 4.174 27 C -0.008 4.008 28 C -0.015 4.015 29 O -0.294 6.294 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.171 0.829 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.517 9.571 -2.317 26.421 hybrid contribution 0.762 -1.275 0.376 1.532 sum -23.755 8.296 -1.941 25.237 Atomic orbital electron populations 1.22140 0.94643 1.02765 1.02463 1.22805 0.94677 0.96446 0.84452 0.89838 1.23123 0.96443 0.99434 0.97776 1.23080 1.01461 0.96017 0.96535 0.86603 1.20144 0.79183 0.84007 0.85004 1.90699 1.48912 1.76561 1.25389 1.48129 1.37831 1.21514 1.26570 1.21979 0.91855 1.02371 0.86209 1.21882 0.93794 0.98536 1.02212 1.21479 0.88380 0.96537 0.95823 1.60083 1.05745 1.57285 1.06650 1.21719 0.93912 0.98660 0.93854 1.19813 0.87021 0.84327 0.86319 1.90528 1.79268 1.54214 1.22732 1.41863 1.07173 1.57940 1.13029 1.19708 0.81901 1.41683 0.99673 0.87923 1.25265 1.00661 0.97059 0.94942 1.69611 1.36021 1.45123 1.03535 0.85852 0.81906 0.77902 0.78600 1.20375 1.20928 1.19429 1.22092 0.93974 1.03436 0.97940 1.21600 0.96064 0.85523 0.97605 1.23525 0.95511 0.89642 0.92854 1.88467 1.70640 1.40145 1.30103 0.91800 0.91315 0.92125 0.89018 0.89359 0.89183 0.90844 0.90162 0.90517 0.93776 0.82868 0.89686 0.93898 0.77479 0.91863 0.90457 0.90359 0.91314 0.88729 0.88476 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.44 37.16 0.35 -0.66 16 2 C 0.07 0.53 4.15 -26.01 -0.11 0.42 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -0.98 5.66 -24.66 -0.14 -1.12 16 5 C -0.15 -1.15 2.50 -89.40 -0.22 -1.38 16 6 H 0.12 0.77 7.84 -51.93 -0.41 0.36 16 7 C 0.53 5.39 7.10 -10.99 -0.08 5.31 16 8 O -0.54 -7.29 15.21 5.55 0.08 -7.21 16 9 N -0.61 -5.46 2.98 -173.06 -0.52 -5.98 16 10 C 0.10 0.72 5.47 -3.93 -0.02 0.70 16 11 C -0.13 -1.21 5.57 -26.84 -0.15 -1.36 16 12 C 0.09 0.97 2.46 -67.67 -0.17 0.80 16 13 N -0.66 -10.03 5.93 -107.94 -0.64 -10.68 16 14 C 0.05 0.85 5.97 -4.97 -0.03 0.83 16 15 C 0.44 10.16 7.82 -10.99 -0.09 10.07 16 16 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 17 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 18 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.14 -1.34 5.36 -26.63 -0.14 -1.48 16 27 C 0.11 1.05 6.43 -3.73 -0.02 1.02 16 28 C 0.06 0.45 6.34 38.18 0.24 0.69 16 29 O -0.37 -3.34 11.02 -35.23 -0.39 -3.73 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.80 7.19 -51.93 -0.37 0.43 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.52 4.35 -51.93 -0.23 0.29 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.78 7.42 -51.93 -0.39 0.40 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.46 7.80 -51.93 -0.40 0.06 16 40 H 0.35 5.56 8.03 -39.29 -0.32 5.25 16 41 H 0.08 1.30 7.41 -51.93 -0.38 0.91 16 42 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 43 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.09 0.96 7.00 -51.93 -0.36 0.60 16 49 H 0.10 0.55 6.11 -51.93 -0.32 0.23 16 50 H 0.06 0.49 8.02 -51.93 -0.42 0.07 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -33.19 393.55 -8.69 -41.88 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -8.07 Total: 11.21 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -0.82 Total: 5.89 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.49 Total: -54.26 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.22 Total: -26.50 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.19 -8.69 -41.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201339278.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.634 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds