Wall clock time and date at job start Tue Mar 31 2020 23:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.82264 * 2 1 4 4 C 1.54381 * 109.82990 * 239.11455 * 2 1 3 5 5 C 1.55540 * 102.14829 * 219.05629 * 4 2 1 6 6 H 1.09002 * 111.13686 * 276.22391 * 5 4 2 7 7 C 1.50692 * 111.13996 * 152.08153 * 5 4 2 8 8 O 1.21285 * 120.00048 * 6.97152 * 7 5 4 9 9 N 1.34779 * 120.00103 * 186.97158 * 7 5 4 10 10 C 1.46931 * 120.62894 * 359.71740 * 9 7 5 11 11 C 1.52757 * 109.00808 * 233.58851 * 10 9 7 12 12 C 1.53040 * 109.38154 * 305.58706 * 11 10 9 13 13 N 1.46906 * 109.44766 * 181.25817 * 12 11 10 14 14 C 1.46901 * 111.00048 * 84.93883 * 13 12 11 15 15 C 1.50706 * 109.46899 * 180.02562 * 14 13 12 16 16 O 1.21294 * 119.99856 * 359.97438 * 15 14 13 17 17 N 1.34769 * 119.99792 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99937 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00087 * 0.02562 * 18 17 15 20 20 C 1.38956 * 120.00100 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99701 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99814 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46953 * 90.00241 * 22 20 18 24 24 H 1.48501 * 109.46714 * 210.00094 * 22 20 18 25 25 H 1.48502 * 109.47322 * 329.99665 * 22 20 18 26 26 C 1.53040 * 109.54086 * 61.24291 * 12 11 10 27 27 C 1.46924 * 120.63498 * 180.02562 * 9 7 5 28 28 C 1.54945 * 100.94760 * 34.15203 * 5 4 2 29 29 O 1.43242 * 109.83167 * 120.89011 * 2 1 3 30 30 H 1.08998 * 109.46999 * 300.70021 * 1 2 3 31 31 H 1.09001 * 109.47261 * 60.69739 * 1 2 3 32 32 H 1.08997 * 109.47307 * 180.70470 * 1 2 3 33 33 H 1.09000 * 110.84606 * 337.22954 * 4 2 1 34 34 H 1.08997 * 110.85312 * 100.84912 * 4 2 1 35 35 H 1.08995 * 109.58369 * 353.42042 * 10 9 7 36 36 H 1.08995 * 109.58453 * 113.84181 * 10 9 7 37 37 H 1.09001 * 109.56146 * 185.55621 * 11 10 9 38 38 H 1.09000 * 109.38753 * 65.51833 * 11 10 9 39 39 H 1.09007 * 109.46087 * 301.21875 * 12 11 10 40 40 H 1.00899 * 110.99730 * 208.89565 * 13 12 11 41 41 H 1.08997 * 109.46949 * 299.99620 * 14 13 12 42 42 H 1.08995 * 109.47164 * 60.00145 * 14 13 12 43 43 H 0.96997 * 120.00368 * 0.02562 * 17 15 14 44 44 H 0.97003 * 119.99431 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.49871 * 178.68547 * 26 12 11 46 46 H 1.09001 * 109.52207 * 58.60032 * 26 12 11 47 47 H 1.08997 * 109.58391 * 246.15748 * 27 9 7 48 48 H 1.09007 * 109.58361 * 6.43440 * 27 9 7 49 49 H 1.08998 * 110.30889 * 204.61984 * 28 5 4 50 50 H 1.08998 * 110.39298 * 82.49594 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2755 -1.5202 -0.6750 6 1 4.1637 -0.8889 -0.6484 7 6 3.5333 -2.7819 -1.4576 8 8 2.9053 -3.0061 -2.4707 9 7 4.4617 -3.6612 -1.0317 10 6 5.2347 -3.4006 0.1903 11 6 6.7244 -3.5031 -0.1320 12 6 7.0115 -4.8592 -0.7805 13 7 8.4487 -4.9715 -1.0636 14 6 9.1819 -5.4495 0.1161 15 6 10.6494 -5.5512 -0.2116 16 8 11.0453 -5.2551 -1.3192 17 7 11.5215 -5.9722 0.7256 18 6 12.8564 -6.0652 0.4273 19 1 13.2091 -5.8008 -0.5586 20 6 13.7558 -6.4987 1.3938 21 7 13.3266 -6.8200 2.5936 22 14 15.5747 -6.6248 0.9875 23 1 16.2422 -5.3357 1.3004 24 1 16.1883 -7.7090 1.7957 25 1 15.7394 -6.9299 -0.4564 26 6 6.2236 -4.9789 -2.0871 27 6 4.7247 -4.8955 -1.7841 28 6 2.7765 -1.8427 0.7560 29 8 2.0160 -0.6918 1.1563 30 1 -0.3633 0.5247 0.8836 31 1 -0.3634 0.5030 -0.8962 32 1 -0.3634 -1.0275 0.0126 33 1 1.3017 -1.4347 -1.6305 34 1 2.3657 -0.0409 -2.0173 35 1 5.0100 -2.3995 0.5582 36 1 4.9764 -4.1379 0.9503 37 1 7.3038 -3.4091 0.7865 38 1 7.0015 -2.7046 -0.8203 39 1 6.7118 -5.6574 -0.1013 40 1 8.6148 -5.5692 -1.8594 41 1 9.0416 -4.7492 0.9395 42 1 8.8050 -6.4305 0.4053 43 1 11.2047 -6.2101 1.6110 44 1 13.9545 -7.1223 3.2684 45 1 6.4466 -5.9352 -2.5601 46 1 6.5048 -4.1669 -2.7577 47 1 4.4239 -5.7575 -1.1887 48 1 4.1615 -4.8815 -2.7173 49 1 3.6224 -1.9894 1.4275 50 1 2.1434 -2.7299 0.7465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201339278.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:38 Heat of formation + Delta-G solvation = -142.220198 kcal Electronic energy + Delta-G solvation = -29645.611790 eV Core-core repulsion = 25478.367969 eV Total energy + Delta-G solvation = -4167.243822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.80954 -40.33454 -39.91992 -38.74950 -36.37760 -35.77240 -33.72903 -33.28328 -33.07568 -32.04724 -31.75454 -28.43135 -27.16610 -26.44522 -25.11377 -24.45855 -23.26931 -22.07585 -21.48765 -21.05096 -20.02010 -19.84694 -18.58727 -17.89274 -17.60338 -17.26744 -16.79788 -16.52223 -16.34897 -16.21747 -16.05005 -15.52227 -15.33941 -15.25552 -14.99476 -14.80736 -14.64715 -14.40326 -13.88712 -13.83445 -13.58713 -13.52679 -13.48280 -13.29271 -13.12567 -12.90142 -12.84055 -12.64440 -12.41505 -12.23399 -12.20514 -12.12082 -12.02789 -11.78870 -11.73645 -11.50546 -11.44143 -10.90637 -10.54726 -10.33235 -10.00996 -9.76286 -9.31805 -8.46590 -5.95073 1.38199 1.42278 1.46114 1.54584 1.86979 2.06274 2.29357 2.76607 2.90164 3.19335 3.20995 3.47354 3.51881 3.75543 3.78518 3.81877 3.99160 4.04716 4.08913 4.16762 4.21588 4.28746 4.33366 4.42460 4.46521 4.51154 4.55060 4.62687 4.64894 4.66560 4.75027 4.77131 4.79574 4.83908 4.88625 4.96812 5.00874 5.15299 5.16808 5.30437 5.35546 5.41535 5.48361 5.92089 5.98657 6.14338 6.29781 6.40622 6.60866 7.03247 7.13305 7.57228 8.12848 8.70635 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025267 B = 0.001813 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.909560 B =15440.596914 C =16081.890198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.072 3.928 3 H 0.096 0.904 4 C -0.129 4.129 5 C -0.146 4.146 6 H 0.131 0.869 7 C 0.526 3.474 8 O -0.579 6.579 9 N -0.605 5.605 10 C 0.102 3.898 11 C -0.123 4.123 12 C 0.089 3.911 13 N -0.681 5.681 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.128 4.128 27 C 0.117 3.883 28 C 0.063 3.937 29 O -0.391 6.391 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.344 0.656 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.118 0.882 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.213 9.069 0.016 26.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 H 0.114 0.886 4 C -0.167 4.167 5 C -0.167 4.167 6 H 0.149 0.851 7 C 0.315 3.685 8 O -0.459 6.459 9 N -0.338 5.338 10 C -0.020 4.020 11 C -0.162 4.162 12 C -0.020 4.020 13 N -0.313 5.313 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.166 4.166 27 C -0.005 4.005 28 C -0.013 4.013 29 O -0.311 6.311 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.163 0.837 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.135 0.865 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.087 9.780 -0.729 26.935 hybrid contribution 0.897 -1.335 -0.148 1.615 sum -24.189 8.445 -0.877 25.636 Atomic orbital electron populations 1.22141 0.94211 1.02395 1.03168 1.22910 0.95111 0.96778 0.83682 0.88608 1.23098 0.96083 0.99300 0.98217 1.23091 1.02100 0.94961 0.96523 0.85101 1.20559 0.78803 0.84581 0.84593 1.90682 1.50503 1.77483 1.27227 1.48225 1.37483 1.21137 1.26907 1.22111 0.89840 1.04312 0.85735 1.21856 0.95532 0.97014 1.01765 1.21599 0.85889 0.97894 0.96661 1.60113 1.08198 1.57173 1.05846 1.21572 0.89258 1.00688 0.94952 1.20963 0.89460 0.82030 0.85169 1.90497 1.80744 1.55497 1.24488 1.41926 1.06747 1.58670 1.13654 1.19655 0.83771 1.43801 0.99235 0.90468 1.26009 1.04391 0.96101 0.94655 1.69664 1.37422 1.44897 1.03969 0.84949 0.77018 0.78343 0.78154 1.19692 1.19503 1.19900 1.21999 0.94379 1.03048 0.97200 1.21564 0.95042 0.86364 0.97575 1.23595 0.95925 0.89063 0.92716 1.88448 1.70984 1.40675 1.30994 0.91630 0.90096 0.93014 0.90626 0.88686 0.87292 0.88633 0.89720 0.92268 0.92055 0.83702 0.87573 0.91489 0.76903 0.91291 0.89842 0.92298 0.89416 0.90123 0.86454 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.44 71.98 0.68 -1.18 16 2 C 0.07 0.93 4.15 31.06 0.13 1.06 16 3 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.13 -1.83 5.66 31.94 0.18 -1.65 16 5 C -0.15 -2.01 2.50 -10.00 -0.02 -2.04 16 6 H 0.13 1.42 7.84 -2.39 -0.02 1.41 16 7 C 0.53 10.19 7.10 87.65 0.62 10.81 16 8 O -0.58 -15.75 15.21 -3.04 -0.05 -15.79 16 9 N -0.61 -9.80 2.98 -819.83 -2.44 -12.25 16 10 C 0.10 1.18 5.47 86.22 0.47 1.65 16 11 C -0.12 -2.08 5.57 30.53 0.17 -1.91 16 12 C 0.09 1.76 2.46 44.94 0.11 1.87 16 13 N -0.68 -19.75 5.93 -495.41 -2.94 -22.69 16 14 C 0.07 2.14 5.97 85.56 0.51 2.65 16 15 C 0.44 20.17 7.82 87.66 0.69 20.86 16 16 O -0.63 -34.30 15.78 -3.07 -0.05 -34.35 16 17 N -0.57 -28.73 5.29 -306.98 -1.62 -30.36 16 18 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 21 N -0.92 -48.72 13.05 21.66 0.28 -48.43 16 22 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C -0.13 -2.38 5.36 30.66 0.16 -2.22 16 27 C 0.12 1.98 6.43 86.35 0.56 2.53 16 28 C 0.06 0.79 6.34 72.65 0.46 1.25 16 29 O -0.39 -6.27 11.02 -148.98 -1.64 -7.91 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 1.33 7.19 -2.39 -0.02 1.31 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 0.87 4.35 -2.39 -0.01 0.86 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 1.39 7.42 -2.39 -0.02 1.38 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.06 7.80 -2.38 -0.02 1.04 16 40 H 0.34 10.77 8.03 -89.69 -0.72 10.05 16 41 H 0.11 2.95 7.41 -2.39 -0.02 2.93 16 42 H 0.07 1.83 8.05 -2.39 -0.02 1.81 16 43 H 0.40 18.75 7.90 -92.71 -0.73 18.01 16 44 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 45 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 48 H 0.08 1.63 7.00 -2.38 -0.02 1.61 16 49 H 0.12 0.94 6.11 -2.39 -0.01 0.92 16 50 H 0.06 0.80 8.02 -2.39 -0.02 0.78 16 Total: -1.00 -72.99 393.55 -0.92 -73.91 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -0.49 Total: 37.84 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.00 Total: 15.52 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -6.72 Total: -113.72 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -1.74 Total: -58.05 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -72.99 -0.92 -73.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201339278.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.314 kcal (2) G-P(sol) polarization free energy of solvation -72.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds