Wall clock time and date at job start Tue Mar 31 2020 23:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.55158 * 2 1 4 4 C 1.54995 * 110.75046 * 122.97463 * 2 1 3 5 5 C 1.54813 * 102.09292 * 155.58742 * 4 2 1 6 6 H 1.09001 * 110.59859 * 97.84631 * 5 4 2 7 7 C 1.50695 * 110.48536 * 220.44164 * 5 4 2 8 8 O 1.21274 * 120.00413 * 356.49163 * 7 5 4 9 9 N 1.34784 * 119.99635 * 176.22121 * 7 5 4 10 10 C 1.46918 * 120.63039 * 359.71713 * 9 7 5 11 11 C 1.52761 * 109.01190 * 233.58189 * 10 9 7 12 12 C 1.53040 * 109.38299 * 305.59408 * 11 10 9 13 13 N 1.46898 * 109.44673 * 181.25116 * 12 11 10 14 14 C 1.46900 * 111.00446 * 84.93575 * 13 12 11 15 15 C 1.50693 * 109.47265 * 179.97438 * 14 13 12 16 16 O 1.21292 * 120.00332 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99964 * 179.97438 * 15 14 13 18 18 C 1.37091 * 119.99809 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00293 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99738 * 180.02562 * 18 17 15 21 21 N 1.31419 * 120.00173 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00140 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.46869 * 89.99719 * 22 20 18 24 24 H 1.48500 * 109.47135 * 209.99812 * 22 20 18 25 25 H 1.48499 * 109.46843 * 330.00202 * 22 20 18 26 26 C 1.53036 * 109.53902 * 61.23432 * 12 11 10 27 27 C 1.46931 * 120.62757 * 179.97438 * 9 7 5 28 28 C 1.54101 * 104.18628 * 339.11533 * 5 4 2 29 29 O 1.43740 * 107.29362 * 357.97485 * 28 5 4 30 30 H 1.09001 * 109.47482 * 181.42582 * 1 2 3 31 31 H 1.08998 * 109.46756 * 301.42983 * 1 2 3 32 32 H 1.09001 * 109.46662 * 61.42417 * 1 2 3 33 33 H 1.09001 * 110.91193 * 37.38820 * 4 2 1 34 34 H 1.08999 * 110.90270 * 273.78488 * 4 2 1 35 35 H 1.08998 * 109.59258 * 353.42356 * 10 9 7 36 36 H 1.09000 * 109.58451 * 113.84577 * 10 9 7 37 37 H 1.08997 * 109.56476 * 185.55091 * 11 10 9 38 38 H 1.09005 * 109.38339 * 65.51713 * 11 10 9 39 39 H 1.08996 * 109.45822 * 301.21147 * 12 11 10 40 40 H 1.00907 * 110.99823 * 208.89139 * 13 12 11 41 41 H 1.09000 * 109.46723 * 300.00267 * 14 13 12 42 42 H 1.09003 * 109.46710 * 60.00149 * 14 13 12 43 43 H 0.96996 * 119.99774 * 0.02562 * 17 15 14 44 44 H 0.96998 * 119.99894 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.49840 * 178.68334 * 26 12 11 46 46 H 1.08997 * 109.49941 * 58.58964 * 26 12 11 47 47 H 1.09000 * 109.58531 * 246.15235 * 27 9 7 48 48 H 1.08997 * 109.58373 * 6.58294 * 27 9 7 49 49 H 1.09004 * 109.87449 * 117.39289 * 28 5 4 50 50 H 1.08991 * 109.87861 * 238.39189 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0792 -0.7889 1.2159 5 6 3.4831 -1.2130 0.7201 6 1 4.2449 -0.5297 1.0954 7 6 3.7880 -2.6261 1.1456 8 8 3.0010 -3.2335 1.8403 9 7 4.9328 -3.2170 0.7495 10 6 5.8903 -2.4983 -0.1022 11 6 6.1928 -3.3464 -1.3362 12 6 6.6617 -4.7350 -0.8957 13 7 6.9816 -5.5419 -2.0808 14 6 8.3557 -5.2893 -2.5346 15 6 8.6470 -6.1331 -3.7487 16 8 7.7937 -6.8720 -4.1926 17 7 9.8553 -6.0661 -4.3419 18 6 10.1201 -6.8334 -5.4467 19 1 9.3603 -7.4913 -5.8419 20 6 11.3661 -6.7646 -6.0579 21 7 11.6198 -7.4998 -7.1173 22 14 12.6805 -5.6272 -5.3738 23 1 13.4911 -6.3572 -4.3661 24 1 13.5606 -5.1672 -6.4780 25 1 12.0348 -4.4532 -4.7335 26 6 5.5512 -5.4206 -0.0966 27 6 5.2443 -4.5939 1.1566 28 6 3.3852 -1.1211 -0.8150 29 8 2.0384 -0.7336 -1.1349 30 1 -0.3634 -1.0273 0.0256 31 1 -0.3633 0.5359 0.8769 32 1 -0.3633 0.4916 -0.9025 33 1 1.4605 -1.6616 1.4251 34 1 2.1541 -0.1474 2.0940 35 1 5.4608 -1.5455 -0.4116 36 1 6.8123 -2.3229 0.4521 37 1 6.9753 -2.8679 -1.9251 38 1 5.2901 -3.4417 -1.9398 39 1 7.5504 -4.6373 -0.2723 40 1 6.8353 -6.5238 -1.9000 41 1 8.4661 -4.2352 -2.7893 42 1 9.0543 -5.5458 -1.7382 43 1 10.5376 -5.4749 -3.9871 44 1 12.4897 -7.4520 -7.5437 45 1 5.8770 -6.4185 0.1968 46 1 4.6543 -5.4964 -0.7113 47 1 6.1127 -4.5926 1.8154 48 1 4.3886 -5.0234 1.6774 49 1 4.0845 -0.3722 -1.1868 50 1 3.6098 -2.0907 -1.2594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201339283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:44 Heat of formation + Delta-G solvation = -109.395416 kcal Electronic energy + Delta-G solvation = -29946.994250 eV Core-core repulsion = 25781.173818 eV Total energy + Delta-G solvation = -4165.820432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.17479 -39.38914 -38.57896 -37.76192 -35.29706 -33.95460 -33.02115 -32.50181 -31.71209 -31.20401 -31.04609 -27.22222 -26.53744 -25.01368 -23.81032 -23.66435 -22.41202 -21.62900 -20.81445 -19.44778 -19.07814 -18.32883 -17.69846 -17.11998 -16.67388 -16.13876 -15.97999 -15.49706 -15.38404 -15.07878 -14.92799 -14.68092 -14.41330 -14.15851 -13.96182 -13.71262 -13.48286 -13.23518 -13.04186 -12.76042 -12.71597 -12.57532 -12.42032 -12.26958 -12.16412 -12.08153 -11.67218 -11.64260 -11.56995 -11.37912 -11.29807 -11.21360 -11.00046 -10.64964 -10.62078 -10.28811 -9.99708 -9.89120 -9.59793 -9.03446 -8.61538 -8.24139 -8.18450 -6.33073 -3.84658 2.22344 2.56534 2.99764 3.03935 3.12677 3.39898 3.71037 3.86343 3.95457 4.03592 4.08013 4.37890 4.40676 4.53320 4.55849 4.65964 4.72479 4.76033 4.80015 4.95119 4.97412 5.00162 5.10377 5.17135 5.18811 5.22311 5.25832 5.31665 5.35279 5.40419 5.49103 5.52331 5.55274 5.61210 5.72077 5.74259 5.76252 5.81016 5.87987 5.94214 6.11987 6.19496 6.48732 7.00314 7.06738 7.51854 7.56191 7.78942 8.12375 8.57461 8.92910 9.40088 9.80222 10.80022 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.002030 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.536800 B =13786.430509 C =14249.511936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.071 0.929 4 C -0.135 4.135 5 C -0.148 4.148 6 H 0.110 0.890 7 C 0.527 3.473 8 O -0.537 6.537 9 N -0.609 5.609 10 C 0.100 3.900 11 C -0.127 4.127 12 C 0.089 3.911 13 N -0.664 5.664 14 C 0.049 3.951 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C -0.137 4.137 27 C 0.115 3.885 28 C 0.056 3.944 29 O -0.368 6.368 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.353 0.647 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.128 18.021 20.602 30.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.089 0.911 4 C -0.173 4.173 5 C -0.169 4.169 6 H 0.128 0.872 7 C 0.314 3.686 8 O -0.414 6.414 9 N -0.343 5.343 10 C -0.023 4.023 11 C -0.166 4.166 12 C -0.021 4.021 13 N -0.298 5.298 14 C -0.084 4.084 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.175 4.175 27 C -0.007 4.007 28 C -0.021 4.021 29 O -0.287 6.287 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.173 0.827 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.113 0.887 49 H 0.089 0.911 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.360 17.493 19.850 30.104 hybrid contribution 2.203 0.489 1.133 2.525 sum -12.157 17.982 20.984 30.190 Atomic orbital electron populations 1.21770 0.92810 1.03275 1.02549 1.23193 0.95676 0.95158 0.84700 0.91071 1.23182 0.94022 1.01790 0.98330 1.22744 1.00775 0.95294 0.98119 0.87193 1.20292 0.80534 0.88096 0.79644 1.90682 1.47038 1.65346 1.38292 1.48115 1.20149 1.15083 1.50948 1.21887 0.92867 0.95789 0.91767 1.21907 1.03084 0.95057 0.96528 1.21471 0.96528 0.93763 0.90379 1.60066 1.23844 1.12614 1.33227 1.21753 0.89530 1.00690 0.96445 1.19712 0.83276 0.86813 0.86744 1.90573 1.45804 1.42132 1.66046 1.42208 1.12435 1.40088 1.28274 1.19432 1.00435 1.20266 1.03258 0.86283 1.25052 0.97422 0.97588 0.96162 1.69625 1.23342 1.39323 1.19779 0.86664 0.82351 0.80847 0.79460 1.19681 1.20155 1.19503 1.22116 1.00059 0.98865 0.96486 1.21611 1.01922 0.80793 0.96412 1.23279 0.85366 1.01563 0.91880 1.88949 1.27175 1.73702 1.38923 0.91548 0.90993 0.91647 0.88349 0.89762 0.89386 0.90985 0.90182 0.90350 0.93776 0.82654 0.89564 0.93795 0.79727 0.91601 0.90395 0.90232 0.91359 0.88687 0.91108 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.67 37.16 0.36 -0.60 16 2 C 0.07 0.52 3.97 -25.68 -0.10 0.42 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.14 -1.03 5.94 -24.72 -0.15 -1.18 16 5 C -0.15 -1.11 2.54 -90.24 -0.23 -1.34 16 6 H 0.11 0.56 8.01 -51.93 -0.42 0.14 16 7 C 0.53 5.41 6.92 -10.98 -0.08 5.33 16 8 O -0.54 -7.38 14.87 5.56 0.08 -7.30 16 9 N -0.61 -5.39 2.94 -173.01 -0.51 -5.90 16 10 C 0.10 0.69 5.51 -3.94 -0.02 0.67 16 11 C -0.13 -1.16 5.55 -26.83 -0.15 -1.30 16 12 C 0.09 0.92 2.46 -67.67 -0.17 0.75 16 13 N -0.66 -9.58 5.93 -107.96 -0.64 -10.22 16 14 C 0.05 0.76 5.96 -4.98 -0.03 0.73 16 15 C 0.45 9.95 7.82 -10.99 -0.09 9.87 16 16 O -0.56 -14.98 15.78 5.55 0.09 -14.90 16 17 N -0.59 -13.81 5.09 -10.97 -0.06 -13.87 16 18 C -0.31 -8.56 10.16 -14.94 -0.15 -8.72 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 20 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 21 N -0.88 -25.58 13.96 55.50 0.77 -24.81 16 22 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 26 C -0.14 -1.31 5.36 -26.59 -0.14 -1.45 16 27 C 0.12 1.03 6.44 -3.69 -0.02 1.00 16 28 C 0.06 0.45 5.56 37.73 0.21 0.66 16 29 O -0.37 -3.78 11.22 -35.23 -0.40 -4.18 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.98 6.84 -51.93 -0.36 0.62 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.47 4.37 -51.93 -0.23 0.24 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.71 7.42 -51.93 -0.39 0.33 16 38 H 0.08 0.83 7.63 -51.93 -0.40 0.44 16 39 H 0.04 0.42 7.80 -51.93 -0.40 0.02 16 40 H 0.35 5.37 8.03 -39.29 -0.32 5.05 16 41 H 0.09 1.19 7.41 -51.93 -0.38 0.80 16 42 H 0.04 0.59 8.06 -51.93 -0.42 0.18 16 43 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 0.96 7.00 -51.93 -0.36 0.60 16 49 H 0.07 0.42 7.65 -51.93 -0.40 0.02 16 50 H 0.09 0.84 6.42 -51.93 -0.33 0.50 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -35.07 388.95 -8.35 -43.43 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -7.99 Total: 11.68 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.85 Total: 5.85 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.43 Total: -54.80 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.23 Total: -26.37 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.07 -8.35 -43.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201339283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.970 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds