Wall clock time and date at job start Tue Mar 31 2020 23:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.55158 * 2 1 4 4 C 1.54995 * 110.75046 * 122.97463 * 2 1 3 5 5 C 1.54813 * 102.09292 * 155.58742 * 4 2 1 6 6 H 1.09001 * 110.59859 * 97.84631 * 5 4 2 7 7 C 1.50695 * 110.48536 * 220.44164 * 5 4 2 8 8 O 1.21274 * 120.00413 * 356.49163 * 7 5 4 9 9 N 1.34784 * 119.99635 * 176.22121 * 7 5 4 10 10 C 1.46918 * 120.63039 * 359.71713 * 9 7 5 11 11 C 1.52761 * 109.01190 * 233.58189 * 10 9 7 12 12 C 1.53040 * 109.38299 * 305.59408 * 11 10 9 13 13 N 1.46898 * 109.44673 * 181.25116 * 12 11 10 14 14 C 1.46900 * 111.00446 * 84.93575 * 13 12 11 15 15 C 1.50693 * 109.47265 * 179.97438 * 14 13 12 16 16 O 1.21292 * 120.00332 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99964 * 179.97438 * 15 14 13 18 18 C 1.37091 * 119.99809 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00293 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99738 * 180.02562 * 18 17 15 21 21 N 1.31419 * 120.00173 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00140 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.46869 * 89.99719 * 22 20 18 24 24 H 1.48500 * 109.47135 * 209.99812 * 22 20 18 25 25 H 1.48499 * 109.46843 * 330.00202 * 22 20 18 26 26 C 1.53036 * 109.53902 * 61.23432 * 12 11 10 27 27 C 1.46931 * 120.62757 * 179.97438 * 9 7 5 28 28 C 1.54101 * 104.18628 * 339.11533 * 5 4 2 29 29 O 1.43740 * 107.29362 * 357.97485 * 28 5 4 30 30 H 1.09001 * 109.47482 * 181.42582 * 1 2 3 31 31 H 1.08998 * 109.46756 * 301.42983 * 1 2 3 32 32 H 1.09001 * 109.46662 * 61.42417 * 1 2 3 33 33 H 1.09001 * 110.91193 * 37.38820 * 4 2 1 34 34 H 1.08999 * 110.90270 * 273.78488 * 4 2 1 35 35 H 1.08998 * 109.59258 * 353.42356 * 10 9 7 36 36 H 1.09000 * 109.58451 * 113.84577 * 10 9 7 37 37 H 1.08997 * 109.56476 * 185.55091 * 11 10 9 38 38 H 1.09005 * 109.38339 * 65.51713 * 11 10 9 39 39 H 1.08996 * 109.45822 * 301.21147 * 12 11 10 40 40 H 1.00907 * 110.99823 * 208.89139 * 13 12 11 41 41 H 1.09000 * 109.46723 * 300.00267 * 14 13 12 42 42 H 1.09003 * 109.46710 * 60.00149 * 14 13 12 43 43 H 0.96996 * 119.99774 * 0.02562 * 17 15 14 44 44 H 0.96998 * 119.99894 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.49840 * 178.68334 * 26 12 11 46 46 H 1.08997 * 109.49941 * 58.58964 * 26 12 11 47 47 H 1.09000 * 109.58531 * 246.15235 * 27 9 7 48 48 H 1.08997 * 109.58373 * 6.58294 * 27 9 7 49 49 H 1.09004 * 109.87449 * 117.39289 * 28 5 4 50 50 H 1.08991 * 109.87861 * 238.39189 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0792 -0.7889 1.2159 5 6 3.4831 -1.2130 0.7201 6 1 4.2449 -0.5297 1.0954 7 6 3.7880 -2.6261 1.1456 8 8 3.0010 -3.2335 1.8403 9 7 4.9328 -3.2170 0.7495 10 6 5.8903 -2.4983 -0.1022 11 6 6.1928 -3.3464 -1.3362 12 6 6.6617 -4.7350 -0.8957 13 7 6.9816 -5.5419 -2.0808 14 6 8.3557 -5.2893 -2.5346 15 6 8.6470 -6.1331 -3.7487 16 8 7.7937 -6.8720 -4.1926 17 7 9.8553 -6.0661 -4.3419 18 6 10.1201 -6.8334 -5.4467 19 1 9.3603 -7.4913 -5.8419 20 6 11.3661 -6.7646 -6.0579 21 7 11.6198 -7.4998 -7.1173 22 14 12.6805 -5.6272 -5.3738 23 1 13.4911 -6.3572 -4.3661 24 1 13.5606 -5.1672 -6.4780 25 1 12.0348 -4.4532 -4.7335 26 6 5.5512 -5.4206 -0.0966 27 6 5.2443 -4.5939 1.1566 28 6 3.3852 -1.1211 -0.8150 29 8 2.0384 -0.7336 -1.1349 30 1 -0.3634 -1.0273 0.0256 31 1 -0.3633 0.5359 0.8769 32 1 -0.3633 0.4916 -0.9025 33 1 1.4605 -1.6616 1.4251 34 1 2.1541 -0.1474 2.0940 35 1 5.4608 -1.5455 -0.4116 36 1 6.8123 -2.3229 0.4521 37 1 6.9753 -2.8679 -1.9251 38 1 5.2901 -3.4417 -1.9398 39 1 7.5504 -4.6373 -0.2723 40 1 6.8353 -6.5238 -1.9000 41 1 8.4661 -4.2352 -2.7893 42 1 9.0543 -5.5458 -1.7382 43 1 10.5376 -5.4749 -3.9871 44 1 12.4897 -7.4520 -7.5437 45 1 5.8770 -6.4185 0.1968 46 1 4.6543 -5.4964 -0.7113 47 1 6.1127 -4.5926 1.8154 48 1 4.3886 -5.0234 1.6774 49 1 4.0845 -0.3722 -1.1868 50 1 3.6098 -2.0907 -1.2594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201339283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:43 Heat of formation + Delta-G solvation = -137.718522 kcal Electronic energy + Delta-G solvation = -29948.222432 eV Core-core repulsion = 25781.173818 eV Total energy + Delta-G solvation = -4167.048614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.86695 -40.41016 -39.89211 -38.75107 -36.40365 -35.81800 -33.80356 -33.68026 -33.10074 -32.10600 -31.73719 -28.56786 -27.15278 -26.32558 -24.93464 -24.45351 -23.20686 -22.21663 -21.57610 -21.26586 -20.28539 -19.74672 -18.36475 -17.94322 -17.58553 -17.30578 -16.96158 -16.61943 -16.57358 -16.12574 -15.84988 -15.60925 -15.57669 -15.12388 -15.08078 -14.81145 -14.44015 -14.35644 -14.17814 -13.97006 -13.82626 -13.40366 -13.32056 -13.24107 -13.12734 -12.92284 -12.78770 -12.59930 -12.40594 -12.27581 -12.24949 -12.03898 -11.97256 -11.87043 -11.74137 -11.50565 -11.43862 -11.00164 -10.55409 -10.42414 -10.24497 -9.74823 -9.31570 -8.40559 -6.01899 1.30994 1.36954 1.46225 1.47982 1.90866 1.96990 2.24295 2.71391 2.84150 3.15941 3.24918 3.35394 3.44951 3.76793 3.79583 3.86378 4.00040 4.05616 4.12702 4.16055 4.20831 4.28687 4.32301 4.43374 4.45459 4.50274 4.52045 4.60719 4.61765 4.65413 4.71095 4.78463 4.83895 4.84077 4.85181 4.98039 5.01450 5.15626 5.17026 5.27274 5.37176 5.50146 5.53970 5.92251 5.92755 6.10401 6.31845 6.38226 6.60605 6.89010 7.05850 7.40633 7.98005 8.77171 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.002030 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.536800 B =13786.430509 C =14249.511936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.067 3.933 3 H 0.096 0.904 4 C -0.135 4.135 5 C -0.141 4.141 6 H 0.147 0.853 7 C 0.519 3.481 8 O -0.582 6.582 9 N -0.608 5.608 10 C 0.103 3.897 11 C -0.125 4.125 12 C 0.091 3.909 13 N -0.686 5.686 14 C 0.064 3.936 15 C 0.446 3.554 16 O -0.617 6.617 17 N -0.590 5.590 18 C -0.329 4.329 19 H 0.052 0.948 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.227 1.227 26 C -0.130 4.130 27 C 0.118 3.882 28 C 0.055 3.945 29 O -0.401 6.401 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.344 0.656 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.391 0.609 44 H 0.279 0.721 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.100 0.900 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 22.210 23.395 33.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 H 0.114 0.886 4 C -0.173 4.173 5 C -0.162 4.162 6 H 0.164 0.836 7 C 0.308 3.692 8 O -0.462 6.462 9 N -0.340 5.340 10 C -0.019 4.019 11 C -0.164 4.164 12 C -0.018 4.018 13 N -0.319 5.319 14 C -0.068 4.068 15 C 0.234 3.766 16 O -0.502 6.502 17 N -0.232 5.232 18 C -0.459 4.459 19 H 0.070 0.930 20 C -0.217 4.217 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.181 1.181 24 H -0.202 1.202 25 H -0.150 1.150 26 C -0.169 4.169 27 C -0.005 4.005 28 C -0.022 4.022 29 O -0.321 6.321 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.163 0.837 41 H 0.134 0.866 42 H 0.097 0.903 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.110 0.890 48 H 0.094 0.906 49 H 0.118 0.882 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.933 21.713 22.659 33.575 hybrid contribution 1.298 -0.943 0.207 1.617 sum -10.635 20.770 22.865 32.670 Atomic orbital electron populations 1.21811 0.92743 1.02414 1.03558 1.23393 0.95930 0.95918 0.83677 0.88630 1.23157 0.93749 1.01029 0.99365 1.22810 1.01619 0.94026 0.97749 0.83567 1.20849 0.80214 0.89113 0.79021 1.90666 1.48430 1.66625 1.40522 1.48233 1.20157 1.15013 1.50606 1.22047 0.93533 0.95659 0.90651 1.21898 1.02314 0.94737 0.97481 1.21580 0.97378 0.93634 0.89210 1.60093 1.23414 1.12617 1.35781 1.21680 0.90926 1.00440 0.93721 1.21094 0.81881 0.85938 0.87643 1.90554 1.47393 1.44370 1.67874 1.42021 1.13678 1.40192 1.27309 1.18994 0.99861 1.21305 1.05718 0.92953 1.26182 1.00073 0.99417 0.95982 1.69818 1.24544 1.41531 1.21739 0.85331 0.77824 0.79143 0.78985 1.18130 1.20175 1.15041 1.22031 0.98897 0.99531 0.96406 1.21569 1.02020 0.80880 0.96033 1.23382 0.85152 1.01592 0.92106 1.88918 1.28444 1.74385 1.40353 0.93422 0.88901 0.91640 0.91447 0.87548 0.87464 0.88265 0.89100 0.92721 0.91320 0.83689 0.86566 0.90266 0.77370 0.91173 0.89829 0.92872 0.89030 0.90589 0.88182 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 71.98 0.70 -1.15 16 2 C 0.07 0.90 3.97 31.28 0.12 1.03 16 3 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.14 -1.88 5.94 31.90 0.19 -1.69 16 5 C -0.14 -1.78 2.54 -10.55 -0.03 -1.81 16 6 H 0.15 0.79 8.01 -2.39 -0.02 0.77 16 7 C 0.52 10.09 6.92 87.65 0.61 10.70 16 8 O -0.58 -16.35 14.87 -3.01 -0.04 -16.40 16 9 N -0.61 -9.49 2.94 -819.68 -2.41 -11.90 16 10 C 0.10 1.01 5.51 86.22 0.47 1.48 16 11 C -0.13 -1.91 5.55 30.53 0.17 -1.74 16 12 C 0.09 1.64 2.46 44.94 0.11 1.75 16 13 N -0.69 -18.69 5.93 -495.46 -2.94 -21.63 16 14 C 0.06 1.79 5.96 85.55 0.51 2.30 16 15 C 0.45 19.60 7.82 87.65 0.69 20.28 16 16 O -0.62 -34.12 15.78 -3.07 -0.05 -34.17 16 17 N -0.59 -27.13 5.09 -306.99 -1.56 -28.69 16 18 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 19 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 20 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 21 N -0.94 -56.27 13.96 21.66 0.30 -55.97 16 22 Si 0.97 37.78 27.74 68.60 1.90 39.68 16 23 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 24 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 25 H -0.23 -7.27 6.52 99.48 0.65 -6.63 16 26 C -0.13 -2.38 5.36 30.68 0.16 -2.21 16 27 C 0.12 1.93 6.44 86.37 0.56 2.49 16 28 C 0.05 0.77 5.56 72.35 0.40 1.17 16 29 O -0.40 -7.89 11.22 -148.98 -1.67 -9.57 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.38 6.84 -2.39 -0.02 1.37 16 34 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 0.66 4.37 -2.39 -0.01 0.65 16 36 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 1.22 7.42 -2.39 -0.02 1.20 16 38 H 0.05 1.11 7.63 -2.38 -0.02 1.09 16 39 H 0.07 0.96 7.80 -2.39 -0.02 0.95 16 40 H 0.34 10.37 8.03 -89.69 -0.72 9.65 16 41 H 0.12 2.61 7.41 -2.39 -0.02 2.59 16 42 H 0.08 1.72 8.06 -2.39 -0.02 1.70 16 43 H 0.39 14.54 5.76 -92.71 -0.53 14.01 16 44 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 45 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 46 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.08 1.57 7.00 -2.39 -0.02 1.55 16 49 H 0.10 0.81 7.65 -2.39 -0.02 0.79 16 50 H 0.07 1.29 6.42 -2.39 -0.02 1.27 16 Total: -1.00 -85.57 388.95 -0.84 -86.41 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -0.35 Total: 38.49 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 5.98 Total: 13.74 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.61 Total: -118.19 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -1.77 Total: -60.14 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.90 Total: 39.68 kcal Total: -85.57 -0.84 -86.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201339283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.308 kcal (2) G-P(sol) polarization free energy of solvation -85.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds