Wall clock time and date at job start Tue Mar 31 2020 23:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.33601 * 2 1 4 4 C 1.54475 * 110.37146 * 237.62800 * 2 1 3 5 5 C 1.54512 * 104.06386 * 217.19375 * 4 2 1 6 6 C 1.54474 * 104.06131 * 0.02562 * 5 4 2 7 7 H 1.09006 * 110.37557 * 265.14427 * 6 5 4 8 8 C 1.50705 * 110.37366 * 142.81134 * 6 5 4 9 9 O 1.21284 * 119.99799 * 248.16405 * 8 6 5 10 10 N 1.34771 * 120.00178 * 68.16334 * 8 6 5 11 11 C 1.46928 * 120.62781 * 359.72318 * 10 8 6 12 12 C 1.52763 * 109.00933 * 233.58228 * 11 10 8 13 13 C 1.53042 * 109.37940 * 305.59119 * 12 11 10 14 14 N 1.46902 * 109.44634 * 181.25068 * 13 12 11 15 15 C 1.46906 * 111.00025 * 84.93537 * 14 13 12 16 16 C 1.50695 * 109.46935 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00442 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99746 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99939 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99776 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99813 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99821 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00221 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46870 * 89.99771 * 23 21 19 25 25 H 1.48497 * 109.46907 * 209.99924 * 23 21 19 26 26 H 1.48499 * 109.47077 * 329.99709 * 23 21 19 27 27 C 1.53043 * 109.54238 * 61.23923 * 13 12 11 28 28 C 1.46927 * 120.63409 * 179.97438 * 10 8 6 29 29 O 1.44426 * 110.36818 * 122.25125 * 2 1 3 30 30 H 1.09004 * 109.47015 * 299.21233 * 1 2 3 31 31 H 1.09000 * 109.46628 * 59.20197 * 1 2 3 32 32 H 1.08992 * 109.47605 * 179.20302 * 1 2 3 33 33 H 1.09002 * 110.51057 * 335.83723 * 4 2 1 34 34 H 1.08996 * 110.51289 * 98.54690 * 4 2 1 35 35 H 1.08999 * 110.51561 * 118.64366 * 5 4 2 36 36 H 1.09000 * 110.51089 * 241.21647 * 5 4 2 37 37 H 1.09000 * 109.58580 * 353.41589 * 11 10 8 38 38 H 1.08998 * 109.58888 * 113.84466 * 11 10 8 39 39 H 1.08990 * 109.56734 * 185.55087 * 12 11 10 40 40 H 1.09005 * 109.35564 * 65.49653 * 12 11 10 41 41 H 1.09000 * 109.46074 * 301.21570 * 13 12 11 42 42 H 1.00897 * 111.00152 * 208.89385 * 14 13 12 43 43 H 1.08995 * 109.47252 * 300.00221 * 15 14 13 44 44 H 1.09000 * 109.46941 * 60.00135 * 15 14 13 45 45 H 0.96991 * 119.99992 * 0.02562 * 18 16 15 46 46 H 0.96997 * 119.99905 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.49826 * 178.68026 * 27 13 12 48 48 H 1.09000 * 109.49725 * 58.58258 * 27 13 12 49 49 H 1.08998 * 109.58786 * 246.15737 * 28 10 8 50 50 H 1.08997 * 109.58041 * 6.44354 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0678 -0.7754 -1.2231 5 6 3.3178 -1.5065 -0.6842 6 6 3.3869 -1.0869 0.8008 7 1 4.0520 -0.2320 0.9231 8 6 3.8526 -2.2409 1.6509 9 8 3.0887 -2.7636 2.4348 10 7 5.1177 -2.6921 1.5402 11 6 6.0527 -2.0731 0.5908 12 6 6.6428 -3.1596 -0.3065 13 6 7.2630 -4.2553 0.5635 14 7 7.8573 -5.2861 -0.2981 15 6 9.2218 -4.9160 -0.6973 16 6 9.7976 -5.9951 -1.5777 17 8 9.1363 -6.9757 -1.8465 18 7 11.0475 -5.8705 -2.0663 19 6 11.5716 -6.8524 -2.8668 20 1 10.9827 -7.7256 -3.1062 21 6 12.8600 -6.7237 -3.3710 22 7 13.3625 -7.6652 -4.1379 23 14 13.8782 -5.2132 -2.9575 24 1 14.6555 -5.4645 -1.7174 25 1 14.8109 -4.9237 -4.0762 26 1 12.9777 -4.0507 -2.7503 27 6 6.1798 -4.8867 1.4411 28 6 5.5864 -3.8158 2.3625 29 8 2.0327 -0.7225 1.1451 30 1 -0.3633 0.5016 0.8970 31 1 -0.3632 0.5262 -0.8828 32 1 -0.3634 -1.0275 -0.0143 33 1 1.3275 -1.4936 -1.5756 34 1 2.3430 -0.0862 -2.0214 35 1 3.1955 -2.5862 -0.7703 36 1 4.2106 -1.1805 -1.2178 37 1 5.5224 -1.3437 -0.0214 38 1 6.8556 -1.5793 1.1381 39 1 7.4101 -2.7263 -0.9479 40 1 5.8522 -3.5881 -0.9225 41 1 8.0366 -3.8215 1.1972 42 1 7.8450 -6.1874 0.1553 43 1 9.1972 -3.9741 -1.2452 44 1 9.8424 -4.8032 0.1916 45 1 11.5765 -5.0865 -1.8510 46 1 14.2618 -7.5752 -4.4901 47 1 6.6177 -5.6827 2.0433 48 1 5.3937 -5.2990 0.8085 49 1 6.3506 -3.4667 3.0569 50 1 4.7490 -4.2342 2.9208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202575675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:41 Heat of formation + Delta-G solvation = -107.896959 kcal Electronic energy + Delta-G solvation = -29856.346279 eV Core-core repulsion = 25690.590825 eV Total energy + Delta-G solvation = -4165.755454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.01756 -39.44164 -38.56249 -37.66543 -35.26469 -33.96002 -32.77597 -32.66999 -31.71849 -31.18419 -31.12521 -27.66566 -26.66605 -24.66840 -23.81190 -23.29876 -22.50047 -21.53631 -20.96251 -19.51265 -19.21971 -18.33721 -17.78280 -16.86499 -16.73757 -16.22203 -15.75553 -15.48129 -15.31444 -15.08322 -14.86126 -14.72569 -14.28851 -14.10394 -14.06344 -13.92217 -13.32146 -13.23709 -13.02213 -12.91755 -12.74520 -12.59440 -12.40019 -12.30319 -12.18220 -12.06675 -11.91207 -11.60622 -11.48921 -11.32444 -11.23256 -11.18770 -10.92323 -10.64184 -10.62745 -10.37204 -10.00571 -9.83969 -9.60609 -8.99515 -8.62219 -8.24749 -8.19129 -6.33956 -3.85603 2.27679 2.41497 2.99021 3.03344 3.12049 3.47441 3.70306 3.92454 3.98243 4.07230 4.10760 4.32250 4.41050 4.46784 4.57232 4.63703 4.71802 4.75097 4.80036 4.91320 4.98357 5.01322 5.03240 5.16823 5.20075 5.21352 5.25980 5.34468 5.37178 5.44587 5.51735 5.52560 5.56045 5.61530 5.62763 5.72623 5.74762 5.75962 5.87379 5.94388 6.12035 6.18504 6.39253 7.03126 7.06619 7.51624 7.55412 7.86683 8.11451 8.56593 8.91999 9.39227 9.79344 10.79148 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.001992 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.482183 B =14055.584077 C =14571.229899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 H 0.072 0.928 4 C -0.150 4.150 5 C -0.146 4.146 6 C 0.060 3.940 7 H 0.093 0.907 8 C 0.522 3.478 9 O -0.522 6.522 10 N -0.608 5.608 11 C 0.100 3.900 12 C -0.125 4.125 13 C 0.088 3.912 14 N -0.665 5.665 15 C 0.049 3.951 16 C 0.449 3.551 17 O -0.564 6.564 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.136 4.136 28 C 0.116 3.884 29 O -0.343 6.343 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.353 0.647 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.916 20.089 10.117 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 H 0.090 0.910 4 C -0.188 4.188 5 C -0.184 4.184 6 C -0.002 4.002 7 H 0.111 0.889 8 C 0.309 3.691 9 O -0.397 6.397 10 N -0.343 5.343 11 C -0.023 4.023 12 C -0.164 4.164 13 C -0.022 4.022 14 N -0.298 5.298 15 C -0.084 4.084 16 C 0.235 3.765 17 O -0.446 6.446 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.175 4.175 28 C -0.006 4.006 29 O -0.261 6.261 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.173 0.827 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.010 19.228 9.856 28.779 hybrid contribution 1.842 1.085 0.698 2.249 sum -17.168 20.313 10.554 28.614 Atomic orbital electron populations 1.21800 0.92789 1.03234 1.02554 1.23086 0.95817 0.95370 0.84863 0.91034 1.23028 0.97469 0.99907 0.98349 1.23010 0.99470 1.02619 0.93308 1.22798 0.87123 0.96139 0.94104 0.88949 1.20188 0.81437 0.84288 0.83179 1.90720 1.53332 1.58259 1.37356 1.48033 1.10929 1.34573 1.40809 1.21896 0.92976 0.95999 0.91417 1.21880 1.01251 0.95377 0.97885 1.21481 0.95354 0.92899 0.92462 1.60072 1.19292 1.05075 1.45325 1.21752 0.89406 0.98917 0.98348 1.19716 0.82622 0.88819 0.85385 1.90571 1.59621 1.32469 1.61925 1.42211 1.13527 1.20953 1.46315 1.19434 0.98735 1.01077 1.24171 0.86289 1.25047 0.96762 0.97601 0.96790 1.69623 1.16811 1.32888 1.32745 0.86665 0.80915 0.82632 0.79120 1.19666 1.20158 1.19504 1.22112 0.99150 0.97840 0.98354 1.21601 0.99951 0.86219 0.92836 1.89280 1.24881 1.74301 1.37642 0.91701 0.90953 0.91572 0.90054 0.89961 0.89834 0.89166 0.89410 0.91023 0.90295 0.90400 0.93754 0.82664 0.89581 0.93779 0.79725 0.91597 0.90383 0.90270 0.91291 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.52 37.16 0.35 -0.57 16 2 C 0.07 0.48 3.92 -25.95 -0.10 0.38 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.15 -0.91 6.63 -25.16 -0.17 -1.08 16 5 C -0.15 -1.02 5.67 -25.16 -0.14 -1.16 16 6 C 0.06 0.53 2.74 -27.11 -0.07 0.46 16 7 H 0.09 0.61 7.69 -51.93 -0.40 0.21 16 8 C 0.52 6.03 6.99 -10.99 -0.08 5.96 16 9 O -0.52 -8.27 15.97 -13.62 -0.22 -8.48 16 10 N -0.61 -5.66 2.98 -173.00 -0.52 -6.18 16 11 C 0.10 0.69 6.00 -3.93 -0.02 0.67 16 12 C -0.13 -1.11 5.57 -26.83 -0.15 -1.26 16 13 C 0.09 0.91 2.46 -67.67 -0.17 0.74 16 14 N -0.66 -9.46 5.93 -107.94 -0.64 -10.10 16 15 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 16 C 0.45 9.87 7.82 -10.99 -0.09 9.79 16 17 O -0.56 -14.88 15.78 5.55 0.09 -14.79 16 18 N -0.59 -13.72 5.09 -10.96 -0.06 -13.78 16 19 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 20 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 22 N -0.88 -25.47 13.96 55.50 0.77 -24.69 16 23 Si 0.88 18.96 27.74 -169.99 -4.71 14.25 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.27 -5.24 6.52 56.52 0.37 -4.88 16 27 C -0.14 -1.30 5.36 -26.59 -0.14 -1.44 16 28 C 0.12 1.08 6.44 -3.69 -0.02 1.05 16 29 O -0.34 -3.81 10.61 -54.41 -0.58 -4.39 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.08 0.51 7.86 -51.93 -0.41 0.10 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.70 7.86 -51.93 -0.41 0.30 16 36 H 0.09 0.44 6.71 -51.93 -0.35 0.09 16 37 H 0.09 0.45 4.14 -51.93 -0.22 0.24 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.68 7.42 -51.93 -0.39 0.30 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.04 0.43 7.80 -51.93 -0.40 0.02 16 42 H 0.35 5.32 8.03 -39.29 -0.32 5.00 16 43 H 0.09 1.17 7.41 -51.93 -0.38 0.79 16 44 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 45 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 48 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.10 1.01 7.00 -51.93 -0.36 0.65 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -35.79 392.34 -9.09 -44.88 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -8.07 Total: 10.78 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.08 Total: 6.59 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.44 Total: -54.75 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.71 Total: -27.66 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.79 -9.09 -44.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202575675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.015 kcal (2) G-P(sol) polarization free energy of solvation -35.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds