Wall clock time and date at job start Tue Mar 31 2020 23:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.33601 * 2 1 4 4 C 1.54475 * 110.37146 * 237.62800 * 2 1 3 5 5 C 1.54512 * 104.06386 * 217.19375 * 4 2 1 6 6 C 1.54474 * 104.06131 * 0.02562 * 5 4 2 7 7 H 1.09006 * 110.37557 * 265.14427 * 6 5 4 8 8 C 1.50705 * 110.37366 * 142.81134 * 6 5 4 9 9 O 1.21284 * 119.99799 * 248.16405 * 8 6 5 10 10 N 1.34771 * 120.00178 * 68.16334 * 8 6 5 11 11 C 1.46928 * 120.62781 * 359.72318 * 10 8 6 12 12 C 1.52763 * 109.00933 * 233.58228 * 11 10 8 13 13 C 1.53042 * 109.37940 * 305.59119 * 12 11 10 14 14 N 1.46902 * 109.44634 * 181.25068 * 13 12 11 15 15 C 1.46906 * 111.00025 * 84.93537 * 14 13 12 16 16 C 1.50695 * 109.46935 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00442 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99746 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99939 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99776 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99813 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99821 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00221 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46870 * 89.99771 * 23 21 19 25 25 H 1.48497 * 109.46907 * 209.99924 * 23 21 19 26 26 H 1.48499 * 109.47077 * 329.99709 * 23 21 19 27 27 C 1.53043 * 109.54238 * 61.23923 * 13 12 11 28 28 C 1.46927 * 120.63409 * 179.97438 * 10 8 6 29 29 O 1.44426 * 110.36818 * 122.25125 * 2 1 3 30 30 H 1.09004 * 109.47015 * 299.21233 * 1 2 3 31 31 H 1.09000 * 109.46628 * 59.20197 * 1 2 3 32 32 H 1.08992 * 109.47605 * 179.20302 * 1 2 3 33 33 H 1.09002 * 110.51057 * 335.83723 * 4 2 1 34 34 H 1.08996 * 110.51289 * 98.54690 * 4 2 1 35 35 H 1.08999 * 110.51561 * 118.64366 * 5 4 2 36 36 H 1.09000 * 110.51089 * 241.21647 * 5 4 2 37 37 H 1.09000 * 109.58580 * 353.41589 * 11 10 8 38 38 H 1.08998 * 109.58888 * 113.84466 * 11 10 8 39 39 H 1.08990 * 109.56734 * 185.55087 * 12 11 10 40 40 H 1.09005 * 109.35564 * 65.49653 * 12 11 10 41 41 H 1.09000 * 109.46074 * 301.21570 * 13 12 11 42 42 H 1.00897 * 111.00152 * 208.89385 * 14 13 12 43 43 H 1.08995 * 109.47252 * 300.00221 * 15 14 13 44 44 H 1.09000 * 109.46941 * 60.00135 * 15 14 13 45 45 H 0.96991 * 119.99992 * 0.02562 * 18 16 15 46 46 H 0.96997 * 119.99905 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.49826 * 178.68026 * 27 13 12 48 48 H 1.09000 * 109.49725 * 58.58258 * 27 13 12 49 49 H 1.08998 * 109.58786 * 246.15737 * 28 10 8 50 50 H 1.08997 * 109.58041 * 6.44354 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0678 -0.7754 -1.2231 5 6 3.3178 -1.5065 -0.6842 6 6 3.3869 -1.0869 0.8008 7 1 4.0520 -0.2320 0.9231 8 6 3.8526 -2.2409 1.6509 9 8 3.0887 -2.7636 2.4348 10 7 5.1177 -2.6921 1.5402 11 6 6.0527 -2.0731 0.5908 12 6 6.6428 -3.1596 -0.3065 13 6 7.2630 -4.2553 0.5635 14 7 7.8573 -5.2861 -0.2981 15 6 9.2218 -4.9160 -0.6973 16 6 9.7976 -5.9951 -1.5777 17 8 9.1363 -6.9757 -1.8465 18 7 11.0475 -5.8705 -2.0663 19 6 11.5716 -6.8524 -2.8668 20 1 10.9827 -7.7256 -3.1062 21 6 12.8600 -6.7237 -3.3710 22 7 13.3625 -7.6652 -4.1379 23 14 13.8782 -5.2132 -2.9575 24 1 14.6555 -5.4645 -1.7174 25 1 14.8109 -4.9237 -4.0762 26 1 12.9777 -4.0507 -2.7503 27 6 6.1798 -4.8867 1.4411 28 6 5.5864 -3.8158 2.3625 29 8 2.0327 -0.7225 1.1451 30 1 -0.3633 0.5016 0.8970 31 1 -0.3632 0.5262 -0.8828 32 1 -0.3634 -1.0275 -0.0143 33 1 1.3275 -1.4936 -1.5756 34 1 2.3430 -0.0862 -2.0214 35 1 3.1955 -2.5862 -0.7703 36 1 4.2106 -1.1805 -1.2178 37 1 5.5224 -1.3437 -0.0214 38 1 6.8556 -1.5793 1.1381 39 1 7.4101 -2.7263 -0.9479 40 1 5.8522 -3.5881 -0.9225 41 1 8.0366 -3.8215 1.1972 42 1 7.8450 -6.1874 0.1553 43 1 9.1972 -3.9741 -1.2452 44 1 9.8424 -4.8032 0.1916 45 1 11.5765 -5.0865 -1.8510 46 1 14.2618 -7.5752 -4.4901 47 1 6.6177 -5.6827 2.0433 48 1 5.3937 -5.2990 0.8085 49 1 6.3506 -3.4667 3.0569 50 1 4.7490 -4.2342 2.9208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202575675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:40 Heat of formation + Delta-G solvation = -135.786176 kcal Electronic energy + Delta-G solvation = -29857.555646 eV Core-core repulsion = 25690.590825 eV Total energy + Delta-G solvation = -4166.964822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.75103 -40.40874 -39.93652 -38.68385 -36.39093 -35.80947 -33.75985 -33.46130 -33.26305 -32.08690 -31.78971 -28.73640 -27.67656 -26.03985 -24.70723 -24.15755 -23.22185 -22.06109 -21.75432 -21.26900 -20.32989 -19.92984 -18.50339 -17.80419 -17.47095 -17.40672 -16.95428 -16.57748 -16.44796 -16.04659 -15.94650 -15.58788 -15.46460 -15.09263 -14.86457 -14.82373 -14.70156 -14.32580 -14.19485 -13.88808 -13.84162 -13.53748 -13.34107 -13.21659 -13.15106 -12.92357 -12.75927 -12.64676 -12.44981 -12.39658 -12.19577 -11.97066 -11.85819 -11.84506 -11.54168 -11.49585 -11.42437 -11.03583 -10.62009 -10.41212 -10.23701 -9.76135 -9.30346 -8.39928 -6.01212 1.31562 1.37573 1.45298 1.46744 1.72236 1.98071 2.24857 2.72200 2.90325 3.16731 3.29648 3.38044 3.55382 3.76829 3.78201 3.89140 3.94116 4.07830 4.12799 4.16571 4.18365 4.27777 4.32821 4.42724 4.46267 4.51551 4.52775 4.58123 4.63361 4.69464 4.76646 4.78655 4.85433 4.92632 4.94275 4.99953 5.03747 5.15732 5.16883 5.25787 5.38893 5.48060 5.54720 5.82886 5.93213 6.11461 6.29828 6.39317 6.61399 6.89833 7.05919 7.41596 7.98967 8.77796 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.001992 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.482183 B =14055.584077 C =14571.229899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 H 0.093 0.907 4 C -0.146 4.146 5 C -0.142 4.142 6 C 0.059 3.941 7 H 0.124 0.876 8 C 0.514 3.486 9 O -0.579 6.579 10 N -0.603 5.603 11 C 0.101 3.899 12 C -0.123 4.123 13 C 0.090 3.910 14 N -0.685 5.685 15 C 0.064 3.936 16 C 0.447 3.553 17 O -0.617 6.617 18 N -0.590 5.590 19 C -0.329 4.329 20 H 0.053 0.947 21 C -0.018 4.018 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.258 1.258 25 H -0.277 1.277 26 H -0.227 1.227 27 C -0.128 4.128 28 C 0.118 3.882 29 O -0.382 6.382 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.344 0.656 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.083 0.917 48 H 0.055 0.945 49 H 0.092 0.908 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.370 24.981 10.727 31.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.002 3.998 3 H 0.111 0.889 4 C -0.184 4.184 5 C -0.180 4.180 6 C -0.002 4.002 7 H 0.141 0.859 8 C 0.302 3.698 9 O -0.458 6.458 10 N -0.337 5.337 11 C -0.020 4.020 12 C -0.161 4.161 13 C -0.019 4.019 14 N -0.317 5.317 15 C -0.068 4.068 16 C 0.235 3.765 17 O -0.502 6.502 18 N -0.232 5.232 19 C -0.459 4.459 20 H 0.071 0.929 21 C -0.216 4.216 22 N -0.577 5.577 23 Si 0.787 3.213 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.150 1.150 27 C -0.167 4.167 28 C -0.005 4.005 29 O -0.302 6.302 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.163 0.837 43 H 0.135 0.865 44 H 0.096 0.904 45 H 0.226 0.774 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.074 0.926 49 H 0.110 0.890 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.460 24.156 10.462 31.588 hybrid contribution 1.253 -0.586 0.492 1.468 sum -16.207 23.570 10.954 30.630 Atomic orbital electron populations 1.21840 0.92735 1.02449 1.03418 1.23349 0.96068 0.96159 0.84212 0.88935 1.23047 0.96776 1.00036 0.98533 1.23028 1.01229 1.01378 0.92394 1.22985 0.86905 0.95939 0.94325 0.85858 1.20837 0.81528 0.84679 0.82754 1.90688 1.54942 1.60274 1.39938 1.48150 1.10727 1.34112 1.40684 1.22111 0.93248 0.95551 0.91132 1.21868 1.01007 0.95341 0.97923 1.21592 0.95629 0.92200 0.92480 1.60105 1.18929 1.05770 1.46940 1.21684 0.90045 0.96751 0.98311 1.21095 0.81628 0.89393 0.84398 1.90554 1.60871 1.35216 1.63519 1.42025 1.14359 1.20701 1.46146 1.18997 0.99211 1.01047 1.26599 0.92931 1.26169 0.97687 1.02014 0.95740 1.69816 1.17652 1.35984 1.34202 0.85338 0.78818 0.78125 0.79053 1.18218 1.20204 1.14977 1.22018 0.98460 0.98130 0.98099 1.21577 0.99656 0.86299 0.92972 1.89254 1.26172 1.75067 1.39690 0.92287 0.88570 0.93231 0.90946 0.87233 0.92137 0.86235 0.87199 0.88424 0.88958 0.92316 0.91433 0.83718 0.86463 0.90365 0.77381 0.91192 0.89822 0.92642 0.89021 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.52 71.98 0.69 -1.07 16 2 C 0.06 0.75 3.92 31.10 0.12 0.88 16 3 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.15 -1.46 6.63 31.61 0.21 -1.25 16 5 C -0.14 -1.67 5.67 31.61 0.18 -1.49 16 6 C 0.06 0.95 2.74 30.35 0.08 1.03 16 7 H 0.12 1.17 7.69 -2.38 -0.02 1.15 16 8 C 0.51 11.61 6.99 87.66 0.61 12.22 16 9 O -0.58 -19.17 15.97 15.29 0.24 -18.92 16 10 N -0.60 -10.11 2.98 -819.66 -2.44 -12.55 16 11 C 0.10 0.98 6.00 86.22 0.52 1.50 16 12 C -0.12 -1.73 5.57 30.53 0.17 -1.56 16 13 C 0.09 1.57 2.46 44.94 0.11 1.68 16 14 N -0.68 -18.10 5.93 -495.43 -2.94 -21.04 16 15 C 0.06 1.74 5.96 85.55 0.51 2.25 16 16 C 0.45 19.31 7.82 87.65 0.69 20.00 16 17 O -0.62 -33.65 15.78 -3.06 -0.05 -33.69 16 18 N -0.59 -26.81 5.09 -306.98 -1.56 -28.37 16 19 C -0.33 -19.00 10.16 84.04 0.85 -18.15 16 20 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 21 C -0.02 -0.97 5.50 84.92 0.47 -0.50 16 22 N -0.94 -55.93 13.96 21.66 0.30 -55.63 16 23 Si 0.97 37.45 27.74 68.60 1.90 39.35 16 24 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 25 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 26 H -0.23 -7.16 6.52 99.48 0.65 -6.51 16 27 C -0.13 -2.33 5.36 30.69 0.16 -2.17 16 28 C 0.12 2.04 6.44 86.38 0.56 2.60 16 29 O -0.38 -8.33 10.61 -130.64 -1.39 -9.71 16 30 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.73 8.12 -2.39 -0.02 0.72 16 33 H 0.07 0.84 7.86 -2.39 -0.02 0.83 16 34 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.99 7.86 -2.39 -0.02 0.98 16 36 H 0.12 0.66 6.71 -2.39 -0.02 0.64 16 37 H 0.11 0.60 4.14 -2.39 -0.01 0.59 16 38 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 1.12 7.42 -2.39 -0.02 1.10 16 40 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.07 0.93 7.80 -2.39 -0.02 0.91 16 42 H 0.34 10.14 8.03 -89.70 -0.72 9.42 16 43 H 0.12 2.53 7.41 -2.39 -0.02 2.51 16 44 H 0.08 1.67 8.05 -2.39 -0.02 1.65 16 45 H 0.39 14.34 5.76 -92.71 -0.53 13.81 16 46 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 47 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 48 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.07 1.63 7.00 -2.39 -0.02 1.61 16 Total: -1.00 -87.53 392.34 -0.35 -87.88 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.35 Total: 36.70 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 5.93 Total: 15.98 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -6.64 Total: -117.59 kcal Atomic # 8 Polarization: -61.14 SS G_CDS: -1.19 Total: -62.33 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 1.90 Total: 39.35 kcal Total: -87.53 -0.35 -87.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202575675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.902 kcal (2) G-P(sol) polarization free energy of solvation -87.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds