Wall clock time and date at job start Tue Mar 31 2020 23:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 110.32729 * 2 1 4 4 O 1.44418 * 110.37430 * 237.74767 * 2 1 3 5 5 C 1.44420 * 105.27557 * 200.65343 * 4 2 1 6 6 C 1.54477 * 104.80496 * 40.51355 * 5 4 2 7 7 C 1.54486 * 110.37151 * 122.36548 * 2 1 3 8 8 H 1.09004 * 110.50991 * 261.45632 * 7 2 1 9 9 C 1.50699 * 110.50904 * 24.16850 * 7 2 1 10 10 O 1.21284 * 119.99940 * 80.15212 * 9 7 2 11 11 N 1.34778 * 119.99856 * 260.14083 * 9 7 2 12 12 C 1.46919 * 120.63132 * 5.02657 * 11 9 7 13 13 C 1.53625 * 108.54515 * 126.36489 * 12 11 9 14 14 C 1.53035 * 109.24082 * 54.85376 * 13 12 11 15 15 N 1.46906 * 109.45791 * 178.48999 * 14 13 12 16 16 C 1.46897 * 111.00126 * 275.06780 * 15 14 13 17 17 C 1.50700 * 109.47076 * 180.02562 * 16 15 14 18 18 O 1.21296 * 119.99848 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99833 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99659 * 179.97438 * 19 17 16 21 21 H 1.08006 * 120.00322 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99780 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99865 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99849 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47326 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.47234 * 119.99595 * 24 22 20 27 27 H 1.48502 * 109.47365 * 239.99586 * 24 22 20 28 28 C 1.53045 * 109.53842 * 298.51114 * 14 13 12 29 29 C 1.46930 * 120.62692 * 185.29996 * 11 9 7 30 30 H 1.09008 * 109.46543 * 178.50253 * 1 2 3 31 31 H 1.08996 * 109.47006 * 298.49952 * 1 2 3 32 32 H 1.08998 * 109.47004 * 58.50276 * 1 2 3 33 33 H 1.08999 * 110.37389 * 159.34895 * 5 4 2 34 34 H 1.09006 * 110.37672 * 281.68071 * 5 4 2 35 35 H 1.09004 * 110.51081 * 94.66501 * 6 5 4 36 36 H 1.08995 * 110.51691 * 217.37780 * 6 5 4 37 37 H 1.09002 * 109.59019 * 246.19782 * 12 11 9 38 38 H 1.09004 * 109.59112 * 6.62060 * 12 11 9 39 39 H 1.09001 * 109.63424 * 294.85991 * 13 12 11 40 40 H 1.09006 * 109.45625 * 174.74085 * 13 12 11 41 41 H 1.08994 * 109.44824 * 58.52959 * 14 13 12 42 42 H 1.00905 * 110.99629 * 151.11057 * 15 14 13 43 43 H 1.09005 * 109.47211 * 300.00246 * 16 15 14 44 44 H 1.08995 * 109.46923 * 59.99952 * 16 15 14 45 45 H 0.96995 * 120.00043 * 359.97438 * 19 17 16 46 46 H 0.97003 * 119.99907 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.49310 * 301.41198 * 28 14 13 48 48 H 1.08996 * 109.49354 * 181.32000 * 28 14 13 49 49 H 1.08995 * 109.58553 * 353.37339 * 29 11 9 50 50 H 1.09001 * 109.58194 * 113.66072 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 8 2.0328 -0.7225 -1.1449 5 6 3.3874 -1.0862 -0.8005 6 6 3.3179 -1.5062 0.6844 7 6 2.0678 -0.7753 1.2233 8 1 2.3429 -0.0859 2.0215 9 6 1.0444 -1.7683 1.7106 10 8 0.9174 -2.8345 1.1466 11 7 0.2704 -1.4717 2.7734 12 6 0.3350 -0.1441 3.3992 13 6 -1.0858 0.4369 3.4604 14 6 -2.0048 -0.5528 4.1802 15 7 -3.3569 0.0138 4.2734 16 6 -3.4815 0.8884 5.4470 17 6 -4.8789 1.4492 5.5094 18 8 -5.6910 1.1501 4.6595 19 7 -5.2259 2.2840 6.5091 20 6 -6.4971 2.7945 6.5656 21 1 -7.2202 2.5282 5.8088 22 6 -6.8547 3.6556 7.5959 23 7 -5.9748 3.9800 8.5163 24 14 -8.5868 4.3507 7.6733 25 1 -9.3790 3.8344 6.5282 26 1 -9.2296 3.9376 8.9467 27 1 -8.5288 5.8331 7.6062 28 6 -2.0553 -1.8668 3.3971 29 6 -0.6496 -2.4720 3.3318 30 1 -0.3633 -1.0274 -0.0269 31 1 -0.3633 0.4903 0.9031 32 1 -0.3633 0.5369 -0.8762 33 1 3.7243 -1.9206 -1.4156 34 1 4.0526 -0.2312 -0.9223 35 1 3.1957 -2.5860 0.7706 36 1 4.2109 -1.1783 1.2164 37 1 0.7395 -0.2345 4.4074 38 1 0.9733 0.5096 2.8046 39 1 -1.4556 0.6076 2.4494 40 1 -1.0690 1.3806 4.0058 41 1 -1.6205 -0.7419 5.1825 42 1 -4.0542 -0.7154 4.2901 43 1 -3.2802 0.3140 6.3513 44 1 -2.7647 1.7058 5.3687 45 1 -4.5764 2.5234 7.1885 46 1 -6.2245 4.5808 9.2358 47 1 -2.4160 -1.6744 2.3867 48 1 -2.7282 -2.5629 3.8977 49 1 -0.6612 -3.3548 2.6926 50 1 -0.3223 -2.7504 4.3336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203059444.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:20 Heat of formation + Delta-G solvation = -113.288644 kcal Electronic energy + Delta-G solvation = -30286.913488 eV Core-core repulsion = 26120.924232 eV Total energy + Delta-G solvation = -4165.989255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.20743 -39.29023 -38.36107 -37.53688 -35.16009 -33.89999 -33.11244 -31.87878 -31.40196 -31.15912 -30.99065 -27.27136 -26.48454 -24.78115 -23.81728 -23.49632 -22.45530 -22.01584 -20.42769 -19.29817 -18.90254 -17.99763 -17.89429 -16.61943 -16.46397 -16.04912 -15.85395 -15.54776 -15.37849 -15.27570 -14.90417 -14.54006 -14.22028 -14.03121 -13.84604 -13.74979 -13.56637 -13.17296 -12.96536 -12.65366 -12.54309 -12.47416 -12.27267 -12.12330 -11.96698 -11.64274 -11.59958 -11.46199 -11.38858 -11.34826 -11.29308 -11.09734 -10.90626 -10.55470 -10.36186 -10.24618 -10.19771 -9.83712 -9.54494 -8.92491 -8.48508 -8.11827 -7.98687 -6.44442 -3.85143 2.31282 2.66134 3.14491 3.25329 3.32658 3.51685 3.87589 3.98221 4.02276 4.15403 4.26019 4.35619 4.44301 4.62873 4.67482 4.71865 4.83120 4.87473 4.96631 4.99323 5.04780 5.07033 5.16049 5.20861 5.22085 5.27183 5.33813 5.40419 5.42071 5.49362 5.56551 5.62797 5.65333 5.69866 5.74442 5.82376 5.89435 5.93390 6.02803 6.18131 6.26250 6.30244 6.49362 7.10856 7.19668 7.53091 7.61568 7.91964 8.04076 8.58525 9.15574 9.51621 10.03003 10.73344 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.001956 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.647244 B =14310.285717 C =14595.131845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 H 0.080 0.920 4 O -0.363 6.363 5 C 0.048 3.952 6 C -0.141 4.141 7 C -0.148 4.148 8 H 0.105 0.895 9 C 0.532 3.468 10 O -0.535 6.535 11 N -0.611 5.611 12 C 0.103 3.897 13 C -0.126 4.126 14 C 0.089 3.911 15 N -0.665 5.665 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.136 4.136 29 C 0.115 3.885 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.351 0.649 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.094 0.906 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.852 -8.545 -9.765 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.098 0.902 4 O -0.282 6.282 5 C -0.029 4.029 6 C -0.179 4.179 7 C -0.170 4.170 8 H 0.124 0.876 9 C 0.320 3.680 10 O -0.411 6.411 11 N -0.344 5.344 12 C -0.020 4.020 13 C -0.165 4.165 14 C -0.021 4.021 15 N -0.298 5.298 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.174 4.174 29 C -0.008 4.008 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.171 0.829 43 H 0.061 0.939 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.094 0.906 49 H 0.112 0.888 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 21.196 -8.732 -11.099 25.470 hybrid contribution -0.328 0.158 1.719 1.757 sum 20.868 -8.573 -9.380 24.433 Atomic orbital electron populations 1.22078 0.92561 1.03882 1.03424 1.22866 0.95940 0.94743 0.83302 0.90194 1.89201 1.26994 1.74504 1.37509 1.23376 0.84751 0.99901 0.94877 1.22955 0.96031 1.02647 0.96313 1.22903 0.95863 0.97974 1.00230 0.87648 1.20144 0.81302 0.87476 0.79036 1.90698 1.69257 1.25432 1.55731 1.48143 1.40864 1.14298 1.31128 1.21994 0.98325 0.83226 0.98499 1.22085 0.92814 0.98905 1.02676 1.21468 0.90322 0.93023 0.97336 1.60083 1.03215 1.24602 1.41858 1.21716 0.97568 0.97386 0.91461 1.19822 0.89040 0.84215 0.84373 1.90531 1.52395 1.63111 1.40630 1.41874 1.13194 1.41007 1.24014 1.19757 0.88650 1.24026 1.10368 0.87865 1.25268 0.99821 0.97363 0.95561 1.69617 1.34779 1.36013 1.13928 0.85799 0.81776 0.78490 0.78282 1.19204 1.20771 1.20733 1.22095 0.96470 0.96514 1.02341 1.21579 0.88272 0.91920 0.98984 0.91180 0.90297 0.91165 0.88837 0.92144 0.89155 0.89971 0.91046 0.89524 0.90274 0.90308 0.93846 0.82855 0.93936 0.89704 0.77494 0.91926 0.90317 0.90567 0.88799 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.71 37.16 0.32 -1.27 16 2 C 0.09 0.79 3.83 -25.95 -0.10 0.69 16 3 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 4 O -0.36 -4.01 11.34 -35.23 -0.40 -4.41 16 5 C 0.05 0.37 7.63 37.93 0.29 0.66 16 6 C -0.14 -1.05 6.59 -25.16 -0.17 -1.21 16 7 C -0.15 -1.19 2.64 -90.20 -0.24 -1.43 16 8 H 0.11 0.58 6.12 -51.93 -0.32 0.26 16 9 C 0.53 5.70 4.55 -10.99 -0.05 5.65 16 10 O -0.53 -7.74 15.10 5.55 0.08 -7.65 16 11 N -0.61 -5.62 2.96 -172.50 -0.51 -6.13 16 12 C 0.10 0.75 5.43 -3.49 -0.02 0.73 16 13 C -0.13 -1.21 5.49 -26.39 -0.14 -1.35 16 14 C 0.09 0.98 2.45 -67.67 -0.17 0.81 16 15 N -0.66 -10.03 5.93 -107.95 -0.64 -10.67 16 16 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 17 C 0.44 10.15 7.82 -10.99 -0.09 10.07 16 18 O -0.58 -15.64 15.78 5.54 0.09 -15.55 16 19 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 21 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 24 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 C -0.14 -1.37 5.36 -26.61 -0.14 -1.51 16 29 C 0.12 1.08 6.44 -3.71 -0.02 1.06 16 30 H 0.07 0.86 6.78 -51.92 -0.35 0.51 16 31 H 0.08 0.70 5.21 -51.93 -0.27 0.42 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.84 7.04 -51.93 -0.37 0.47 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.48 5.42 -51.93 -0.28 0.20 16 39 H 0.08 0.85 6.41 -51.93 -0.33 0.52 16 40 H 0.08 0.76 7.42 -51.93 -0.39 0.37 16 41 H 0.04 0.46 7.80 -51.93 -0.40 0.05 16 42 H 0.35 5.59 8.03 -39.29 -0.32 5.27 16 43 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 44 H 0.08 1.29 7.41 -51.93 -0.38 0.90 16 45 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 49 H 0.09 1.00 7.00 -51.93 -0.36 0.64 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -33.88 387.70 -8.52 -42.40 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.83 Total: 12.13 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.79 Total: 5.80 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.49 Total: -54.42 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.23 Total: -27.61 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.88 -8.52 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203059444.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.889 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds