Wall clock time and date at job start Tue Mar 31 2020 23:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.64411 * 2 1 4 4 C 1.54934 * 110.88002 * 236.74494 * 2 1 3 5 5 N 1.48537 * 103.22634 * 204.15559 * 4 2 1 6 6 C 1.46902 * 111.00212 * 159.71695 * 5 4 2 7 7 C 1.50707 * 109.46861 * 59.24105 * 6 5 4 8 8 O 1.21292 * 119.99687 * 6.13888 * 7 6 5 9 9 N 1.34774 * 119.99994 * 186.13689 * 7 6 5 10 10 C 1.37093 * 120.00082 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99926 * 359.97438 * 10 9 7 12 12 C 1.38956 * 120.00163 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99560 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00006 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46963 * 180.02562 * 14 12 10 16 16 H 1.48499 * 109.47349 * 300.00237 * 14 12 10 17 17 H 1.48505 * 109.47159 * 60.00269 * 14 12 10 18 18 C 1.47902 * 105.81964 * 39.20504 * 5 4 2 19 19 C 1.53990 * 107.06070 * 334.67077 * 18 5 4 20 20 H 1.08989 * 110.31362 * 120.14084 * 19 18 5 21 21 N 1.46499 * 110.30857 * 242.21344 * 19 18 5 22 22 C 1.34780 * 119.99916 * 273.54286 * 21 19 18 23 23 O 1.21281 * 119.99909 * 359.97438 * 22 21 19 24 24 C 1.50701 * 119.99953 * 180.02562 * 22 21 19 25 25 C 1.53002 * 109.46755 * 180.02562 * 24 22 21 26 26 H 1.08996 * 110.32954 * 307.24721 * 25 24 22 27 27 C 1.54484 * 110.36799 * 185.00284 * 25 24 22 28 28 C 1.54520 * 104.05900 * 217.18993 * 27 25 24 29 29 C 1.54479 * 104.06167 * 359.97438 * 28 27 25 30 30 O 1.44426 * 110.37342 * 69.61833 * 25 24 22 31 31 H 1.09000 * 109.47517 * 296.84888 * 1 2 3 32 32 H 1.09002 * 109.47135 * 56.85029 * 1 2 3 33 33 H 1.08996 * 109.46769 * 176.84299 * 1 2 3 34 34 H 1.08998 * 110.66937 * 85.72209 * 4 2 1 35 35 H 1.09002 * 110.66813 * 322.58581 * 4 2 1 36 36 H 1.08997 * 109.47244 * 299.24510 * 6 5 4 37 37 H 1.08997 * 109.47327 * 179.23740 * 6 5 4 38 38 H 0.97005 * 119.99590 * 0.02562 * 9 7 6 39 39 H 0.97003 * 120.00392 * 359.97438 * 13 12 10 40 40 H 1.09002 * 109.91499 * 94.02437 * 18 5 4 41 41 H 1.09003 * 109.91767 * 215.31320 * 18 5 4 42 42 H 0.97001 * 120.00531 * 93.54430 * 21 19 18 43 43 H 1.09000 * 109.47214 * 299.99575 * 24 22 21 44 44 H 1.08998 * 109.47224 * 59.99975 * 24 22 21 45 45 H 1.09000 * 110.51007 * 335.82939 * 27 25 24 46 46 H 1.09000 * 110.51196 * 98.54748 * 27 25 24 47 47 H 1.08992 * 110.50866 * 118.64257 * 28 27 25 48 48 H 1.08997 * 110.50803 * 241.35764 * 28 27 25 49 49 H 1.08999 * 110.37192 * 142.81400 * 29 28 27 50 50 H 1.09005 * 110.37373 * 265.03824 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0822 -0.7938 -1.2105 5 7 3.4360 -1.2049 -0.7584 6 6 3.9295 -2.3447 -1.5427 7 6 3.9847 -1.9653 -3.0002 8 8 3.7537 -0.8237 -3.3388 9 7 4.2908 -2.8944 -3.9273 10 6 4.3415 -2.5491 -5.2530 11 1 4.1358 -1.5327 -5.5546 12 6 4.6576 -3.5069 -6.2089 13 7 4.9074 -4.7438 -5.8419 14 14 4.7260 -3.0366 -8.0154 15 1 5.0816 -4.2300 -8.8244 16 1 3.3993 -2.5257 -8.4445 17 1 5.7509 -1.9803 -8.2134 18 6 3.2921 -1.5661 0.6686 19 6 2.0770 -0.7907 1.2106 20 1 1.3219 -1.4829 1.5828 21 7 2.4927 0.1271 2.2741 22 6 2.5720 -0.3083 3.5472 23 8 2.2988 -1.4598 3.8123 24 6 2.9991 0.6360 4.6413 25 6 3.0062 -0.1046 5.9801 26 1 2.0467 -0.5939 6.1473 27 6 3.3194 0.8736 7.1340 28 6 4.1965 0.0459 8.1001 29 6 4.3088 -1.3345 7.4158 30 8 4.0787 -1.0713 6.0142 31 1 -0.3634 0.4641 0.9169 32 1 -0.3633 0.5620 -0.8604 33 1 -0.3633 -1.0261 -0.0566 34 1 2.1482 -0.1554 -2.0915 35 1 1.4624 -1.6674 -1.4128 36 1 3.2574 -3.1930 -1.4134 37 1 4.9279 -2.6166 -1.2000 38 1 4.4752 -3.8074 -3.6564 39 1 4.8715 -4.9881 -4.9039 40 1 3.1214 -2.6384 0.7648 41 1 4.1899 -1.2798 1.2165 42 1 2.7109 1.0482 2.0621 43 1 4.0005 1.0100 4.4281 44 1 2.3020 1.4724 4.6920 45 1 3.8706 1.7377 6.7631 46 1 2.4002 1.1887 7.6277 47 1 5.1812 0.5009 8.2067 48 1 3.7108 -0.0481 9.0713 49 1 5.3047 -1.7519 7.5646 50 1 3.5512 -2.0142 7.8059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206231024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:13 Heat of formation + Delta-G solvation = -115.328995 kcal Electronic energy + Delta-G solvation = -29644.728292 eV Core-core repulsion = 25478.650560 eV Total energy + Delta-G solvation = -4166.077732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.47060 -39.62982 -38.72846 -37.65801 -34.65313 -34.02172 -32.89185 -32.53829 -31.95743 -31.05934 -29.04856 -27.38773 -26.59697 -25.18935 -23.84337 -22.66906 -21.60875 -21.20411 -20.47490 -20.08106 -19.53063 -17.87682 -17.42100 -16.92285 -16.52931 -16.31059 -15.98493 -15.81204 -15.33663 -14.77872 -14.76594 -14.46268 -14.30079 -14.06066 -13.73965 -13.67451 -13.32264 -13.13400 -12.82491 -12.70180 -12.54442 -12.31107 -12.19778 -12.10988 -11.78107 -11.65614 -11.52187 -11.41550 -11.24450 -11.20018 -11.04798 -10.92474 -10.76887 -10.61565 -10.19774 -10.02443 -9.89317 -9.84118 -9.50358 -9.17379 -8.45161 -8.06753 -7.97306 -6.73771 -3.86861 2.53469 2.99605 3.31907 3.35562 3.55267 3.56036 3.85880 4.03327 4.15474 4.28433 4.32691 4.46514 4.52509 4.63367 4.64383 4.68268 4.85237 4.86690 5.01988 5.09390 5.10247 5.21432 5.25079 5.28793 5.31412 5.39514 5.41789 5.43067 5.46627 5.59968 5.61511 5.68626 5.70638 5.78335 5.80628 5.86574 5.93465 6.01826 6.05733 6.19075 6.45130 6.49885 6.56324 7.12421 7.18290 7.39041 7.82051 8.09508 8.12745 8.61839 8.81830 9.49252 9.89856 10.69586 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.001916 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.199097 B =14609.755102 C =15367.268811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.044 3.956 5 N -0.492 5.492 6 C 0.036 3.964 7 C 0.446 3.554 8 O -0.573 6.573 9 N -0.576 5.576 10 C -0.381 4.381 11 H 0.099 0.901 12 C -0.010 4.010 13 N -0.901 5.901 14 Si 1.092 2.908 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.025 3.975 19 C 0.141 3.859 20 H 0.093 0.907 21 N -0.721 5.721 22 C 0.513 3.487 23 O -0.530 6.530 24 C -0.138 4.138 25 C 0.091 3.909 26 H 0.077 0.923 27 C -0.153 4.153 28 C -0.156 4.156 29 C 0.043 3.957 30 O -0.358 6.358 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.375 0.625 39 H 0.261 0.739 40 H 0.049 0.951 41 H 0.081 0.919 42 H 0.401 0.599 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.956 10.921 26.338 29.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.083 4.083 5 N -0.216 5.216 6 C -0.096 4.096 7 C 0.232 3.768 8 O -0.456 6.456 9 N -0.214 5.214 10 C -0.511 4.511 11 H 0.117 0.883 12 C -0.213 4.213 13 N -0.540 5.540 14 Si 0.918 3.082 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.105 4.105 19 C 0.036 3.964 20 H 0.111 0.889 21 N -0.373 5.373 22 C 0.299 3.701 23 O -0.406 6.406 24 C -0.178 4.178 25 C 0.033 3.967 26 H 0.095 0.905 27 C -0.191 4.191 28 C -0.193 4.193 29 C -0.034 4.034 30 O -0.277 6.277 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.208 0.792 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.236 0.764 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.108 0.892 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.520 10.566 24.484 27.232 hybrid contribution -0.566 -0.203 2.001 2.089 sum -6.086 10.363 26.484 29.084 Atomic orbital electron populations 1.21758 0.94112 1.02188 1.01862 1.22394 0.95741 1.00131 0.93822 0.89386 1.23399 0.87837 0.98930 0.98155 1.64563 1.23905 1.32589 1.00525 1.22092 1.01279 0.92122 0.94075 1.19616 0.84553 0.86415 0.86204 1.90480 1.54022 1.19739 1.81406 1.41942 1.62164 1.10199 1.07061 1.20521 1.48783 0.99746 0.82025 0.88318 1.26516 0.95242 0.92860 1.06644 1.70896 1.46269 1.18016 1.18820 0.83127 0.76981 0.75570 0.72549 1.20430 1.21049 1.21008 1.23352 0.98540 0.98368 0.90204 1.21892 0.95948 0.91716 0.86836 0.88870 1.46111 1.69679 1.14622 1.06872 1.20538 0.77218 0.88907 0.83452 1.90731 1.48340 1.18769 1.82757 1.21784 1.04502 0.98468 0.92999 1.22693 0.92341 0.88700 0.93017 0.90550 1.23028 1.00620 0.99107 0.96305 1.22942 1.00862 0.96280 0.99263 1.23390 1.01843 0.96154 0.82036 1.89254 1.53508 1.61599 1.23349 0.92614 0.91882 0.92509 0.87205 0.94142 0.93469 0.89217 0.79163 0.92748 0.93318 0.90068 0.76441 0.87877 0.87585 0.90383 0.90352 0.90626 0.90587 0.89160 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.17 37.16 0.34 -1.11 16 2 C -0.10 -1.22 3.36 -88.76 -0.30 -1.52 16 3 H 0.09 1.00 7.75 -51.92 -0.40 0.60 16 4 C 0.04 0.72 5.04 -1.90 -0.01 0.71 16 5 N -0.49 -8.47 5.11 -231.89 -1.18 -9.66 16 6 C 0.04 0.68 5.31 -4.97 -0.03 0.65 16 7 C 0.45 10.69 7.42 -10.98 -0.08 10.61 16 8 O -0.57 -15.44 13.87 5.55 0.08 -15.37 16 9 N -0.58 -14.71 5.28 -10.96 -0.06 -14.76 16 10 C -0.38 -10.79 9.68 -14.93 -0.14 -10.94 16 11 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 12 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16 13 N -0.90 -25.53 13.68 55.50 0.76 -24.78 16 14 Si 1.09 24.44 29.92 -169.99 -5.09 19.35 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 C 0.02 0.36 6.49 -2.76 -0.02 0.34 16 19 C 0.14 1.75 2.87 -66.57 -0.19 1.55 16 20 H 0.09 1.25 7.35 -51.94 -0.38 0.86 16 21 N -0.72 -7.29 5.03 -52.49 -0.26 -7.55 16 22 C 0.51 5.78 7.75 -10.98 -0.09 5.70 16 23 O -0.53 -8.25 15.31 -0.95 -0.01 -8.26 16 24 C -0.14 -1.03 5.33 -27.88 -0.15 -1.18 16 25 C 0.09 0.79 2.74 -25.95 -0.07 0.71 16 26 H 0.08 0.73 7.90 -51.93 -0.41 0.32 16 27 C -0.15 -0.87 6.63 -25.15 -0.17 -1.03 16 28 C -0.16 -0.88 7.09 -25.16 -0.18 -1.06 16 29 C 0.04 0.34 7.63 37.93 0.29 0.63 16 30 O -0.36 -4.13 10.92 -41.74 -0.46 -4.59 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 34 H 0.11 2.12 6.43 -51.93 -0.33 1.79 16 35 H 0.04 0.67 7.89 -51.93 -0.41 0.26 16 36 H 0.05 0.82 7.98 -51.93 -0.41 0.40 16 37 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 38 H 0.38 8.94 6.73 -40.82 -0.27 8.66 16 39 H 0.26 7.15 6.78 -40.82 -0.28 6.87 16 40 H 0.05 0.73 7.68 -51.93 -0.40 0.33 16 41 H 0.08 1.21 7.92 -51.93 -0.41 0.80 16 42 H 0.40 3.05 8.35 -40.82 -0.34 2.71 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.37 7.87 -51.93 -0.41 -0.03 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 399.77 15.07 6.02 6.02 Total: -1.00 -35.72 399.77 -9.37 -45.10 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -8.28 Total: 10.80 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.88 Total: 3.70 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.75 Total: -56.75 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.39 Total: -28.22 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.09 Total: 19.35 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.72 -9.37 -45.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206231024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.233 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds