Wall clock time and date at job start Tue Mar 31 2020 23:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.64411 * 2 1 4 4 C 1.54934 * 110.88002 * 236.74494 * 2 1 3 5 5 N 1.48537 * 103.22634 * 204.15559 * 4 2 1 6 6 C 1.46902 * 111.00212 * 159.71695 * 5 4 2 7 7 C 1.50707 * 109.46861 * 59.24105 * 6 5 4 8 8 O 1.21292 * 119.99687 * 6.13888 * 7 6 5 9 9 N 1.34774 * 119.99994 * 186.13689 * 7 6 5 10 10 C 1.37093 * 120.00082 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99926 * 359.97438 * 10 9 7 12 12 C 1.38956 * 120.00163 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99560 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00006 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46963 * 180.02562 * 14 12 10 16 16 H 1.48499 * 109.47349 * 300.00237 * 14 12 10 17 17 H 1.48505 * 109.47159 * 60.00269 * 14 12 10 18 18 C 1.47902 * 105.81964 * 39.20504 * 5 4 2 19 19 C 1.53990 * 107.06070 * 334.67077 * 18 5 4 20 20 H 1.08989 * 110.31362 * 120.14084 * 19 18 5 21 21 N 1.46499 * 110.30857 * 242.21344 * 19 18 5 22 22 C 1.34780 * 119.99916 * 273.54286 * 21 19 18 23 23 O 1.21281 * 119.99909 * 359.97438 * 22 21 19 24 24 C 1.50701 * 119.99953 * 180.02562 * 22 21 19 25 25 C 1.53002 * 109.46755 * 180.02562 * 24 22 21 26 26 H 1.08996 * 110.32954 * 307.24721 * 25 24 22 27 27 C 1.54484 * 110.36799 * 185.00284 * 25 24 22 28 28 C 1.54520 * 104.05900 * 217.18993 * 27 25 24 29 29 C 1.54479 * 104.06167 * 359.97438 * 28 27 25 30 30 O 1.44426 * 110.37342 * 69.61833 * 25 24 22 31 31 H 1.09000 * 109.47517 * 296.84888 * 1 2 3 32 32 H 1.09002 * 109.47135 * 56.85029 * 1 2 3 33 33 H 1.08996 * 109.46769 * 176.84299 * 1 2 3 34 34 H 1.08998 * 110.66937 * 85.72209 * 4 2 1 35 35 H 1.09002 * 110.66813 * 322.58581 * 4 2 1 36 36 H 1.08997 * 109.47244 * 299.24510 * 6 5 4 37 37 H 1.08997 * 109.47327 * 179.23740 * 6 5 4 38 38 H 0.97005 * 119.99590 * 0.02562 * 9 7 6 39 39 H 0.97003 * 120.00392 * 359.97438 * 13 12 10 40 40 H 1.09002 * 109.91499 * 94.02437 * 18 5 4 41 41 H 1.09003 * 109.91767 * 215.31320 * 18 5 4 42 42 H 0.97001 * 120.00531 * 93.54430 * 21 19 18 43 43 H 1.09000 * 109.47214 * 299.99575 * 24 22 21 44 44 H 1.08998 * 109.47224 * 59.99975 * 24 22 21 45 45 H 1.09000 * 110.51007 * 335.82939 * 27 25 24 46 46 H 1.09000 * 110.51196 * 98.54748 * 27 25 24 47 47 H 1.08992 * 110.50866 * 118.64257 * 28 27 25 48 48 H 1.08997 * 110.50803 * 241.35764 * 28 27 25 49 49 H 1.08999 * 110.37192 * 142.81400 * 29 28 27 50 50 H 1.09005 * 110.37373 * 265.03824 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0822 -0.7938 -1.2105 5 7 3.4360 -1.2049 -0.7584 6 6 3.9295 -2.3447 -1.5427 7 6 3.9847 -1.9653 -3.0002 8 8 3.7537 -0.8237 -3.3388 9 7 4.2908 -2.8944 -3.9273 10 6 4.3415 -2.5491 -5.2530 11 1 4.1358 -1.5327 -5.5546 12 6 4.6576 -3.5069 -6.2089 13 7 4.9074 -4.7438 -5.8419 14 14 4.7260 -3.0366 -8.0154 15 1 5.0816 -4.2300 -8.8244 16 1 3.3993 -2.5257 -8.4445 17 1 5.7509 -1.9803 -8.2134 18 6 3.2921 -1.5661 0.6686 19 6 2.0770 -0.7907 1.2106 20 1 1.3219 -1.4829 1.5828 21 7 2.4927 0.1271 2.2741 22 6 2.5720 -0.3083 3.5472 23 8 2.2988 -1.4598 3.8123 24 6 2.9991 0.6360 4.6413 25 6 3.0062 -0.1046 5.9801 26 1 2.0467 -0.5939 6.1473 27 6 3.3194 0.8736 7.1340 28 6 4.1965 0.0459 8.1001 29 6 4.3088 -1.3345 7.4158 30 8 4.0787 -1.0713 6.0142 31 1 -0.3634 0.4641 0.9169 32 1 -0.3633 0.5620 -0.8604 33 1 -0.3633 -1.0261 -0.0566 34 1 2.1482 -0.1554 -2.0915 35 1 1.4624 -1.6674 -1.4128 36 1 3.2574 -3.1930 -1.4134 37 1 4.9279 -2.6166 -1.2000 38 1 4.4752 -3.8074 -3.6564 39 1 4.8715 -4.9881 -4.9039 40 1 3.1214 -2.6384 0.7648 41 1 4.1899 -1.2798 1.2165 42 1 2.7109 1.0482 2.0621 43 1 4.0005 1.0100 4.4281 44 1 2.3020 1.4724 4.6920 45 1 3.8706 1.7377 6.7631 46 1 2.4002 1.1887 7.6277 47 1 5.1812 0.5009 8.2067 48 1 3.7108 -0.0481 9.0713 49 1 5.3047 -1.7519 7.5646 50 1 3.5512 -2.0142 7.8059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206231024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:12 Heat of formation + Delta-G solvation = -143.035031 kcal Electronic energy + Delta-G solvation = -29645.929716 eV Core-core repulsion = 25478.650560 eV Total energy + Delta-G solvation = -4167.279155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44622 -40.69805 -39.98137 -39.07495 -36.44624 -35.45004 -33.89400 -33.27280 -33.09176 -32.54182 -30.25599 -28.62820 -27.41887 -26.74007 -25.39999 -23.42611 -22.60504 -21.86557 -21.59652 -21.36374 -20.96240 -19.96584 -18.30907 -18.18997 -17.68304 -17.20177 -16.96051 -16.65890 -16.56828 -16.32722 -16.11656 -15.66021 -15.56735 -15.40184 -14.98290 -14.73828 -14.48398 -14.25234 -14.07299 -13.76465 -13.48980 -13.36275 -13.25249 -13.04007 -12.99039 -12.90731 -12.61029 -12.59816 -12.33730 -12.18595 -12.05782 -11.92290 -11.91434 -11.88503 -11.72318 -11.47309 -11.46836 -10.81823 -10.69819 -10.40350 -10.12361 -10.08915 -9.47521 -8.93890 -6.07828 1.51452 1.53983 1.68029 1.82364 1.97303 2.15576 2.38150 2.68182 2.99631 3.14625 3.16891 3.42419 3.59143 3.65620 3.73317 3.94430 3.97120 4.06488 4.06931 4.12343 4.17302 4.23237 4.27336 4.30624 4.39146 4.47611 4.52580 4.58773 4.62289 4.71070 4.75032 4.81578 4.85835 4.88886 4.93877 4.98443 5.00872 5.14921 5.16758 5.22865 5.25897 5.52683 5.56197 5.78243 5.85898 5.94492 5.97563 6.55170 6.58940 6.72713 7.30310 7.41850 7.89300 8.53359 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.001916 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.199097 B =14609.755102 C =15367.268811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 H 0.100 0.900 4 C 0.042 3.958 5 N -0.505 5.505 6 C 0.046 3.954 7 C 0.447 3.553 8 O -0.604 6.604 9 N -0.587 5.587 10 C -0.408 4.408 11 H 0.076 0.924 12 C -0.044 4.044 13 N -0.917 5.917 14 Si 1.135 2.865 15 H -0.274 1.274 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.028 3.972 19 C 0.151 3.849 20 H 0.086 0.914 21 N -0.709 5.709 22 C 0.509 3.491 23 O -0.578 6.578 24 C -0.130 4.130 25 C 0.081 3.919 26 H 0.058 0.942 27 C -0.145 4.145 28 C -0.151 4.151 29 C 0.032 3.968 30 O -0.397 6.397 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.383 0.617 39 H 0.258 0.742 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.416 0.584 43 H 0.116 0.884 44 H 0.144 0.856 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 12.711 27.885 31.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.118 0.882 4 C -0.085 4.085 5 N -0.229 5.229 6 C -0.086 4.086 7 C 0.235 3.765 8 O -0.489 6.489 9 N -0.226 5.226 10 C -0.537 4.537 11 H 0.094 0.906 12 C -0.242 4.242 13 N -0.557 5.557 14 Si 0.955 3.045 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.101 4.101 19 C 0.044 3.956 20 H 0.104 0.896 21 N -0.362 5.362 22 C 0.297 3.703 23 O -0.457 6.457 24 C -0.169 4.169 25 C 0.023 3.977 26 H 0.076 0.924 27 C -0.182 4.182 28 C -0.189 4.189 29 C -0.044 4.044 30 O -0.317 6.317 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.217 0.783 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.254 0.746 43 H 0.134 0.866 44 H 0.162 0.838 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.111 0.889 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.878 12.387 26.068 29.454 hybrid contribution -0.453 -0.766 1.592 1.824 sum -6.331 11.621 27.660 30.663 Atomic orbital electron populations 1.21738 0.92411 1.02254 1.03082 1.22293 0.96980 0.99845 0.91356 0.88151 1.23310 0.87681 0.98676 0.98872 1.64531 1.24617 1.32065 1.01684 1.21984 1.02841 0.93221 0.90524 1.20530 0.82342 0.85614 0.88054 1.90463 1.54783 1.21148 1.82544 1.42002 1.63000 1.10913 1.06705 1.20530 1.50324 0.99132 0.83710 0.90580 1.27885 0.93937 0.92213 1.10172 1.70971 1.47245 1.18589 1.18849 0.82618 0.77910 0.75815 0.68205 1.19835 1.19666 1.19744 1.23351 0.99585 0.98655 0.88472 1.21648 0.94653 0.91879 0.87388 0.89609 1.45992 1.69060 1.14982 1.06153 1.21260 0.76028 0.88824 0.84159 1.90716 1.50516 1.21047 1.83467 1.21875 1.06036 0.98276 0.90741 1.22847 0.90988 0.89001 0.94817 0.92358 1.23019 1.01560 0.98601 0.95062 1.22942 1.01555 0.94674 0.99706 1.23564 1.01948 0.97788 0.81118 1.89211 1.54386 1.62764 1.25313 0.90553 0.91550 0.92987 0.90549 0.94791 0.91763 0.87626 0.78330 0.93119 0.93660 0.90234 0.74631 0.86568 0.83779 0.88927 0.88664 0.89927 0.89103 0.88857 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.17 71.98 0.66 -1.90 16 2 C -0.09 -1.94 3.36 -9.59 -0.03 -1.97 16 3 H 0.10 2.06 7.75 -2.38 -0.02 2.04 16 4 C 0.04 1.39 5.04 86.65 0.44 1.82 16 5 N -0.50 -17.24 5.11 -887.55 -4.54 -21.77 16 6 C 0.05 1.71 5.31 85.56 0.45 2.17 16 7 C 0.45 21.81 7.42 87.66 0.65 22.46 16 8 O -0.60 -33.45 13.87 -3.07 -0.04 -33.49 16 9 N -0.59 -30.62 5.28 -306.98 -1.62 -32.24 16 10 C -0.41 -23.57 9.68 84.04 0.81 -22.76 16 11 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 12 C -0.04 -2.43 5.50 84.93 0.47 -1.96 16 13 N -0.92 -52.15 13.68 21.67 0.30 -51.86 16 14 Si 1.14 48.95 29.92 68.60 2.05 51.00 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 16 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 18 C 0.03 0.81 6.49 86.44 0.56 1.37 16 19 C 0.15 3.53 2.87 45.87 0.13 3.66 16 20 H 0.09 2.21 7.35 -2.39 -0.02 2.19 16 21 N -0.71 -12.88 5.03 -438.38 -2.20 -15.08 16 22 C 0.51 10.71 7.75 87.66 0.68 11.39 16 23 O -0.58 -17.91 15.31 3.19 0.05 -17.86 16 24 C -0.13 -1.61 5.33 29.85 0.16 -1.45 16 25 C 0.08 1.29 2.74 31.10 0.09 1.38 16 26 H 0.06 1.10 7.90 -2.39 -0.02 1.08 16 27 C -0.14 -1.23 6.63 31.62 0.21 -1.03 16 28 C -0.15 -1.40 7.09 31.61 0.22 -1.17 16 29 C 0.03 0.50 7.63 72.48 0.55 1.05 16 30 O -0.40 -9.05 10.92 -142.76 -1.56 -10.60 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.03 8.11 -2.39 -0.02 1.01 16 34 H 0.08 3.03 6.43 -2.39 -0.02 3.02 16 35 H 0.03 1.13 7.89 -2.39 -0.02 1.11 16 36 H 0.06 2.19 7.98 -2.39 -0.02 2.17 16 37 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 38 H 0.38 18.57 6.73 -92.70 -0.62 17.95 16 39 H 0.26 14.28 6.78 -92.71 -0.63 13.65 16 40 H 0.05 1.33 7.68 -2.39 -0.02 1.31 16 41 H 0.08 2.30 7.92 -2.39 -0.02 2.28 16 42 H 0.42 5.09 8.35 -92.71 -0.77 4.31 16 43 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 0.54 7.87 -2.39 -0.02 0.52 16 46 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -79.83 399.77 -1.82 -81.65 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: -0.30 Total: 37.20 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 6.05 Total: 13.05 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -8.06 Total: -120.95 kcal Atomic # 8 Polarization: -60.40 SS G_CDS: -1.55 Total: -61.96 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.05 Total: 51.00 kcal Total: -79.83 -1.82 -81.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206231024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.383 kcal (2) G-P(sol) polarization free energy of solvation -79.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds