Wall clock time and date at job start Tue Mar 31 2020 23:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.64112 * 2 1 4 4 C 1.54936 * 110.72056 * 236.65736 * 2 1 3 5 5 N 1.48539 * 103.22470 * 204.22365 * 4 2 1 6 6 C 1.46892 * 111.00053 * 159.71924 * 5 4 2 7 7 C 1.50699 * 109.47465 * 190.00171 * 6 5 4 8 8 O 1.21294 * 119.99644 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00086 * 180.02562 * 7 6 5 10 10 C 1.37101 * 119.99907 * 180.02562 * 9 7 6 11 11 H 1.08008 * 119.99864 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00192 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00055 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00121 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46840 * 90.00107 * 14 12 10 16 16 H 1.48499 * 109.47210 * 209.99882 * 14 12 10 17 17 H 1.48495 * 109.46902 * 330.00348 * 14 12 10 18 18 C 1.47905 * 105.81630 * 39.21221 * 5 4 2 19 19 C 1.53995 * 107.05988 * 334.66609 * 18 5 4 20 20 H 1.08996 * 110.39456 * 120.18933 * 19 18 5 21 21 N 1.46498 * 110.30938 * 242.31631 * 19 18 5 22 22 C 1.34780 * 119.99902 * 270.71250 * 21 19 18 23 23 O 1.21287 * 119.99522 * 0.02562 * 22 21 19 24 24 C 1.50698 * 120.00503 * 179.97438 * 22 21 19 25 25 H 1.09004 * 109.57143 * 60.15580 * 24 22 21 26 26 C 1.53177 * 109.53626 * 180.30940 * 24 22 21 27 27 C 1.53173 * 109.04588 * 176.87704 * 26 24 22 28 28 C 1.53095 * 109.16329 * 303.02563 * 27 26 24 29 29 O 1.42901 * 109.41489 * 57.60980 * 28 27 26 30 30 C 1.42905 * 114.09770 * 298.84274 * 29 28 27 31 31 H 1.08997 * 109.47331 * 296.84516 * 1 2 3 32 32 H 1.08995 * 109.47221 * 56.84563 * 1 2 3 33 33 H 1.08995 * 109.47058 * 176.84526 * 1 2 3 34 34 H 1.08994 * 110.66800 * 322.65834 * 4 2 1 35 35 H 1.08998 * 110.66782 * 85.63194 * 4 2 1 36 36 H 1.09003 * 109.47527 * 310.00793 * 6 5 4 37 37 H 1.09001 * 109.47436 * 70.00156 * 6 5 4 38 38 H 0.96996 * 120.00302 * 359.97438 * 9 7 6 39 39 H 0.96998 * 120.00114 * 180.02562 * 13 12 10 40 40 H 1.09003 * 109.91341 * 215.31850 * 18 5 4 41 41 H 1.08998 * 109.92356 * 94.01983 * 18 5 4 42 42 H 0.96996 * 120.00857 * 90.71629 * 21 19 18 43 43 H 1.08995 * 109.53065 * 57.00471 * 26 24 22 44 44 H 1.09003 * 109.61545 * 296.79713 * 26 24 22 45 45 H 1.09001 * 109.52011 * 183.12252 * 27 26 24 46 46 H 1.09003 * 109.52380 * 62.93128 * 27 26 24 47 47 H 1.09002 * 109.47669 * 297.62672 * 28 27 26 48 48 H 1.08998 * 109.47829 * 177.59734 * 28 27 26 49 49 H 1.09002 * 109.48053 * 181.14179 * 30 29 28 50 50 H 1.08999 * 109.48097 * 301.16746 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0783 -0.7965 -1.2106 5 7 3.4319 -1.2104 -0.7603 6 6 3.9212 -2.3522 -1.5442 7 6 5.1738 -2.8981 -0.9086 8 8 5.6152 -2.3865 0.0987 9 7 5.8036 -3.9547 -1.4594 10 6 6.9429 -4.4516 -0.8808 11 1 7.3360 -3.9961 0.0162 12 6 7.5925 -5.5406 -1.4489 13 7 7.1152 -6.0939 -2.5411 14 14 9.1453 -6.2172 -0.6610 15 1 8.7828 -7.2648 0.3272 16 1 10.0164 -6.8061 -1.7096 17 1 9.8709 -5.1186 0.0259 18 6 3.2894 -1.5698 0.6674 19 6 2.0771 -0.7908 1.2105 20 1 1.3202 -1.4795 1.5859 21 7 2.4971 0.1288 2.2707 22 6 2.5240 -0.2875 3.5523 23 8 2.2009 -1.4236 3.8277 24 6 2.9567 0.6582 4.6430 25 1 2.2906 1.5208 4.6637 26 6 2.9050 -0.0607 5.9946 27 6 3.4206 0.8849 7.0837 28 6 4.8363 1.3427 6.7228 29 8 4.8187 1.9757 5.4417 30 6 4.3901 1.1250 4.3765 31 1 -0.3634 0.4641 0.9169 32 1 -0.3633 0.5620 -0.8603 33 1 -0.3633 -1.0261 -0.0566 34 1 1.4560 -1.6687 -1.4108 35 1 2.1417 -0.1599 -2.0931 36 1 3.1578 -3.1299 -1.5690 37 1 4.1418 -2.0272 -2.5609 38 1 5.4505 -4.3641 -2.2647 39 1 7.5685 -6.8544 -2.9375 40 1 4.1887 -1.2850 1.2135 41 1 3.1161 -2.6415 0.7651 42 1 2.7559 1.0373 2.0505 43 1 3.5324 -0.9512 5.9578 44 1 1.8774 -0.3477 6.2174 45 1 3.4395 0.3628 8.0403 46 1 2.7641 1.7522 7.1538 47 1 5.5009 0.4793 6.6926 48 1 5.1920 2.0493 7.4726 49 1 4.4244 1.6749 3.4359 50 1 5.0490 0.2589 4.3154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206532229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:42 Heat of formation + Delta-G solvation = -120.476601 kcal Electronic energy + Delta-G solvation = -30521.770356 eV Core-core repulsion = 26355.469408 eV Total energy + Delta-G solvation = -4166.300949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60687 -39.49753 -38.48220 -37.55990 -34.53561 -33.86729 -33.78992 -32.67451 -31.54420 -31.24629 -28.79408 -27.33185 -25.48374 -25.14312 -24.62829 -23.67926 -21.64717 -20.85630 -20.58403 -19.77654 -19.07337 -17.81406 -17.43100 -16.77229 -16.49714 -16.10512 -15.89879 -15.34152 -15.15485 -15.03856 -14.58736 -14.43973 -14.20456 -13.93868 -13.86656 -13.65960 -13.25703 -13.21300 -13.07053 -12.79686 -12.60354 -12.16585 -12.03594 -11.87861 -11.81586 -11.54183 -11.37656 -11.35855 -11.28406 -11.17552 -11.06385 -10.81521 -10.74806 -10.64859 -10.38098 -10.21675 -9.94780 -9.63795 -9.50089 -9.03731 -8.40442 -8.00453 -7.92596 -6.41681 -3.82419 2.56486 3.07310 3.18141 3.26748 3.32704 3.61243 3.89819 4.06184 4.25160 4.35875 4.40535 4.56296 4.56926 4.66417 4.71080 4.87598 4.93204 5.00750 5.05228 5.13263 5.25010 5.31108 5.35054 5.38462 5.45471 5.48786 5.52112 5.54797 5.60002 5.68261 5.69385 5.76713 5.79792 5.85075 5.90115 5.94432 6.04481 6.08429 6.12457 6.27610 6.42289 6.72189 6.88324 7.17542 7.24273 7.46273 7.55404 8.05818 8.18724 8.61292 9.17933 9.53783 10.05280 10.76089 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009403 B = 0.003074 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.203329 B = 9106.475674 C =11425.974433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.036 3.964 5 N -0.495 5.495 6 C 0.035 3.965 7 C 0.441 3.559 8 O -0.581 6.581 9 N -0.562 5.562 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.043 3.957 19 C 0.132 3.868 20 H 0.093 0.907 21 N -0.715 5.715 22 C 0.520 3.480 23 O -0.534 6.534 24 C -0.142 4.142 25 H 0.104 0.896 26 C -0.104 4.104 27 C -0.155 4.155 28 C 0.055 3.945 29 O -0.377 6.377 30 C 0.070 3.930 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.400 0.600 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 15.471 9.858 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.092 4.092 5 N -0.219 5.219 6 C -0.096 4.096 7 C 0.227 3.773 8 O -0.465 6.465 9 N -0.199 5.199 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.086 4.086 19 C 0.027 3.973 20 H 0.111 0.889 21 N -0.367 5.367 22 C 0.305 3.695 23 O -0.410 6.410 24 C -0.163 4.163 25 H 0.122 0.878 26 C -0.142 4.142 27 C -0.193 4.193 28 C -0.021 4.021 29 O -0.296 6.296 30 C -0.007 4.007 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.064 0.936 42 H 0.235 0.765 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.113 0.887 49 H 0.118 0.882 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.522 15.409 10.519 22.470 hybrid contribution 0.004 -1.327 -0.327 1.367 sum -12.518 14.082 10.192 21.422 Atomic orbital electron populations 1.21776 0.94145 1.02180 1.01881 1.22330 0.95614 0.99975 0.94001 0.89361 1.23352 0.89745 0.98564 0.97539 1.64629 1.21236 1.33415 1.02621 1.22116 0.96753 0.92224 0.98545 1.19725 0.86956 0.83462 0.87201 1.90495 1.68146 1.61196 1.26653 1.41846 1.24378 1.27329 1.26318 1.19695 1.01256 1.11761 1.10072 0.87940 1.25259 0.99691 0.96805 0.96152 1.69612 1.40956 1.23826 1.19931 0.85864 0.80895 0.79103 0.78479 1.20412 1.20897 1.19389 1.23298 0.98223 0.97821 0.89261 1.22094 0.96885 0.91629 0.86702 0.88929 1.46065 1.68432 1.15919 1.06276 1.20409 0.77396 0.88313 0.83364 1.90722 1.47855 1.19696 1.82756 1.22004 0.99890 0.99223 0.95206 0.87822 1.21413 1.03000 0.98079 0.91664 1.22222 0.97725 1.00093 0.99244 1.22653 0.95969 0.98209 0.85309 1.87952 1.87129 1.38447 1.16022 1.22541 0.91956 0.95442 0.90775 0.92473 0.92143 0.92423 0.93550 0.89761 0.93278 0.89060 0.77472 0.91866 0.87584 0.93620 0.76517 0.90675 0.90748 0.90445 0.91025 0.92784 0.88728 0.88175 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.16 37.16 0.34 -0.85 16 2 C -0.10 -1.03 3.37 -88.76 -0.30 -1.33 16 3 H 0.09 0.83 7.75 -51.93 -0.40 0.42 16 4 C 0.04 0.44 6.00 -1.89 -0.01 0.43 16 5 N -0.49 -8.14 5.26 -231.89 -1.22 -9.36 16 6 C 0.04 0.64 5.48 -4.98 -0.03 0.61 16 7 C 0.44 10.50 7.36 -10.99 -0.08 10.42 16 8 O -0.58 -15.57 13.37 5.55 0.07 -15.50 16 9 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 10 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 11 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 14 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 C 0.04 0.74 4.86 -2.75 -0.01 0.73 16 19 C 0.13 1.74 2.92 -66.57 -0.19 1.55 16 20 H 0.09 1.33 7.26 -51.93 -0.38 0.95 16 21 N -0.72 -8.24 4.91 -52.49 -0.26 -8.50 16 22 C 0.52 6.79 7.16 -10.98 -0.08 6.71 16 23 O -0.53 -9.21 15.62 5.55 0.09 -9.12 16 24 C -0.14 -1.43 2.73 -91.63 -0.25 -1.68 16 25 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 26 C -0.10 -1.05 4.62 -26.55 -0.12 -1.17 16 27 C -0.16 -1.23 6.14 -26.59 -0.16 -1.39 16 28 C 0.06 0.48 6.84 37.21 0.25 0.73 16 29 O -0.38 -4.09 10.77 -35.23 -0.38 -4.46 16 30 C 0.07 0.73 6.00 37.20 0.22 0.96 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 34 H 0.05 0.54 7.73 -51.93 -0.40 0.14 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.82 7.89 -51.93 -0.41 0.41 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.11 2.20 6.53 -51.93 -0.34 1.86 16 41 H 0.05 0.90 7.59 -51.93 -0.39 0.51 16 42 H 0.40 3.55 7.85 -40.82 -0.32 3.23 16 43 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.10 0.91 7.64 -51.93 -0.40 0.51 16 50 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -33.61 396.26 -9.11 -42.72 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -8.36 Total: 12.80 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.66 Total: 7.67 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.81 Total: -56.36 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.22 Total: -29.08 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.61 -9.11 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206532229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.758 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds