Wall clock time and date at job start Tue Mar 31 2020 23:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.64112 * 2 1 4 4 C 1.54936 * 110.72056 * 236.65736 * 2 1 3 5 5 N 1.48539 * 103.22470 * 204.22365 * 4 2 1 6 6 C 1.46892 * 111.00053 * 159.71924 * 5 4 2 7 7 C 1.50699 * 109.47465 * 190.00171 * 6 5 4 8 8 O 1.21294 * 119.99644 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00086 * 180.02562 * 7 6 5 10 10 C 1.37101 * 119.99907 * 180.02562 * 9 7 6 11 11 H 1.08008 * 119.99864 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00192 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00055 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00121 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46840 * 90.00107 * 14 12 10 16 16 H 1.48499 * 109.47210 * 209.99882 * 14 12 10 17 17 H 1.48495 * 109.46902 * 330.00348 * 14 12 10 18 18 C 1.47905 * 105.81630 * 39.21221 * 5 4 2 19 19 C 1.53995 * 107.05988 * 334.66609 * 18 5 4 20 20 H 1.08996 * 110.39456 * 120.18933 * 19 18 5 21 21 N 1.46498 * 110.30938 * 242.31631 * 19 18 5 22 22 C 1.34780 * 119.99902 * 270.71250 * 21 19 18 23 23 O 1.21287 * 119.99522 * 0.02562 * 22 21 19 24 24 C 1.50698 * 120.00503 * 179.97438 * 22 21 19 25 25 H 1.09004 * 109.57143 * 60.15580 * 24 22 21 26 26 C 1.53177 * 109.53626 * 180.30940 * 24 22 21 27 27 C 1.53173 * 109.04588 * 176.87704 * 26 24 22 28 28 C 1.53095 * 109.16329 * 303.02563 * 27 26 24 29 29 O 1.42901 * 109.41489 * 57.60980 * 28 27 26 30 30 C 1.42905 * 114.09770 * 298.84274 * 29 28 27 31 31 H 1.08997 * 109.47331 * 296.84516 * 1 2 3 32 32 H 1.08995 * 109.47221 * 56.84563 * 1 2 3 33 33 H 1.08995 * 109.47058 * 176.84526 * 1 2 3 34 34 H 1.08994 * 110.66800 * 322.65834 * 4 2 1 35 35 H 1.08998 * 110.66782 * 85.63194 * 4 2 1 36 36 H 1.09003 * 109.47527 * 310.00793 * 6 5 4 37 37 H 1.09001 * 109.47436 * 70.00156 * 6 5 4 38 38 H 0.96996 * 120.00302 * 359.97438 * 9 7 6 39 39 H 0.96998 * 120.00114 * 180.02562 * 13 12 10 40 40 H 1.09003 * 109.91341 * 215.31850 * 18 5 4 41 41 H 1.08998 * 109.92356 * 94.01983 * 18 5 4 42 42 H 0.96996 * 120.00857 * 90.71629 * 21 19 18 43 43 H 1.08995 * 109.53065 * 57.00471 * 26 24 22 44 44 H 1.09003 * 109.61545 * 296.79713 * 26 24 22 45 45 H 1.09001 * 109.52011 * 183.12252 * 27 26 24 46 46 H 1.09003 * 109.52380 * 62.93128 * 27 26 24 47 47 H 1.09002 * 109.47669 * 297.62672 * 28 27 26 48 48 H 1.08998 * 109.47829 * 177.59734 * 28 27 26 49 49 H 1.09002 * 109.48053 * 181.14179 * 30 29 28 50 50 H 1.08999 * 109.48097 * 301.16746 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0783 -0.7965 -1.2106 5 7 3.4319 -1.2104 -0.7603 6 6 3.9212 -2.3522 -1.5442 7 6 5.1738 -2.8981 -0.9086 8 8 5.6152 -2.3865 0.0987 9 7 5.8036 -3.9547 -1.4594 10 6 6.9429 -4.4516 -0.8808 11 1 7.3360 -3.9961 0.0162 12 6 7.5925 -5.5406 -1.4489 13 7 7.1152 -6.0939 -2.5411 14 14 9.1453 -6.2172 -0.6610 15 1 8.7828 -7.2648 0.3272 16 1 10.0164 -6.8061 -1.7096 17 1 9.8709 -5.1186 0.0259 18 6 3.2894 -1.5698 0.6674 19 6 2.0771 -0.7908 1.2105 20 1 1.3202 -1.4795 1.5859 21 7 2.4971 0.1288 2.2707 22 6 2.5240 -0.2875 3.5523 23 8 2.2009 -1.4236 3.8277 24 6 2.9567 0.6582 4.6430 25 1 2.2906 1.5208 4.6637 26 6 2.9050 -0.0607 5.9946 27 6 3.4206 0.8849 7.0837 28 6 4.8363 1.3427 6.7228 29 8 4.8187 1.9757 5.4417 30 6 4.3901 1.1250 4.3765 31 1 -0.3634 0.4641 0.9169 32 1 -0.3633 0.5620 -0.8603 33 1 -0.3633 -1.0261 -0.0566 34 1 1.4560 -1.6687 -1.4108 35 1 2.1417 -0.1599 -2.0931 36 1 3.1578 -3.1299 -1.5690 37 1 4.1418 -2.0272 -2.5609 38 1 5.4505 -4.3641 -2.2647 39 1 7.5685 -6.8544 -2.9375 40 1 4.1887 -1.2850 1.2135 41 1 3.1161 -2.6415 0.7651 42 1 2.7559 1.0373 2.0505 43 1 3.5324 -0.9512 5.9578 44 1 1.8774 -0.3477 6.2174 45 1 3.4395 0.3628 8.0403 46 1 2.7641 1.7522 7.1538 47 1 5.5009 0.4793 6.6926 48 1 5.1920 2.0493 7.4726 49 1 4.4244 1.6749 3.4359 50 1 5.0490 0.2589 4.3154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206532229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:41 Heat of formation + Delta-G solvation = -147.347882 kcal Electronic energy + Delta-G solvation = -30522.935582 eV Core-core repulsion = 26355.469408 eV Total energy + Delta-G solvation = -4167.466175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65816 -40.74594 -39.76546 -38.98286 -36.13486 -35.49918 -34.65016 -33.74423 -33.30251 -32.34666 -30.07857 -28.64146 -26.85218 -26.16293 -25.73202 -24.88136 -22.80269 -21.81137 -21.70097 -20.92760 -20.68128 -19.85130 -18.41630 -17.85359 -17.67367 -17.31604 -16.96960 -16.68181 -16.54822 -16.24286 -16.08541 -15.66998 -15.58434 -15.31678 -15.03050 -14.67804 -14.61578 -14.21821 -14.07741 -14.00078 -13.58079 -13.55237 -13.31229 -13.22414 -13.05311 -12.95550 -12.68332 -12.62923 -12.45884 -12.30097 -12.18646 -12.14991 -11.94851 -11.84720 -11.67068 -11.51824 -11.42818 -10.95850 -10.53792 -10.32477 -10.11787 -10.02590 -9.38446 -8.50382 -5.99151 1.34263 1.37941 1.49746 1.50889 2.00344 2.09208 2.25491 2.80884 2.83987 3.16050 3.23162 3.52092 3.55314 3.64758 3.74196 3.75081 3.94316 4.00080 4.10239 4.17408 4.21778 4.31681 4.34243 4.40125 4.44871 4.50413 4.57377 4.58875 4.67971 4.69806 4.78267 4.81633 4.85316 4.89977 4.97827 5.01964 5.06198 5.11755 5.19420 5.28409 5.35007 5.37261 5.52656 5.78550 5.90484 6.05882 6.09654 6.48391 6.56435 7.08916 7.17867 7.51323 8.07368 8.67201 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009403 B = 0.003074 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.203329 B = 9106.475674 C =11425.974433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.107 0.893 4 C 0.035 3.965 5 N -0.505 5.505 6 C 0.046 3.954 7 C 0.436 3.564 8 O -0.616 6.616 9 N -0.573 5.573 10 C -0.333 4.333 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.992 3.008 15 H -0.272 1.272 16 H -0.267 1.267 17 H -0.273 1.273 18 C 0.051 3.949 19 C 0.140 3.860 20 H 0.080 0.920 21 N -0.703 5.703 22 C 0.516 3.484 23 O -0.583 6.583 24 C -0.131 4.131 25 H 0.134 0.866 26 C -0.106 4.106 27 C -0.145 4.145 28 C 0.047 3.953 29 O -0.386 6.386 30 C 0.073 3.927 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.065 0.935 41 H 0.008 0.992 42 H 0.416 0.584 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.044 0.956 48 H 0.118 0.882 49 H 0.115 0.885 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 17.521 9.397 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 H 0.125 0.875 4 C -0.092 4.092 5 N -0.230 5.230 6 C -0.085 4.085 7 C 0.223 3.777 8 O -0.503 6.503 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.192 1.192 17 H -0.198 1.198 18 C -0.079 4.079 19 C 0.033 3.967 20 H 0.098 0.902 21 N -0.355 5.355 22 C 0.303 3.697 23 O -0.462 6.462 24 C -0.152 4.152 25 H 0.152 0.848 26 C -0.144 4.144 27 C -0.183 4.183 28 C -0.029 4.029 29 O -0.304 6.304 30 C -0.004 4.004 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.135 0.865 38 H 0.230 0.770 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.027 0.973 42 H 0.254 0.746 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.136 0.864 49 H 0.133 0.867 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.852 17.497 10.024 24.465 hybrid contribution 0.413 -1.960 -0.171 2.010 sum -13.438 15.538 9.853 22.784 Atomic orbital electron populations 1.21745 0.92050 1.02367 1.03229 1.22331 0.97106 0.99944 0.91058 0.87487 1.23548 0.87205 0.99440 0.99045 1.64607 1.24426 1.32247 1.01717 1.22025 0.94055 0.93289 0.99140 1.20809 0.88024 0.82338 0.86497 1.90484 1.69524 1.61999 1.28246 1.41914 1.24292 1.28145 1.26650 1.19631 1.03114 1.13236 1.10321 0.90567 1.26030 1.02279 0.96368 0.96492 1.69668 1.41958 1.24020 1.20419 0.84952 0.77308 0.78238 0.77989 1.19786 1.19178 1.19791 1.23040 0.98351 0.96209 0.90276 1.21926 0.94579 0.92044 0.88124 0.90224 1.45965 1.67583 1.16358 1.05593 1.20994 0.76366 0.88064 0.84275 1.90700 1.50108 1.21870 1.83534 1.21983 1.00092 0.99249 0.93860 0.84808 1.21424 1.02456 0.97798 0.92751 1.22179 0.97216 1.00058 0.98828 1.22869 0.96485 0.98569 0.84979 1.87941 1.87179 1.38617 1.16690 1.22492 0.91510 0.94749 0.91681 0.91886 0.89900 0.92994 0.92765 0.87215 0.91644 0.86473 0.76996 0.91221 0.91659 0.97350 0.74642 0.93428 0.90897 0.88974 0.89480 0.93743 0.86406 0.86699 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.16 71.98 0.66 -1.17 16 2 C -0.09 -1.53 3.37 -9.59 -0.03 -1.57 16 3 H 0.11 1.59 7.75 -2.39 -0.02 1.57 16 4 C 0.03 0.75 6.00 86.65 0.52 1.27 16 5 N -0.51 -16.36 5.26 -887.57 -4.67 -21.03 16 6 C 0.05 1.66 5.48 85.56 0.47 2.13 16 7 C 0.44 21.51 7.36 87.66 0.64 22.16 16 8 O -0.62 -34.95 13.37 -3.07 -0.04 -34.99 16 9 N -0.57 -30.37 5.29 -306.98 -1.62 -31.99 16 10 C -0.33 -19.51 9.68 84.04 0.81 -18.70 16 11 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 12 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 13 N -0.92 -50.61 13.05 21.66 0.28 -50.33 16 14 Si 0.99 44.07 29.55 68.60 2.03 46.10 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 C 0.05 1.84 4.86 86.45 0.42 2.26 16 19 C 0.14 3.66 2.92 45.87 0.13 3.79 16 20 H 0.08 2.34 7.26 -2.39 -0.02 2.32 16 21 N -0.70 -16.00 4.91 -438.37 -2.15 -18.15 16 22 C 0.52 13.80 7.16 87.66 0.63 14.43 16 23 O -0.58 -21.25 15.62 -3.05 -0.05 -21.30 16 24 C -0.13 -2.58 2.73 -11.45 -0.03 -2.61 16 25 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 26 C -0.11 -2.17 4.62 30.71 0.14 -2.03 16 27 C -0.15 -2.09 6.14 30.68 0.19 -1.90 16 28 C 0.05 0.77 6.84 72.01 0.49 1.26 16 29 O -0.39 -7.96 10.77 -148.98 -1.60 -9.57 16 30 C 0.07 1.53 6.00 72.01 0.43 1.96 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 34 H 0.05 1.11 7.73 -2.39 -0.02 1.10 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 2.14 7.89 -2.39 -0.02 2.12 16 37 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 38 H 0.40 19.89 7.90 -92.71 -0.73 19.16 16 39 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.07 2.90 6.53 -2.39 -0.02 2.89 16 41 H 0.01 0.35 7.59 -2.39 -0.02 0.33 16 42 H 0.42 6.73 7.85 -92.71 -0.73 6.00 16 43 H 0.05 1.22 8.03 -2.39 -0.02 1.20 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.12 1.99 7.64 -2.39 -0.02 1.97 16 50 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -77.64 396.26 -2.39 -80.03 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: -0.51 Total: 40.13 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 5.95 Total: 21.10 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -8.16 Total: -121.50 kcal Atomic # 8 Polarization: -64.16 SS G_CDS: -1.69 Total: -65.85 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -77.64 -2.39 -80.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206532229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.319 kcal (2) G-P(sol) polarization free energy of solvation -77.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds