Wall clock time and date at job start Tue Mar 31 2020 23:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 110.34908 * 2 1 4 4 C 1.54296 * 110.47708 * 237.77871 * 2 1 3 5 5 N 1.47898 * 107.08345 * 242.53305 * 4 2 1 6 6 C 1.46899 * 111.00005 * 214.01050 * 5 4 2 7 7 C 1.50701 * 109.47112 * 300.97769 * 6 5 4 8 8 O 1.21290 * 119.99754 * 354.04461 * 7 6 5 9 9 N 1.34776 * 119.99923 * 174.03096 * 7 6 5 10 10 C 1.37096 * 119.99746 * 180.02562 * 9 7 6 11 11 H 1.07995 * 120.00212 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99704 * 180.02562 * 10 9 7 13 13 N 1.31405 * 120.00182 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99845 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.46955 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46977 * 119.99951 * 14 12 10 17 17 H 1.48500 * 109.46971 * 240.00060 * 14 12 10 18 18 C 1.48531 * 105.82252 * 334.52372 * 5 4 2 19 19 C 1.54594 * 110.30608 * 122.14277 * 2 1 3 20 20 H 1.09006 * 110.72431 * 22.33266 * 19 2 1 21 21 N 1.46501 * 110.72215 * 259.23647 * 19 2 1 22 22 C 1.34775 * 120.00004 * 157.45386 * 21 19 2 23 23 O 1.21280 * 119.99943 * 359.97438 * 22 21 19 24 24 C 1.50702 * 119.99985 * 179.97438 * 22 21 19 25 25 H 1.09000 * 109.57372 * 300.15524 * 24 22 21 26 26 C 1.53177 * 109.52197 * 179.97438 * 24 22 21 27 27 C 1.53180 * 109.03861 * 183.11673 * 26 24 22 28 28 C 1.53098 * 109.16252 * 56.97718 * 27 26 24 29 29 O 1.42905 * 109.42573 * 302.39044 * 28 27 26 30 30 C 1.42920 * 114.08462 * 61.14979 * 29 28 27 31 31 H 1.08995 * 109.47124 * 297.85774 * 1 2 3 32 32 H 1.09007 * 109.46632 * 57.86090 * 1 2 3 33 33 H 1.09002 * 109.47120 * 177.85273 * 1 2 3 34 34 H 1.09000 * 110.02283 * 123.10904 * 4 2 1 35 35 H 1.09000 * 109.94640 * 1.92072 * 4 2 1 36 36 H 1.08998 * 109.47334 * 60.98528 * 6 5 4 37 37 H 1.09008 * 109.47269 * 180.98431 * 6 5 4 38 38 H 0.97003 * 119.99965 * 0.02562 * 9 7 6 39 39 H 0.97001 * 120.00041 * 180.02562 * 13 12 10 40 40 H 1.09003 * 110.67223 * 280.77158 * 18 5 4 41 41 H 1.09002 * 110.67141 * 157.63742 * 18 5 4 42 42 H 0.96996 * 120.00141 * 337.44631 * 21 19 2 43 43 H 1.08998 * 109.54519 * 63.24905 * 26 24 22 44 44 H 1.09006 * 109.54407 * 302.97741 * 26 24 22 45 45 H 1.09003 * 109.52074 * 297.07548 * 27 26 24 46 46 H 1.08999 * 109.52868 * 176.88731 * 27 26 24 47 47 H 1.09002 * 109.47813 * 62.37586 * 28 27 26 48 48 H 1.08999 * 109.47869 * 182.40405 * 28 27 26 49 49 H 1.09004 * 109.47806 * 178.86916 * 30 29 28 50 50 H 1.08997 * 109.48829 * 58.84218 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0699 -0.7707 -1.2229 5 7 2.8327 -1.9273 -0.7054 6 6 3.9777 -2.2335 -1.5732 7 6 3.4861 -2.5376 -2.9649 8 8 2.2955 -2.6090 -3.1854 9 7 4.3693 -2.7300 -3.9646 10 6 3.9219 -3.0061 -5.2308 11 1 2.8619 -3.0691 -5.4272 12 6 4.8326 -3.2050 -6.2614 13 7 6.1224 -3.1289 -6.0222 14 14 4.2231 -3.5806 -7.9868 15 1 2.7384 -3.6118 -7.9914 16 1 4.6995 -2.5282 -8.9200 17 1 4.7469 -4.9007 -8.4203 18 6 3.2849 -1.5383 0.6549 19 6 2.0666 -0.7714 1.2276 20 1 1.3160 -1.4660 1.6049 21 7 2.4865 0.1570 2.2803 22 6 2.5504 -0.2598 3.5603 23 8 2.2598 -1.4034 3.8409 24 6 2.9829 0.6950 4.6431 25 1 3.9898 1.0548 4.4318 26 6 2.9690 -0.0243 5.9954 27 6 3.3344 0.9755 7.0969 28 6 2.3545 2.1511 7.0539 29 8 2.3947 2.7562 5.7599 30 6 2.0165 1.8813 4.6949 31 1 -0.3633 0.4802 0.9085 32 1 -0.3633 0.5467 -0.8703 33 1 -0.3633 -1.0270 -0.0385 34 1 2.7245 -0.1271 -1.8105 35 1 1.2406 -1.1184 -1.8389 36 1 4.6496 -1.3758 -1.6045 37 1 4.5111 -3.0987 -1.1792 38 1 5.3214 -2.6731 -3.7882 39 1 6.7581 -3.2673 -6.7417 40 1 4.1575 -0.8875 0.5989 41 1 3.5005 -2.4217 1.2560 42 1 2.7186 1.0717 2.0560 43 1 3.6961 -0.8362 5.9841 44 1 1.9737 -0.4269 6.1841 45 1 4.3487 1.3407 6.9354 46 1 3.2731 0.4856 8.0686 47 1 1.3457 1.7909 7.2555 48 1 2.6356 2.8863 7.8079 49 1 2.0542 2.4223 3.7493 50 1 1.0033 1.5176 4.8655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206532230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:46 Heat of formation + Delta-G solvation = -122.057529 kcal Electronic energy + Delta-G solvation = -29869.232955 eV Core-core repulsion = 25702.863452 eV Total energy + Delta-G solvation = -4166.369503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78888 -39.57635 -38.64020 -37.59762 -34.67560 -34.01050 -33.83408 -32.76772 -31.74218 -31.21557 -28.94743 -27.08661 -25.66924 -25.33216 -24.79939 -23.78213 -21.70497 -20.88507 -20.74271 -19.96354 -19.14000 -17.89898 -17.55783 -16.83067 -16.71207 -16.22162 -15.89537 -15.53001 -15.34411 -15.10796 -14.57200 -14.40350 -14.28751 -14.04401 -13.88075 -13.74466 -13.49211 -13.27594 -13.19418 -12.98669 -12.77752 -12.33414 -12.10454 -11.99911 -11.78664 -11.58653 -11.51233 -11.41325 -11.38561 -11.18518 -10.95705 -10.86639 -10.84314 -10.60007 -10.34911 -10.23432 -10.17578 -9.87182 -9.50892 -9.27065 -8.44927 -8.01867 -7.93558 -6.42467 -3.83180 2.33751 2.81143 3.15681 3.26338 3.33490 3.36310 3.89988 4.07092 4.14256 4.26858 4.33779 4.34312 4.44783 4.49864 4.63915 4.65474 4.81146 4.86558 4.90406 5.06145 5.09703 5.19519 5.24017 5.28423 5.31572 5.36155 5.39424 5.42993 5.50067 5.67568 5.68111 5.74084 5.80749 5.84518 5.86188 5.93788 5.96654 6.08002 6.17783 6.26987 6.34734 6.52391 6.63653 7.17295 7.18988 7.24734 7.54768 7.95764 8.05613 8.60905 9.17450 9.53584 10.05172 10.75387 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028437 B = 0.001906 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.393646 B =14686.160269 C =15061.966202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 H 0.075 0.925 4 C 0.051 3.949 5 N -0.489 5.489 6 C 0.037 3.963 7 C 0.443 3.557 8 O -0.578 6.578 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.024 3.976 19 C 0.145 3.855 20 H 0.106 0.894 21 N -0.721 5.721 22 C 0.520 3.480 23 O -0.530 6.530 24 C -0.144 4.144 25 H 0.107 0.893 26 C -0.103 4.103 27 C -0.157 4.157 28 C 0.056 3.944 29 O -0.377 6.377 30 C 0.072 3.928 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.399 0.601 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 12.661 24.134 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 H 0.094 0.906 4 C -0.077 4.077 5 N -0.214 5.214 6 C -0.094 4.094 7 C 0.228 3.772 8 O -0.462 6.462 9 N -0.201 5.201 10 C -0.427 4.427 11 H 0.122 0.878 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.105 4.105 19 C 0.040 3.960 20 H 0.124 0.876 21 N -0.373 5.373 22 C 0.305 3.695 23 O -0.406 6.406 24 C -0.166 4.166 25 H 0.125 0.875 26 C -0.141 4.141 27 C -0.194 4.194 28 C -0.020 4.020 29 O -0.295 6.295 30 C -0.005 4.005 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.121 0.879 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.234 0.766 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.346 11.461 24.021 27.147 hybrid contribution 1.281 0.662 -1.005 1.757 sum -4.065 12.123 23.016 26.329 Atomic orbital electron populations 1.21799 0.93698 1.02799 1.01375 1.22379 0.97201 0.98894 0.94428 0.90638 1.23004 0.99511 0.90168 0.95045 1.64512 1.20132 1.36139 1.00583 1.22098 0.92357 1.01208 0.93766 1.19699 0.87178 0.84732 0.85570 1.90506 1.15904 1.56268 1.83480 1.41871 1.08412 1.61984 1.07849 1.19749 0.94655 1.44595 0.83729 0.87834 1.25268 0.94934 0.97503 1.00310 1.69618 1.00762 1.50054 1.33901 0.85801 0.79118 0.77896 0.81535 1.19208 1.20796 1.20743 1.23626 0.96055 0.99400 0.91451 1.22006 0.96597 0.91074 0.86339 0.87616 1.46113 1.69192 1.15038 1.06920 1.20422 0.77252 0.88606 0.83210 1.90734 1.48024 1.19467 1.82379 1.22043 1.02578 0.96550 0.95437 0.87547 1.21412 1.03616 0.97571 0.91471 1.22235 1.00634 0.96875 0.99699 1.22663 0.98590 0.95728 0.85060 1.87975 1.89191 1.37284 1.15087 1.22505 0.96362 0.90158 0.91485 0.93009 0.92145 0.91640 0.93985 0.87932 0.93479 0.89082 0.77510 0.91933 0.93763 0.89650 0.76631 0.90510 0.90816 0.90840 0.90313 0.92917 0.88606 0.88371 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.90 37.16 0.33 -1.16 16 2 C -0.11 -1.25 3.33 -89.10 -0.30 -1.55 16 3 H 0.08 0.71 7.73 -51.93 -0.40 0.31 16 4 C 0.05 0.80 5.06 -2.60 -0.01 0.79 16 5 N -0.49 -8.28 5.12 -231.69 -1.19 -9.47 16 6 C 0.04 0.68 5.30 -4.98 -0.03 0.65 16 7 C 0.44 10.45 7.39 -10.98 -0.08 10.37 16 8 O -0.58 -15.43 14.10 5.55 0.08 -15.35 16 9 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 10 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 11 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 14 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 C 0.02 0.33 6.24 -1.90 -0.01 0.32 16 19 C 0.14 1.70 2.92 -66.07 -0.19 1.51 16 20 H 0.11 1.45 7.34 -51.93 -0.38 1.07 16 21 N -0.72 -6.46 5.10 -52.00 -0.27 -6.72 16 22 C 0.52 5.30 7.16 -10.99 -0.08 5.22 16 23 O -0.53 -7.59 15.65 5.56 0.09 -7.50 16 24 C -0.14 -1.07 2.73 -91.63 -0.25 -1.32 16 25 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 26 C -0.10 -0.78 4.62 -26.55 -0.12 -0.90 16 27 C -0.16 -0.89 6.14 -26.59 -0.16 -1.05 16 28 C 0.06 0.33 6.84 37.21 0.25 0.58 16 29 O -0.38 -2.96 10.77 -35.23 -0.38 -3.34 16 30 C 0.07 0.48 6.01 37.21 0.22 0.71 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.69 7.71 -51.93 -0.40 0.29 16 35 H 0.10 1.92 6.58 -51.93 -0.34 1.58 16 36 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 37 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 38 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.04 0.56 7.95 -51.93 -0.41 0.14 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.40 2.51 7.84 -40.82 -0.32 2.19 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.10 0.50 7.66 -51.93 -0.40 0.10 16 50 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -33.15 397.68 -9.09 -42.24 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -8.39 Total: 10.11 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -0.67 Total: 6.21 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.78 Total: -54.39 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.21 Total: -26.18 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.15 -9.09 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206532230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.818 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds