Wall clock time and date at job start Tue Mar 31 2020 23:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 110.34908 * 2 1 4 4 C 1.54296 * 110.47708 * 237.77871 * 2 1 3 5 5 N 1.47898 * 107.08345 * 242.53305 * 4 2 1 6 6 C 1.46899 * 111.00005 * 214.01050 * 5 4 2 7 7 C 1.50701 * 109.47112 * 300.97769 * 6 5 4 8 8 O 1.21290 * 119.99754 * 354.04461 * 7 6 5 9 9 N 1.34776 * 119.99923 * 174.03096 * 7 6 5 10 10 C 1.37096 * 119.99746 * 180.02562 * 9 7 6 11 11 H 1.07995 * 120.00212 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99704 * 180.02562 * 10 9 7 13 13 N 1.31405 * 120.00182 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99845 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.46955 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46977 * 119.99951 * 14 12 10 17 17 H 1.48500 * 109.46971 * 240.00060 * 14 12 10 18 18 C 1.48531 * 105.82252 * 334.52372 * 5 4 2 19 19 C 1.54594 * 110.30608 * 122.14277 * 2 1 3 20 20 H 1.09006 * 110.72431 * 22.33266 * 19 2 1 21 21 N 1.46501 * 110.72215 * 259.23647 * 19 2 1 22 22 C 1.34775 * 120.00004 * 157.45386 * 21 19 2 23 23 O 1.21280 * 119.99943 * 359.97438 * 22 21 19 24 24 C 1.50702 * 119.99985 * 179.97438 * 22 21 19 25 25 H 1.09000 * 109.57372 * 300.15524 * 24 22 21 26 26 C 1.53177 * 109.52197 * 179.97438 * 24 22 21 27 27 C 1.53180 * 109.03861 * 183.11673 * 26 24 22 28 28 C 1.53098 * 109.16252 * 56.97718 * 27 26 24 29 29 O 1.42905 * 109.42573 * 302.39044 * 28 27 26 30 30 C 1.42920 * 114.08462 * 61.14979 * 29 28 27 31 31 H 1.08995 * 109.47124 * 297.85774 * 1 2 3 32 32 H 1.09007 * 109.46632 * 57.86090 * 1 2 3 33 33 H 1.09002 * 109.47120 * 177.85273 * 1 2 3 34 34 H 1.09000 * 110.02283 * 123.10904 * 4 2 1 35 35 H 1.09000 * 109.94640 * 1.92072 * 4 2 1 36 36 H 1.08998 * 109.47334 * 60.98528 * 6 5 4 37 37 H 1.09008 * 109.47269 * 180.98431 * 6 5 4 38 38 H 0.97003 * 119.99965 * 0.02562 * 9 7 6 39 39 H 0.97001 * 120.00041 * 180.02562 * 13 12 10 40 40 H 1.09003 * 110.67223 * 280.77158 * 18 5 4 41 41 H 1.09002 * 110.67141 * 157.63742 * 18 5 4 42 42 H 0.96996 * 120.00141 * 337.44631 * 21 19 2 43 43 H 1.08998 * 109.54519 * 63.24905 * 26 24 22 44 44 H 1.09006 * 109.54407 * 302.97741 * 26 24 22 45 45 H 1.09003 * 109.52074 * 297.07548 * 27 26 24 46 46 H 1.08999 * 109.52868 * 176.88731 * 27 26 24 47 47 H 1.09002 * 109.47813 * 62.37586 * 28 27 26 48 48 H 1.08999 * 109.47869 * 182.40405 * 28 27 26 49 49 H 1.09004 * 109.47806 * 178.86916 * 30 29 28 50 50 H 1.08997 * 109.48829 * 58.84218 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0699 -0.7707 -1.2229 5 7 2.8327 -1.9273 -0.7054 6 6 3.9777 -2.2335 -1.5732 7 6 3.4861 -2.5376 -2.9649 8 8 2.2955 -2.6090 -3.1854 9 7 4.3693 -2.7300 -3.9646 10 6 3.9219 -3.0061 -5.2308 11 1 2.8619 -3.0691 -5.4272 12 6 4.8326 -3.2050 -6.2614 13 7 6.1224 -3.1289 -6.0222 14 14 4.2231 -3.5806 -7.9868 15 1 2.7384 -3.6118 -7.9914 16 1 4.6995 -2.5282 -8.9200 17 1 4.7469 -4.9007 -8.4203 18 6 3.2849 -1.5383 0.6549 19 6 2.0666 -0.7714 1.2276 20 1 1.3160 -1.4660 1.6049 21 7 2.4865 0.1570 2.2803 22 6 2.5504 -0.2598 3.5603 23 8 2.2598 -1.4034 3.8409 24 6 2.9829 0.6950 4.6431 25 1 3.9898 1.0548 4.4318 26 6 2.9690 -0.0243 5.9954 27 6 3.3344 0.9755 7.0969 28 6 2.3545 2.1511 7.0539 29 8 2.3947 2.7562 5.7599 30 6 2.0165 1.8813 4.6949 31 1 -0.3633 0.4802 0.9085 32 1 -0.3633 0.5467 -0.8703 33 1 -0.3633 -1.0270 -0.0385 34 1 2.7245 -0.1271 -1.8105 35 1 1.2406 -1.1184 -1.8389 36 1 4.6496 -1.3758 -1.6045 37 1 4.5111 -3.0987 -1.1792 38 1 5.3214 -2.6731 -3.7882 39 1 6.7581 -3.2673 -6.7417 40 1 4.1575 -0.8875 0.5989 41 1 3.5005 -2.4217 1.2560 42 1 2.7186 1.0717 2.0560 43 1 3.6961 -0.8362 5.9841 44 1 1.9737 -0.4269 6.1841 45 1 4.3487 1.3407 6.9354 46 1 3.2731 0.4856 8.0686 47 1 1.3457 1.7909 7.2555 48 1 2.6356 2.8863 7.8079 49 1 2.0542 2.4223 3.7493 50 1 1.0033 1.5176 4.8655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206532230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:45 Heat of formation + Delta-G solvation = -147.949702 kcal Electronic energy + Delta-G solvation = -29870.355724 eV Core-core repulsion = 25702.863452 eV Total energy + Delta-G solvation = -4167.492272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61273 -40.70942 -39.74993 -38.97705 -36.10824 -35.48818 -34.60944 -33.82612 -33.23238 -32.32751 -30.14437 -28.42624 -26.95387 -26.13570 -25.74951 -24.91171 -22.70322 -21.80890 -21.67173 -20.98985 -20.68305 -19.87382 -18.34845 -17.78650 -17.67433 -17.27485 -16.89613 -16.66232 -16.51339 -16.18687 -15.98574 -15.65479 -15.49711 -15.17451 -14.82716 -14.81225 -14.64577 -14.60490 -13.96985 -13.87774 -13.68420 -13.62068 -13.48822 -13.40754 -12.97229 -12.94866 -12.62649 -12.43557 -12.41705 -12.23171 -12.13599 -12.11856 -11.90093 -11.87903 -11.64964 -11.49929 -11.37983 -10.92728 -10.50388 -10.35897 -10.11642 -10.02275 -9.36353 -8.47867 -5.96445 1.35579 1.41051 1.53181 1.55296 1.98317 2.02848 2.28351 2.82562 2.92999 3.18694 3.26624 3.49903 3.57328 3.62567 3.77739 3.80930 3.88265 3.98341 4.14450 4.19843 4.25019 4.27286 4.34436 4.38912 4.44611 4.48961 4.52207 4.63032 4.64384 4.72101 4.79783 4.81797 4.88244 4.92699 4.95786 5.04343 5.07378 5.12903 5.17426 5.30169 5.33509 5.40322 5.44309 5.81215 5.94622 6.05447 6.16170 6.49323 6.58969 7.11619 7.19394 7.54206 8.09780 8.69845 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028437 B = 0.001906 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.393646 B =14686.160269 C =15061.966202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.108 0.892 4 C 0.052 3.948 5 N -0.513 5.513 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.613 6.613 9 N -0.573 5.573 10 C -0.331 4.331 11 H 0.079 0.921 12 C -0.014 4.014 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.273 1.273 16 H -0.270 1.270 17 H -0.272 1.272 18 C 0.028 3.972 19 C 0.156 3.844 20 H 0.084 0.916 21 N -0.705 5.705 22 C 0.521 3.479 23 O -0.575 6.575 24 C -0.135 4.135 25 H 0.122 0.878 26 C -0.105 4.105 27 C -0.150 4.150 28 C 0.051 3.949 29 O -0.390 6.390 30 C 0.074 3.926 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.417 0.583 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.054 0.946 48 H 0.112 0.888 49 H 0.118 0.882 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 14.641 25.118 29.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.126 0.874 4 C -0.077 4.077 5 N -0.238 5.238 6 C -0.082 4.082 7 C 0.228 3.772 8 O -0.499 6.499 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.097 0.903 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.198 1.198 16 H -0.195 1.195 17 H -0.197 1.197 18 C -0.100 4.100 19 C 0.050 3.950 20 H 0.102 0.898 21 N -0.357 5.357 22 C 0.308 3.692 23 O -0.454 6.454 24 C -0.157 4.157 25 H 0.140 0.860 26 C -0.143 4.143 27 C -0.187 4.187 28 C -0.025 4.025 29 O -0.309 6.309 30 C -0.004 4.004 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.255 0.745 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.073 0.927 48 H 0.130 0.870 49 H 0.136 0.864 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.540 13.483 25.022 28.783 hybrid contribution 1.019 0.016 -1.255 1.617 sum -3.521 13.499 23.766 27.558 Atomic orbital electron populations 1.21772 0.93136 1.01835 1.02666 1.22294 0.97562 0.99664 0.91876 0.87404 1.22896 0.98155 0.90040 0.96559 1.64410 1.20131 1.37442 1.01819 1.21958 0.93044 1.02766 0.90415 1.20657 0.86525 0.82797 0.87225 1.90487 1.17584 1.57297 1.84546 1.41929 1.08783 1.62660 1.07718 1.19693 0.93929 1.46913 0.85521 0.90272 1.26047 0.95031 0.96656 1.03611 1.69676 1.01432 1.49840 1.35228 0.84866 0.78191 0.78252 0.76990 1.19798 1.19492 1.19712 1.23614 0.97456 0.99666 0.89294 1.21672 0.95287 0.91165 0.86923 0.89778 1.45914 1.68478 1.15395 1.05956 1.20905 0.76154 0.88330 0.83777 1.90726 1.50023 1.21589 1.83049 1.22020 1.03542 0.96046 0.94045 0.85969 1.21409 1.02493 0.97873 0.92526 1.22198 1.00730 0.96331 0.99477 1.22821 0.98807 0.96133 0.84775 1.87962 1.89244 1.37852 1.15812 1.22571 0.95713 0.89839 0.92253 0.90781 0.91770 0.93754 0.94692 0.91606 0.91073 0.87672 0.77066 0.91306 0.91845 0.90617 0.74513 0.91714 0.92219 0.90454 0.89147 0.92719 0.87042 0.86394 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.90 71.99 0.64 -2.13 16 2 C -0.09 -2.01 3.33 -9.81 -0.03 -2.04 16 3 H 0.11 1.64 7.73 -2.39 -0.02 1.63 16 4 C 0.05 1.64 5.06 86.55 0.44 2.08 16 5 N -0.51 -17.29 5.12 -886.94 -4.54 -21.83 16 6 C 0.05 1.78 5.30 85.56 0.45 2.24 16 7 C 0.44 21.27 7.39 87.66 0.65 21.91 16 8 O -0.61 -34.06 14.10 -3.06 -0.04 -34.10 16 9 N -0.57 -29.69 5.29 -306.98 -1.62 -31.32 16 10 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 11 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 12 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 13 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 14 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 C 0.03 0.74 6.24 86.65 0.54 1.28 16 19 C 0.16 3.44 2.92 46.20 0.13 3.58 16 20 H 0.08 2.30 7.34 -2.38 -0.02 2.28 16 21 N -0.70 -10.90 5.10 -436.84 -2.23 -13.12 16 22 C 0.52 9.84 7.16 87.66 0.63 10.47 16 23 O -0.58 -16.35 15.65 -3.03 -0.05 -16.40 16 24 C -0.14 -1.74 2.73 -11.45 -0.03 -1.77 16 25 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 26 C -0.10 -1.49 4.62 30.71 0.14 -1.35 16 27 C -0.15 -1.42 6.14 30.69 0.19 -1.23 16 28 C 0.05 0.49 6.84 72.01 0.49 0.98 16 29 O -0.39 -5.13 10.77 -148.98 -1.60 -6.73 16 30 C 0.07 0.80 6.01 72.01 0.43 1.23 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.03 1.13 7.71 -2.39 -0.02 1.12 16 35 H 0.07 2.57 6.58 -2.39 -0.02 2.56 16 36 H 0.07 2.22 8.00 -2.39 -0.02 2.20 16 37 H 0.11 3.48 8.14 -2.38 -0.02 3.46 16 38 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 39 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 40 H 0.06 1.42 7.95 -2.39 -0.02 1.40 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.42 3.65 7.84 -92.71 -0.73 2.92 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.06 1.01 8.03 -2.38 -0.02 0.99 16 45 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 46 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.12 0.78 7.66 -2.38 -0.02 0.76 16 50 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -74.06 397.68 -2.33 -76.38 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.51 Total: 34.66 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 5.96 Total: 16.89 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -8.11 Total: -115.83 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -1.69 Total: -57.23 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -74.06 -2.33 -76.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206532230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.568 kcal (2) G-P(sol) polarization free energy of solvation -74.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds