Wall clock time and date at job start Tue Mar 31 2020 23:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.35085 * 2 1 4 4 C 1.54293 * 110.47699 * 237.77850 * 2 1 3 5 5 N 1.47906 * 107.08572 * 242.52904 * 4 2 1 6 6 C 1.46896 * 111.00257 * 214.01120 * 5 4 2 7 7 C 1.50698 * 109.47518 * 187.26990 * 6 5 4 8 8 O 1.21296 * 119.99466 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00171 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99847 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00290 * 359.97438 * 10 9 7 12 12 C 1.38950 * 119.99943 * 180.02562 * 10 9 7 13 13 N 1.31408 * 120.00058 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00077 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46905 * 60.00011 * 14 12 10 16 16 H 1.48497 * 109.47208 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47213 * 300.00237 * 14 12 10 18 18 C 1.48536 * 105.81760 * 334.52094 * 5 4 2 19 19 C 1.54597 * 110.31213 * 122.13866 * 2 1 3 20 20 H 1.09004 * 110.72095 * 22.33788 * 19 2 1 21 21 N 1.46497 * 110.72498 * 259.23878 * 19 2 1 22 22 C 1.34777 * 120.00081 * 157.44927 * 21 19 2 23 23 O 1.21285 * 119.99910 * 0.02562 * 22 21 19 24 24 C 1.50701 * 120.00149 * 179.97438 * 22 21 19 25 25 C 1.52999 * 109.47175 * 179.97438 * 24 22 21 26 26 H 1.08997 * 110.83830 * 302.81332 * 25 24 22 27 27 C 1.54806 * 110.90888 * 179.15943 * 25 24 22 28 28 C 1.54099 * 104.19470 * 220.92551 * 27 25 24 29 29 O 1.43889 * 107.37252 * 358.10337 * 28 27 25 30 30 C 1.44388 * 106.89814 * 26.27302 * 29 28 27 31 31 H 1.09001 * 109.47389 * 297.85133 * 1 2 3 32 32 H 1.08994 * 109.47211 * 57.85915 * 1 2 3 33 33 H 1.09008 * 109.46622 * 177.86094 * 1 2 3 34 34 H 1.09002 * 110.02479 * 123.10147 * 4 2 1 35 35 H 1.08996 * 109.78391 * 1.82303 * 4 2 1 36 36 H 1.09006 * 109.47111 * 307.27105 * 6 5 4 37 37 H 1.09003 * 109.47591 * 67.26785 * 6 5 4 38 38 H 0.96998 * 120.00049 * 359.97438 * 9 7 6 39 39 H 0.97002 * 119.99799 * 179.97438 * 13 12 10 40 40 H 1.08994 * 110.66856 * 280.76989 * 18 5 4 41 41 H 1.08999 * 110.80507 * 157.70364 * 18 5 4 42 42 H 0.96995 * 119.99980 * 337.44761 * 21 19 2 43 43 H 1.09000 * 109.46459 * 60.00714 * 24 22 21 44 44 H 1.08993 * 109.47619 * 300.00471 * 24 22 21 45 45 H 1.09002 * 110.48575 * 339.60669 * 27 25 24 46 46 H 1.09004 * 110.48517 * 102.11658 * 27 25 24 47 47 H 1.09001 * 109.87936 * 117.39322 * 28 27 25 48 48 H 1.08993 * 109.88056 * 238.39954 * 28 27 25 49 49 H 1.09002 * 110.61854 * 201.57804 * 30 29 28 50 50 H 1.09000 * 110.62045 * 78.73713 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0698 -0.7707 -1.2228 5 7 2.8328 -1.9273 -0.7054 6 6 3.9777 -2.2335 -1.5732 7 6 4.6234 -3.5172 -1.1189 8 8 4.1735 -4.1181 -0.1661 9 7 5.6998 -3.9979 -1.7719 10 6 6.2868 -5.1660 -1.3588 11 1 5.8869 -5.7007 -0.5100 12 6 7.3970 -5.6614 -2.0317 13 7 7.8840 -5.0106 -3.0642 14 14 8.1973 -7.2527 -1.4685 15 1 7.2086 -8.3581 -1.5450 16 1 9.3544 -7.5625 -2.3462 17 1 8.6646 -7.1027 -0.0670 18 6 3.2850 -1.5382 0.6549 19 6 2.0667 -0.7713 1.2277 20 1 1.3162 -1.4659 1.6050 21 7 2.4866 0.1571 2.2802 22 6 2.5505 -0.2597 3.5603 23 8 2.2608 -1.4035 3.8408 24 6 2.9830 0.6952 4.6430 25 6 2.9687 -0.0243 5.9932 26 1 1.9807 -0.4334 6.2041 27 6 3.4287 0.9222 7.1285 28 6 4.3282 0.0395 8.0153 29 8 4.3248 -1.2832 7.4487 30 6 4.0487 -1.1353 6.0392 31 1 -0.3634 0.4801 0.9086 32 1 -0.3633 0.5467 -0.8701 33 1 -0.3633 -1.0270 -0.0384 34 1 2.7243 -0.1270 -1.8106 35 1 1.2385 -1.1186 -1.8360 36 1 3.6347 -2.3436 -2.6020 37 1 4.7035 -1.4221 -1.5171 38 1 6.0589 -3.5179 -2.5345 39 1 8.6593 -5.3563 -3.5337 40 1 4.1575 -0.8873 0.5987 41 1 3.5025 -2.4199 1.2576 42 1 2.7186 1.0718 2.0559 43 1 2.2973 1.5419 4.6758 44 1 3.9910 1.0519 4.4316 45 1 3.9971 1.7584 6.7213 46 1 2.5703 1.2850 7.6940 47 1 5.3441 0.4343 8.0219 48 1 3.9347 0.0122 9.0314 49 1 3.6603 -2.0655 5.6245 50 1 4.9446 -0.8220 5.5034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206699636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:19 Heat of formation + Delta-G solvation = -117.392285 kcal Electronic energy + Delta-G solvation = -29977.979124 eV Core-core repulsion = 25811.811922 eV Total energy + Delta-G solvation = -4166.167203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47309 -39.54356 -38.64547 -37.61212 -34.57214 -33.82505 -33.75430 -32.61585 -31.18445 -30.25530 -29.04126 -27.57978 -26.73729 -25.23788 -23.92312 -22.93421 -21.64195 -20.82836 -20.70104 -19.98790 -19.15879 -17.84698 -17.44992 -16.71143 -16.46602 -16.03671 -15.80961 -15.71211 -14.95103 -14.90379 -14.61634 -14.45422 -14.23619 -13.91781 -13.84349 -13.66322 -13.56894 -13.18310 -13.00985 -12.76234 -12.40829 -12.32990 -12.05988 -11.88179 -11.71559 -11.59279 -11.47111 -11.31602 -11.25613 -11.11423 -11.01535 -10.93385 -10.92253 -10.63318 -10.40332 -10.17279 -9.88754 -9.82702 -9.44473 -9.11284 -8.45316 -7.98054 -7.89989 -6.37930 -3.78391 2.52465 2.93878 3.23775 3.28660 3.33890 3.78106 3.94762 4.06166 4.16375 4.31282 4.40334 4.46662 4.57912 4.64685 4.69843 4.72572 4.78445 5.03036 5.07666 5.12811 5.22615 5.26722 5.29209 5.32516 5.33777 5.40170 5.43001 5.47601 5.50715 5.63633 5.68616 5.78345 5.81668 5.86855 5.89228 5.92541 5.96606 6.05144 6.11461 6.30423 6.36863 6.51364 6.70019 7.14169 7.21723 7.35773 7.59152 8.10269 8.12641 8.66288 9.22560 9.58530 10.11077 10.79957 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008879 B = 0.002825 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.920215 B = 9909.887263 C =12598.204583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.077 0.923 4 C 0.038 3.962 5 N -0.489 5.489 6 C 0.038 3.962 7 C 0.444 3.556 8 O -0.573 6.573 9 N -0.566 5.566 10 C -0.297 4.297 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.904 5.904 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.035 3.965 19 C 0.143 3.857 20 H 0.105 0.895 21 N -0.724 5.724 22 C 0.509 3.491 23 O -0.526 6.526 24 C -0.131 4.131 25 C -0.105 4.105 26 H 0.094 0.906 27 C -0.153 4.153 28 C 0.045 3.955 29 O -0.378 6.378 30 C 0.052 3.948 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.038 0.962 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.056 0.944 48 H 0.081 0.919 49 H 0.108 0.892 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.716 20.569 11.144 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.095 0.905 4 C -0.091 4.091 5 N -0.213 5.213 6 C -0.094 4.094 7 C 0.229 3.771 8 O -0.457 6.457 9 N -0.203 5.203 10 C -0.427 4.427 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.546 5.546 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.094 4.094 19 C 0.038 3.962 20 H 0.123 0.877 21 N -0.376 5.376 22 C 0.295 3.705 23 O -0.401 6.401 24 C -0.171 4.171 25 C -0.124 4.124 26 H 0.112 0.888 27 C -0.191 4.191 28 C -0.032 4.032 29 O -0.297 6.297 30 C -0.024 4.024 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.123 0.877 42 H 0.231 0.769 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.100 0.900 49 H 0.126 0.874 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.344 18.591 11.994 24.863 hybrid contribution 1.445 1.071 -0.780 1.960 sum -9.899 19.662 11.214 24.706 Atomic orbital electron populations 1.21811 0.93764 1.02709 1.01472 1.22283 0.96948 0.98853 0.94537 0.90510 1.23054 0.98437 0.91438 0.96134 1.64431 1.21115 1.34067 1.01701 1.22072 0.92204 0.97355 0.97730 1.19707 0.83271 0.87632 0.86502 1.90532 1.64568 1.60941 1.29624 1.41844 1.26018 1.22993 1.29483 1.19654 1.09545 0.99417 1.14050 0.87979 1.25241 0.97120 0.99632 0.95955 1.69604 1.24824 1.39963 1.20209 0.85931 0.78420 0.81494 0.78472 1.19868 1.21017 1.19904 1.23623 0.94801 1.00079 0.90926 1.22041 0.97136 0.90846 0.86154 0.87672 1.46022 1.69691 1.14826 1.07027 1.20652 0.77484 0.88973 0.83391 1.90763 1.47752 1.19358 1.82236 1.21673 1.03727 0.98588 0.93145 1.22474 1.01624 0.95626 0.92662 0.88759 1.23017 1.00332 0.98716 0.96996 1.23143 0.98881 0.83458 0.97735 1.88944 1.92796 1.26130 1.21855 1.23725 0.96058 1.00563 0.82089 0.92737 0.92405 0.91668 0.93697 0.89894 0.89208 0.93374 0.77579 0.91898 0.94350 0.87689 0.76881 0.88528 0.88605 0.90508 0.90346 0.92537 0.90046 0.87359 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.90 37.16 0.33 -0.88 16 2 C -0.11 -1.04 3.33 -89.10 -0.30 -1.34 16 3 H 0.08 0.59 7.73 -51.93 -0.40 0.19 16 4 C 0.04 0.45 6.36 -2.59 -0.02 0.44 16 5 N -0.49 -8.19 4.96 -231.69 -1.15 -9.34 16 6 C 0.04 0.69 5.18 -4.98 -0.03 0.66 16 7 C 0.44 10.73 7.58 -10.99 -0.08 10.64 16 8 O -0.57 -15.99 14.42 5.54 0.08 -15.91 16 9 N -0.57 -14.62 5.29 -10.96 -0.06 -14.68 16 10 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 11 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 14 Si 0.93 21.54 29.55 -169.99 -5.02 16.51 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 C 0.03 0.57 5.54 -1.90 -0.01 0.56 16 19 C 0.14 1.80 2.92 -66.07 -0.19 1.61 16 20 H 0.11 1.58 7.34 -51.93 -0.38 1.20 16 21 N -0.72 -7.04 5.19 -52.00 -0.27 -7.31 16 22 C 0.51 5.73 7.62 -10.98 -0.08 5.64 16 23 O -0.53 -8.37 14.26 5.55 0.08 -8.29 16 24 C -0.13 -0.96 5.11 -27.88 -0.14 -1.10 16 25 C -0.10 -0.95 2.71 -88.61 -0.24 -1.19 16 26 H 0.09 0.97 8.06 -51.93 -0.42 0.55 16 27 C -0.15 -1.03 6.60 -25.21 -0.17 -1.20 16 28 C 0.04 0.39 7.70 37.73 0.29 0.68 16 29 O -0.38 -4.86 11.54 -35.23 -0.41 -5.27 16 30 C 0.05 0.62 6.45 38.21 0.25 0.87 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.04 0.49 7.77 -51.93 -0.40 0.08 16 35 H 0.08 0.95 7.69 -51.93 -0.40 0.55 16 36 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 37 H 0.05 0.79 7.90 -51.93 -0.41 0.38 16 38 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.04 0.60 7.85 -51.93 -0.41 0.20 16 41 H 0.10 2.22 6.92 -51.93 -0.36 1.86 16 42 H 0.40 2.53 8.36 -40.82 -0.34 2.18 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.08 0.40 7.86 -51.93 -0.41 -0.01 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.11 1.56 7.13 -51.93 -0.37 1.19 16 50 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -35.06 399.98 -8.98 -44.04 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -8.35 Total: 11.15 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -0.63 Total: 7.29 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.75 Total: -55.54 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.25 Total: -29.48 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.06 -8.98 -44.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206699636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.351 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds