Wall clock time and date at job start Tue Mar 31 2020 23:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.35085 * 2 1 4 4 C 1.54293 * 110.47699 * 237.77850 * 2 1 3 5 5 N 1.47906 * 107.08572 * 242.52904 * 4 2 1 6 6 C 1.46896 * 111.00257 * 214.01120 * 5 4 2 7 7 C 1.50698 * 109.47518 * 187.26990 * 6 5 4 8 8 O 1.21296 * 119.99466 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00171 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99847 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00290 * 359.97438 * 10 9 7 12 12 C 1.38950 * 119.99943 * 180.02562 * 10 9 7 13 13 N 1.31408 * 120.00058 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00077 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46905 * 60.00011 * 14 12 10 16 16 H 1.48497 * 109.47208 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47213 * 300.00237 * 14 12 10 18 18 C 1.48536 * 105.81760 * 334.52094 * 5 4 2 19 19 C 1.54597 * 110.31213 * 122.13866 * 2 1 3 20 20 H 1.09004 * 110.72095 * 22.33788 * 19 2 1 21 21 N 1.46497 * 110.72498 * 259.23878 * 19 2 1 22 22 C 1.34777 * 120.00081 * 157.44927 * 21 19 2 23 23 O 1.21285 * 119.99910 * 0.02562 * 22 21 19 24 24 C 1.50701 * 120.00149 * 179.97438 * 22 21 19 25 25 C 1.52999 * 109.47175 * 179.97438 * 24 22 21 26 26 H 1.08997 * 110.83830 * 302.81332 * 25 24 22 27 27 C 1.54806 * 110.90888 * 179.15943 * 25 24 22 28 28 C 1.54099 * 104.19470 * 220.92551 * 27 25 24 29 29 O 1.43889 * 107.37252 * 358.10337 * 28 27 25 30 30 C 1.44388 * 106.89814 * 26.27302 * 29 28 27 31 31 H 1.09001 * 109.47389 * 297.85133 * 1 2 3 32 32 H 1.08994 * 109.47211 * 57.85915 * 1 2 3 33 33 H 1.09008 * 109.46622 * 177.86094 * 1 2 3 34 34 H 1.09002 * 110.02479 * 123.10147 * 4 2 1 35 35 H 1.08996 * 109.78391 * 1.82303 * 4 2 1 36 36 H 1.09006 * 109.47111 * 307.27105 * 6 5 4 37 37 H 1.09003 * 109.47591 * 67.26785 * 6 5 4 38 38 H 0.96998 * 120.00049 * 359.97438 * 9 7 6 39 39 H 0.97002 * 119.99799 * 179.97438 * 13 12 10 40 40 H 1.08994 * 110.66856 * 280.76989 * 18 5 4 41 41 H 1.08999 * 110.80507 * 157.70364 * 18 5 4 42 42 H 0.96995 * 119.99980 * 337.44761 * 21 19 2 43 43 H 1.09000 * 109.46459 * 60.00714 * 24 22 21 44 44 H 1.08993 * 109.47619 * 300.00471 * 24 22 21 45 45 H 1.09002 * 110.48575 * 339.60669 * 27 25 24 46 46 H 1.09004 * 110.48517 * 102.11658 * 27 25 24 47 47 H 1.09001 * 109.87936 * 117.39322 * 28 27 25 48 48 H 1.08993 * 109.88056 * 238.39954 * 28 27 25 49 49 H 1.09002 * 110.61854 * 201.57804 * 30 29 28 50 50 H 1.09000 * 110.62045 * 78.73713 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0698 -0.7707 -1.2228 5 7 2.8328 -1.9273 -0.7054 6 6 3.9777 -2.2335 -1.5732 7 6 4.6234 -3.5172 -1.1189 8 8 4.1735 -4.1181 -0.1661 9 7 5.6998 -3.9979 -1.7719 10 6 6.2868 -5.1660 -1.3588 11 1 5.8869 -5.7007 -0.5100 12 6 7.3970 -5.6614 -2.0317 13 7 7.8840 -5.0106 -3.0642 14 14 8.1973 -7.2527 -1.4685 15 1 7.2086 -8.3581 -1.5450 16 1 9.3544 -7.5625 -2.3462 17 1 8.6646 -7.1027 -0.0670 18 6 3.2850 -1.5382 0.6549 19 6 2.0667 -0.7713 1.2277 20 1 1.3162 -1.4659 1.6050 21 7 2.4866 0.1571 2.2802 22 6 2.5505 -0.2597 3.5603 23 8 2.2608 -1.4035 3.8408 24 6 2.9830 0.6952 4.6430 25 6 2.9687 -0.0243 5.9932 26 1 1.9807 -0.4334 6.2041 27 6 3.4287 0.9222 7.1285 28 6 4.3282 0.0395 8.0153 29 8 4.3248 -1.2832 7.4487 30 6 4.0487 -1.1353 6.0392 31 1 -0.3634 0.4801 0.9086 32 1 -0.3633 0.5467 -0.8701 33 1 -0.3633 -1.0270 -0.0384 34 1 2.7243 -0.1270 -1.8106 35 1 1.2385 -1.1186 -1.8360 36 1 3.6347 -2.3436 -2.6020 37 1 4.7035 -1.4221 -1.5171 38 1 6.0589 -3.5179 -2.5345 39 1 8.6593 -5.3563 -3.5337 40 1 4.1575 -0.8873 0.5987 41 1 3.5025 -2.4199 1.2576 42 1 2.7186 1.0718 2.0559 43 1 2.2973 1.5419 4.6758 44 1 3.9910 1.0519 4.4316 45 1 3.9971 1.7584 6.7213 46 1 2.5703 1.2850 7.6940 47 1 5.3441 0.4343 8.0219 48 1 3.9347 0.0122 9.0314 49 1 3.6603 -2.0655 5.6245 50 1 4.9446 -0.8220 5.5034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206699636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:18 Heat of formation + Delta-G solvation = -146.452100 kcal Electronic energy + Delta-G solvation = -29979.239253 eV Core-core repulsion = 25811.811922 eV Total energy + Delta-G solvation = -4167.427331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.42592 -40.63294 -39.92560 -39.09628 -36.08348 -35.48554 -34.56221 -33.64298 -33.24907 -30.97919 -30.15924 -28.83763 -27.65836 -26.79428 -25.31578 -23.74010 -22.74634 -21.75844 -21.56747 -21.04220 -20.79280 -19.90897 -18.31345 -17.87307 -17.62332 -17.26145 -16.73443 -16.59801 -16.50957 -16.21669 -16.05306 -15.75266 -15.59744 -15.22517 -14.79966 -14.75230 -14.54784 -14.46796 -14.09397 -13.81916 -13.76512 -13.51328 -13.18330 -13.00357 -12.96504 -12.84802 -12.58566 -12.46098 -12.43939 -12.26408 -12.19110 -12.15018 -11.94522 -11.86260 -11.66220 -11.55725 -11.50079 -10.82574 -10.67194 -10.33364 -10.09369 -10.02147 -9.31726 -8.48831 -5.97338 1.36971 1.38441 1.49472 1.65302 2.03877 2.08987 2.27226 2.85780 3.01635 3.17479 3.35982 3.51924 3.54000 3.64486 3.78292 3.86885 3.94843 3.99261 4.16935 4.21488 4.26840 4.28013 4.33485 4.42385 4.49227 4.51134 4.57192 4.58352 4.68539 4.75079 4.83510 4.86686 4.88699 4.90733 4.95121 5.04684 5.09621 5.12862 5.14344 5.26549 5.37991 5.38233 5.50395 5.82626 5.90743 5.96333 6.10136 6.58309 6.59586 7.11497 7.32389 7.54493 8.12121 8.68493 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008879 B = 0.002825 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.920215 B = 9909.887263 C =12598.204583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.115 0.885 4 C 0.036 3.964 5 N -0.518 5.518 6 C 0.052 3.948 7 C 0.437 3.563 8 O -0.619 6.619 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.073 0.927 12 C -0.010 4.010 13 N -0.919 5.919 14 Si 0.990 3.010 15 H -0.273 1.273 16 H -0.266 1.266 17 H -0.274 1.274 18 C 0.039 3.961 19 C 0.153 3.847 20 H 0.071 0.929 21 N -0.707 5.707 22 C 0.500 3.500 23 O -0.584 6.584 24 C -0.119 4.119 25 C -0.102 4.102 26 H 0.075 0.925 27 C -0.139 4.139 28 C 0.032 3.968 29 O -0.413 6.413 30 C 0.047 3.953 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.419 0.581 43 H 0.138 0.862 44 H 0.121 0.879 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.067 0.933 48 H 0.092 0.908 49 H 0.067 0.933 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.817 24.650 10.427 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.133 0.867 4 C -0.091 4.091 5 N -0.243 5.243 6 C -0.079 4.079 7 C 0.225 3.775 8 O -0.505 6.505 9 N -0.212 5.212 10 C -0.464 4.464 11 H 0.091 0.909 12 C -0.210 4.210 13 N -0.560 5.560 14 Si 0.813 3.187 15 H -0.199 1.199 16 H -0.190 1.190 17 H -0.199 1.199 18 C -0.091 4.091 19 C 0.046 3.954 20 H 0.089 0.911 21 N -0.361 5.361 22 C 0.288 3.712 23 O -0.463 6.463 24 C -0.158 4.158 25 C -0.121 4.121 26 H 0.093 0.907 27 C -0.176 4.176 28 C -0.044 4.044 29 O -0.333 6.333 30 C -0.029 4.029 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.258 0.742 43 H 0.156 0.844 44 H 0.139 0.861 45 H 0.123 0.877 46 H 0.115 0.885 47 H 0.086 0.914 48 H 0.110 0.890 49 H 0.086 0.914 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.441 22.751 11.241 27.836 hybrid contribution 1.463 -0.246 -0.521 1.572 sum -9.978 22.505 10.720 26.851 Atomic orbital electron populations 1.21789 0.92704 1.01881 1.03027 1.22273 0.97669 0.99748 0.91354 0.86742 1.23200 0.98343 0.90273 0.97275 1.64289 1.20859 1.37458 1.01709 1.21936 0.93042 0.94217 0.98744 1.20898 0.82298 0.89105 0.85240 1.90515 1.65616 1.62838 1.31516 1.41902 1.26705 1.22659 1.29931 1.19573 1.11196 1.01132 1.14485 0.90864 1.25985 0.96859 1.02439 0.95745 1.69653 1.25015 1.40959 1.20371 0.85042 0.77836 0.77566 0.78207 1.19854 1.19019 1.19944 1.23393 0.96968 0.98032 0.90679 1.21700 0.94551 0.91237 0.87876 0.91106 1.45851 1.68853 1.15335 1.06018 1.21533 0.76287 0.88845 0.84497 1.90762 1.50267 1.22161 1.83134 1.21717 1.05995 0.98079 0.90010 1.22405 0.99435 0.95313 0.94959 0.90687 1.22992 1.00830 0.98241 0.95560 1.23453 1.00295 0.82099 0.98574 1.88897 1.93060 1.29140 1.22199 1.23651 0.97214 1.00102 0.81955 0.91826 0.90082 0.93841 0.91206 0.89229 0.86779 0.90910 0.76925 0.91213 0.93573 0.94017 0.74232 0.84389 0.86104 0.87699 0.88514 0.91445 0.88971 0.91422 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.90 71.98 0.64 -1.35 16 2 C -0.09 -1.51 3.33 -9.81 -0.03 -1.55 16 3 H 0.11 1.12 7.73 -2.38 -0.02 1.10 16 4 C 0.04 0.77 6.36 86.55 0.55 1.32 16 5 N -0.52 -17.34 4.96 -886.95 -4.39 -21.74 16 6 C 0.05 1.85 5.18 85.56 0.44 2.29 16 7 C 0.44 21.98 7.58 87.66 0.66 22.64 16 8 O -0.62 -36.92 14.42 -3.08 -0.04 -36.96 16 9 N -0.57 -30.63 5.29 -306.99 -1.62 -32.25 16 10 C -0.33 -19.80 9.68 84.04 0.81 -18.98 16 11 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 12 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 13 N -0.92 -50.51 13.05 21.66 0.28 -50.23 16 14 Si 0.99 44.55 29.55 68.60 2.03 46.58 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 C 0.04 1.32 5.54 86.65 0.48 1.80 16 19 C 0.15 3.82 2.92 46.20 0.13 3.96 16 20 H 0.07 2.29 7.34 -2.38 -0.02 2.27 16 21 N -0.71 -12.69 5.19 -436.83 -2.27 -14.96 16 22 C 0.50 11.17 7.62 87.66 0.67 11.84 16 23 O -0.58 -20.22 14.26 -3.04 -0.04 -20.27 16 24 C -0.12 -1.42 5.11 29.85 0.15 -1.27 16 25 C -0.10 -1.77 2.71 -9.49 -0.03 -1.80 16 26 H 0.07 1.59 8.06 -2.39 -0.02 1.57 16 27 C -0.14 -1.48 6.60 31.58 0.21 -1.28 16 28 C 0.03 0.52 7.70 72.35 0.56 1.07 16 29 O -0.41 -11.15 11.54 -148.98 -1.72 -12.87 16 30 C 0.05 1.22 6.45 72.67 0.47 1.69 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.07 1.19 7.77 -2.39 -0.02 1.17 16 35 H 0.09 1.81 7.69 -2.39 -0.02 1.79 16 36 H 0.11 3.50 8.11 -2.38 -0.02 3.48 16 37 H 0.07 2.24 7.90 -2.39 -0.02 2.22 16 38 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 39 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.05 1.45 7.85 -2.39 -0.02 1.44 16 41 H 0.04 1.94 6.92 -2.39 -0.02 1.93 16 42 H 0.42 3.71 8.36 -92.71 -0.78 2.94 16 43 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.12 0.94 8.10 -2.39 -0.02 0.92 16 45 H 0.10 0.58 7.86 -2.39 -0.02 0.56 16 46 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.07 2.25 7.13 -2.39 -0.02 2.23 16 50 H 0.06 1.44 8.02 -2.39 -0.02 1.42 16 Total: -1.00 -85.63 399.98 -2.14 -87.77 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.55 Total: 34.64 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 6.19 Total: 20.29 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -8.00 Total: -119.18 kcal Atomic # 8 Polarization: -68.30 SS G_CDS: -1.81 Total: -70.10 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -85.63 -2.14 -87.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206699636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.678 kcal (2) G-P(sol) polarization free energy of solvation -85.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds