Wall clock time and date at job start Tue Mar 31 2020 23:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.35392 * 2 1 4 4 C 1.54296 * 110.48048 * 237.76997 * 2 1 3 5 5 N 1.47896 * 107.08793 * 242.53644 * 4 2 1 6 6 C 1.46897 * 111.00133 * 214.01035 * 5 4 2 7 7 C 1.50705 * 109.47172 * 187.26954 * 6 5 4 8 8 O 1.21289 * 119.99688 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00085 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99881 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00233 * 0.02562 * 10 9 7 12 12 C 1.38954 * 119.99926 * 180.02562 * 10 9 7 13 13 N 1.31420 * 119.99826 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00095 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47269 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47185 * 120.00304 * 14 12 10 17 17 H 1.48507 * 109.47189 * 240.00239 * 14 12 10 18 18 C 1.48530 * 105.82109 * 334.52214 * 5 4 2 19 19 C 1.54598 * 110.30355 * 122.13402 * 2 1 3 20 20 H 1.09002 * 110.72709 * 22.34177 * 19 2 1 21 21 N 1.46501 * 110.72544 * 259.22816 * 19 2 1 22 22 C 1.34780 * 119.99907 * 157.44984 * 21 19 2 23 23 O 1.21285 * 119.99735 * 0.02562 * 22 21 19 24 24 C 1.50697 * 119.99832 * 180.02562 * 22 21 19 25 25 C 1.53001 * 109.46693 * 180.02562 * 24 22 21 26 26 H 1.09000 * 110.98808 * 57.74400 * 25 24 22 27 27 C 1.55312 * 111.15817 * 181.96687 * 25 24 22 28 28 C 1.54380 * 102.25056 * 152.06900 * 27 25 24 29 29 O 1.43245 * 107.59000 * 338.64209 * 28 27 25 30 30 C 1.43641 * 109.97171 * 358.29008 * 29 28 27 31 31 H 1.08995 * 109.47675 * 297.86932 * 1 2 3 32 32 H 1.09004 * 109.46960 * 57.86472 * 1 2 3 33 33 H 1.08999 * 109.47669 * 177.86093 * 1 2 3 34 34 H 1.09003 * 110.02440 * 123.10533 * 4 2 1 35 35 H 1.08997 * 109.94205 * 1.92074 * 4 2 1 36 36 H 1.08996 * 109.46871 * 307.26636 * 6 5 4 37 37 H 1.08992 * 109.47424 * 67.26851 * 6 5 4 38 38 H 0.97001 * 119.99733 * 0.02562 * 9 7 6 39 39 H 0.97001 * 119.99635 * 179.97438 * 13 12 10 40 40 H 1.09005 * 110.67296 * 280.77484 * 18 5 4 41 41 H 1.08999 * 110.81499 * 157.70997 * 18 5 4 42 42 H 0.96997 * 120.00427 * 337.45902 * 21 19 2 43 43 H 1.09001 * 109.46918 * 60.00485 * 24 22 21 44 44 H 1.09002 * 109.47275 * 300.00189 * 24 22 21 45 45 H 1.08999 * 110.84840 * 33.87824 * 27 25 24 46 46 H 1.08999 * 110.84966 * 270.25622 * 27 25 24 47 47 H 1.08996 * 109.83192 * 219.13077 * 28 27 25 48 48 H 1.09002 * 109.83458 * 98.15431 * 28 27 25 49 49 H 1.08996 * 110.31178 * 143.33952 * 30 29 28 50 50 H 1.09000 * 110.30769 * 265.41581 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0698 -0.7709 -1.2227 5 7 2.8326 -1.9274 -0.7051 6 6 3.9777 -2.2338 -1.5729 7 6 4.6231 -3.5175 -1.1184 8 8 4.1738 -4.1178 -0.1651 9 7 5.6997 -3.9984 -1.7712 10 6 6.2872 -5.1660 -1.3573 11 1 5.8871 -5.7005 -0.5085 12 6 7.3974 -5.6616 -2.0301 13 7 7.8846 -5.0108 -3.0627 14 14 8.1975 -7.2527 -1.4667 15 1 7.4636 -7.7867 -0.2913 16 1 8.1543 -8.2461 -2.5697 17 1 9.6103 -6.9907 -1.0916 18 6 3.2848 -1.5383 0.6551 19 6 2.0664 -0.7712 1.2278 20 1 1.3159 -1.4659 1.6051 21 7 2.4865 0.1573 2.2803 22 6 2.5503 -0.2594 3.5605 23 8 2.2603 -1.4032 3.8410 24 6 2.9818 0.6958 4.6431 25 6 2.9688 -0.0240 5.9932 26 1 3.6180 -0.8994 5.9751 27 6 3.3608 0.9398 7.1462 28 6 2.6215 0.3240 8.3535 29 8 1.5559 -0.4850 7.8419 30 6 1.5259 -0.4073 6.4079 31 1 -0.3634 0.4803 0.9084 32 1 -0.3633 0.5467 -0.8703 33 1 -0.3634 -1.0269 -0.0384 34 1 2.7244 -0.1273 -1.8105 35 1 1.2406 -1.1186 -1.8387 36 1 3.6347 -2.3440 -2.6016 37 1 4.7034 -1.4225 -1.5168 38 1 6.0592 -3.5181 -2.5334 39 1 8.6598 -5.3566 -3.5321 40 1 4.1574 -0.8874 0.5991 41 1 3.5023 -2.4200 1.2580 42 1 2.7186 1.0719 2.0559 43 1 2.2957 1.5421 4.6756 44 1 3.9898 1.0531 4.4319 45 1 3.0029 1.9498 6.9461 46 1 4.4388 0.9339 7.3073 47 1 2.2150 1.1166 8.9817 48 1 3.3087 -0.2928 8.9327 49 1 1.2539 -1.3731 5.9822 50 1 0.8216 0.3596 6.0852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206699638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:22 Heat of formation + Delta-G solvation = -117.835347 kcal Electronic energy + Delta-G solvation = -29841.710899 eV Core-core repulsion = 25675.524484 eV Total energy + Delta-G solvation = -4166.186415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48768 -39.58374 -38.67465 -37.62312 -34.57914 -33.83768 -33.79012 -32.62070 -31.19141 -30.33435 -29.06743 -27.62421 -26.79979 -25.24771 -23.92657 -22.74479 -21.73108 -20.96807 -20.71018 -19.97378 -19.16876 -17.85588 -17.47338 -16.79177 -16.58034 -16.10892 -15.88206 -15.59880 -14.91736 -14.84180 -14.67033 -14.43370 -14.23086 -13.93885 -13.85110 -13.61297 -13.57271 -13.27913 -13.16429 -12.75623 -12.48140 -12.27695 -12.08814 -11.91735 -11.71629 -11.65048 -11.48300 -11.36310 -11.26026 -11.09443 -11.05843 -11.04526 -10.96100 -10.63775 -10.31454 -10.19414 -9.91040 -9.71755 -9.47494 -9.11497 -8.46051 -7.98744 -7.90821 -6.39100 -3.79431 2.51852 2.92683 3.18453 3.28844 3.36911 3.66962 3.93755 4.03827 4.10079 4.30063 4.35809 4.44774 4.56828 4.62674 4.68518 4.72514 4.81358 4.96820 5.04424 5.11764 5.18851 5.25796 5.28167 5.30483 5.34255 5.39474 5.40232 5.47593 5.48162 5.57590 5.68341 5.78367 5.81336 5.84575 5.86699 5.90995 5.94826 6.04690 6.11298 6.29603 6.36432 6.50974 6.77753 7.13773 7.21283 7.35205 7.58488 8.09689 8.12019 8.65230 9.21720 9.57629 10.10063 10.78918 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.002494 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.070209 B =11224.624457 C =13300.790769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.077 0.923 4 C 0.038 3.962 5 N -0.489 5.489 6 C 0.038 3.962 7 C 0.444 3.556 8 O -0.573 6.573 9 N -0.567 5.567 10 C -0.295 4.295 11 H 0.103 0.897 12 C 0.020 3.980 13 N -0.904 5.904 14 Si 0.928 3.072 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.035 3.965 19 C 0.143 3.857 20 H 0.105 0.895 21 N -0.724 5.724 22 C 0.509 3.491 23 O -0.526 6.526 24 C -0.130 4.130 25 C -0.107 4.107 26 H 0.098 0.902 27 C -0.153 4.153 28 C 0.050 3.950 29 O -0.387 6.387 30 C 0.058 3.942 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.391 0.609 39 H 0.270 0.730 40 H 0.038 0.962 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.100 0.900 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.435 20.380 11.209 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.095 0.905 4 C -0.091 4.091 5 N -0.213 5.213 6 C -0.094 4.094 7 C 0.229 3.771 8 O -0.456 6.456 9 N -0.204 5.204 10 C -0.425 4.425 11 H 0.121 0.879 12 C -0.181 4.181 13 N -0.546 5.546 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.094 4.094 19 C 0.038 3.962 20 H 0.123 0.877 21 N -0.376 5.376 22 C 0.295 3.705 23 O -0.401 6.401 24 C -0.170 4.170 25 C -0.126 4.126 26 H 0.116 0.884 27 C -0.191 4.191 28 C -0.026 4.026 29 O -0.306 6.306 30 C -0.018 4.018 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.224 0.776 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.231 0.769 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.118 0.882 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.257 18.479 12.080 24.781 hybrid contribution 1.710 0.970 -0.827 2.133 sum -9.547 19.449 11.253 24.414 Atomic orbital electron populations 1.21810 0.93747 1.02720 1.01489 1.22277 0.96962 0.98844 0.94510 0.90501 1.23048 0.98450 0.91433 0.96125 1.64425 1.21112 1.34082 1.01700 1.22071 0.92210 0.97342 0.97739 1.19716 0.83266 0.87619 0.86478 1.90532 1.64578 1.60955 1.29565 1.41862 1.26002 1.23033 1.29519 1.19751 1.09420 0.99367 1.13956 0.87883 1.25252 0.97166 0.99658 0.95989 1.69626 1.24790 1.39871 1.20275 0.85810 0.78741 0.81148 0.78733 1.19185 1.20761 1.20820 1.23624 0.94808 1.00074 0.90921 1.22045 0.97133 0.90841 0.86155 0.87656 1.46020 1.69680 1.14832 1.07021 1.20640 0.77517 0.88947 0.83395 1.90765 1.47749 1.19351 1.82223 1.21612 1.03919 0.98456 0.93007 1.22621 0.98485 0.98868 0.92660 0.88413 1.23206 1.01768 0.99467 0.94636 1.23090 0.89319 0.94226 0.95999 1.88420 1.52353 1.69165 1.20656 1.23510 0.95240 1.02908 0.80143 0.92720 0.92404 0.91660 0.93725 0.89891 0.89199 0.93365 0.77579 0.92010 0.94357 0.87705 0.76871 0.88690 0.88301 0.90416 0.89765 0.91619 0.91294 0.88208 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.90 37.16 0.33 -0.88 16 2 C -0.11 -1.04 3.33 -89.10 -0.30 -1.34 16 3 H 0.08 0.59 7.73 -51.93 -0.40 0.19 16 4 C 0.04 0.45 6.35 -2.60 -0.02 0.44 16 5 N -0.49 -8.19 4.96 -231.70 -1.15 -9.33 16 6 C 0.04 0.69 5.18 -4.98 -0.03 0.66 16 7 C 0.44 10.71 7.59 -10.98 -0.08 10.63 16 8 O -0.57 -15.97 14.42 5.55 0.08 -15.89 16 9 N -0.57 -14.60 5.29 -10.96 -0.06 -14.65 16 10 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 11 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 12 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 13 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 14 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.03 0.57 5.54 -1.89 -0.01 0.56 16 19 C 0.14 1.80 2.92 -66.06 -0.19 1.61 16 20 H 0.11 1.58 7.34 -51.93 -0.38 1.20 16 21 N -0.72 -7.03 5.19 -52.00 -0.27 -7.30 16 22 C 0.51 5.71 7.63 -10.99 -0.08 5.63 16 23 O -0.53 -8.37 14.28 5.55 0.08 -8.29 16 24 C -0.13 -0.94 5.23 -27.88 -0.15 -1.08 16 25 C -0.11 -0.96 2.67 -88.36 -0.24 -1.19 16 26 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 27 C -0.15 -1.01 6.50 -24.78 -0.16 -1.17 16 28 C 0.05 0.42 7.79 37.88 0.30 0.71 16 29 O -0.39 -4.59 11.36 -35.23 -0.40 -4.99 16 30 C 0.06 0.62 6.54 38.19 0.25 0.87 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.04 0.48 7.77 -51.93 -0.40 0.08 16 35 H 0.08 0.95 7.70 -51.93 -0.40 0.55 16 36 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 37 H 0.05 0.79 7.90 -51.93 -0.41 0.38 16 38 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.04 0.60 7.85 -51.93 -0.41 0.19 16 41 H 0.10 2.22 6.92 -51.93 -0.36 1.86 16 42 H 0.40 2.51 8.36 -40.82 -0.34 2.17 16 43 H 0.09 0.47 8.10 -51.93 -0.42 0.04 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.40 8.03 -51.93 -0.42 -0.02 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 1.29 7.14 -51.93 -0.37 0.92 16 50 H 0.05 0.51 8.00 -51.93 -0.42 0.10 16 LS Contribution 400.19 15.07 6.03 6.03 Total: -1.00 -35.05 400.19 -8.96 -44.02 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -8.36 Total: 10.73 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -0.62 Total: 7.38 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.75 Total: -55.41 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.24 Total: -29.17 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.05 -8.96 -44.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206699638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.819 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds