Wall clock time and date at job start Tue Mar 31 2020 23:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.35392 * 2 1 4 4 C 1.54296 * 110.48048 * 237.76997 * 2 1 3 5 5 N 1.47896 * 107.08793 * 242.53644 * 4 2 1 6 6 C 1.46897 * 111.00133 * 214.01035 * 5 4 2 7 7 C 1.50705 * 109.47172 * 187.26954 * 6 5 4 8 8 O 1.21289 * 119.99688 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00085 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99881 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00233 * 0.02562 * 10 9 7 12 12 C 1.38954 * 119.99926 * 180.02562 * 10 9 7 13 13 N 1.31420 * 119.99826 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00095 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47269 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47185 * 120.00304 * 14 12 10 17 17 H 1.48507 * 109.47189 * 240.00239 * 14 12 10 18 18 C 1.48530 * 105.82109 * 334.52214 * 5 4 2 19 19 C 1.54598 * 110.30355 * 122.13402 * 2 1 3 20 20 H 1.09002 * 110.72709 * 22.34177 * 19 2 1 21 21 N 1.46501 * 110.72544 * 259.22816 * 19 2 1 22 22 C 1.34780 * 119.99907 * 157.44984 * 21 19 2 23 23 O 1.21285 * 119.99735 * 0.02562 * 22 21 19 24 24 C 1.50697 * 119.99832 * 180.02562 * 22 21 19 25 25 C 1.53001 * 109.46693 * 180.02562 * 24 22 21 26 26 H 1.09000 * 110.98808 * 57.74400 * 25 24 22 27 27 C 1.55312 * 111.15817 * 181.96687 * 25 24 22 28 28 C 1.54380 * 102.25056 * 152.06900 * 27 25 24 29 29 O 1.43245 * 107.59000 * 338.64209 * 28 27 25 30 30 C 1.43641 * 109.97171 * 358.29008 * 29 28 27 31 31 H 1.08995 * 109.47675 * 297.86932 * 1 2 3 32 32 H 1.09004 * 109.46960 * 57.86472 * 1 2 3 33 33 H 1.08999 * 109.47669 * 177.86093 * 1 2 3 34 34 H 1.09003 * 110.02440 * 123.10533 * 4 2 1 35 35 H 1.08997 * 109.94205 * 1.92074 * 4 2 1 36 36 H 1.08996 * 109.46871 * 307.26636 * 6 5 4 37 37 H 1.08992 * 109.47424 * 67.26851 * 6 5 4 38 38 H 0.97001 * 119.99733 * 0.02562 * 9 7 6 39 39 H 0.97001 * 119.99635 * 179.97438 * 13 12 10 40 40 H 1.09005 * 110.67296 * 280.77484 * 18 5 4 41 41 H 1.08999 * 110.81499 * 157.70997 * 18 5 4 42 42 H 0.96997 * 120.00427 * 337.45902 * 21 19 2 43 43 H 1.09001 * 109.46918 * 60.00485 * 24 22 21 44 44 H 1.09002 * 109.47275 * 300.00189 * 24 22 21 45 45 H 1.08999 * 110.84840 * 33.87824 * 27 25 24 46 46 H 1.08999 * 110.84966 * 270.25622 * 27 25 24 47 47 H 1.08996 * 109.83192 * 219.13077 * 28 27 25 48 48 H 1.09002 * 109.83458 * 98.15431 * 28 27 25 49 49 H 1.08996 * 110.31178 * 143.33952 * 30 29 28 50 50 H 1.09000 * 110.30769 * 265.41581 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0698 -0.7709 -1.2227 5 7 2.8326 -1.9274 -0.7051 6 6 3.9777 -2.2338 -1.5729 7 6 4.6231 -3.5175 -1.1184 8 8 4.1738 -4.1178 -0.1651 9 7 5.6997 -3.9984 -1.7712 10 6 6.2872 -5.1660 -1.3573 11 1 5.8871 -5.7005 -0.5085 12 6 7.3974 -5.6616 -2.0301 13 7 7.8846 -5.0108 -3.0627 14 14 8.1975 -7.2527 -1.4667 15 1 7.4636 -7.7867 -0.2913 16 1 8.1543 -8.2461 -2.5697 17 1 9.6103 -6.9907 -1.0916 18 6 3.2848 -1.5383 0.6551 19 6 2.0664 -0.7712 1.2278 20 1 1.3159 -1.4659 1.6051 21 7 2.4865 0.1573 2.2803 22 6 2.5503 -0.2594 3.5605 23 8 2.2603 -1.4032 3.8410 24 6 2.9818 0.6958 4.6431 25 6 2.9688 -0.0240 5.9932 26 1 3.6180 -0.8994 5.9751 27 6 3.3608 0.9398 7.1462 28 6 2.6215 0.3240 8.3535 29 8 1.5559 -0.4850 7.8419 30 6 1.5259 -0.4073 6.4079 31 1 -0.3634 0.4803 0.9084 32 1 -0.3633 0.5467 -0.8703 33 1 -0.3634 -1.0269 -0.0384 34 1 2.7244 -0.1273 -1.8105 35 1 1.2406 -1.1186 -1.8387 36 1 3.6347 -2.3440 -2.6016 37 1 4.7034 -1.4225 -1.5168 38 1 6.0592 -3.5181 -2.5334 39 1 8.6598 -5.3566 -3.5321 40 1 4.1574 -0.8874 0.5991 41 1 3.5023 -2.4200 1.2580 42 1 2.7186 1.0719 2.0559 43 1 2.2957 1.5421 4.6756 44 1 3.9898 1.0531 4.4319 45 1 3.0029 1.9498 6.9461 46 1 4.4388 0.9339 7.3073 47 1 2.2150 1.1166 8.9817 48 1 3.3087 -0.2928 8.9327 49 1 1.2539 -1.3731 5.9822 50 1 0.8216 0.3596 6.0852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206699638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:21 Heat of formation + Delta-G solvation = -146.767010 kcal Electronic energy + Delta-G solvation = -29842.965470 eV Core-core repulsion = 25675.524484 eV Total energy + Delta-G solvation = -4167.440986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42717 -40.63814 -39.93732 -39.10270 -36.08521 -35.48883 -34.57052 -33.64547 -33.24828 -31.02728 -30.17295 -28.85489 -27.70524 -26.79786 -25.31517 -23.49992 -22.77661 -21.87142 -21.62192 -21.04339 -20.78426 -19.91072 -18.30971 -17.88287 -17.63206 -17.41093 -16.78620 -16.56611 -16.45701 -16.25797 -15.95068 -15.76723 -15.44599 -15.32344 -14.79670 -14.68136 -14.57665 -14.36555 -14.13163 -14.01774 -13.76264 -13.52804 -13.18670 -13.00891 -12.97993 -12.81379 -12.60301 -12.44256 -12.42998 -12.30937 -12.20221 -12.15431 -11.90231 -11.84497 -11.68623 -11.66112 -11.50707 -10.84222 -10.50185 -10.33572 -10.09303 -10.01884 -9.31713 -8.49160 -5.97491 1.33609 1.38666 1.53088 1.64826 2.03471 2.08267 2.27198 2.85253 2.96669 3.17120 3.34757 3.47192 3.53185 3.64373 3.76986 3.89666 3.94069 3.96538 4.16743 4.24592 4.26740 4.28666 4.33324 4.43007 4.47100 4.50657 4.57193 4.58709 4.68702 4.75740 4.80797 4.86976 4.90421 4.91286 4.94953 5.04590 5.09050 5.11228 5.14171 5.28096 5.37955 5.38599 5.50167 5.82710 5.96309 6.04471 6.10159 6.57930 6.59372 7.11592 7.31965 7.54375 8.11948 8.68561 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.002494 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.070209 B =11224.624457 C =13300.790769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.115 0.885 4 C 0.036 3.964 5 N -0.518 5.518 6 C 0.052 3.948 7 C 0.437 3.563 8 O -0.619 6.619 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.073 0.927 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.278 1.278 16 H -0.268 1.268 17 H -0.268 1.268 18 C 0.039 3.961 19 C 0.153 3.847 20 H 0.071 0.929 21 N -0.707 5.707 22 C 0.500 3.500 23 O -0.584 6.584 24 C -0.117 4.117 25 C -0.109 4.109 26 H 0.065 0.935 27 C -0.138 4.138 28 C 0.038 3.962 29 O -0.417 6.417 30 C 0.057 3.943 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.047 0.953 41 H 0.041 0.959 42 H 0.420 0.580 43 H 0.133 0.867 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.074 24.309 10.333 28.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.133 0.867 4 C -0.091 4.091 5 N -0.243 5.243 6 C -0.079 4.079 7 C 0.225 3.775 8 O -0.505 6.505 9 N -0.212 5.212 10 C -0.461 4.461 11 H 0.091 0.909 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.814 3.186 15 H -0.203 1.203 16 H -0.193 1.193 17 H -0.193 1.193 18 C -0.091 4.091 19 C 0.046 3.954 20 H 0.089 0.911 21 N -0.360 5.360 22 C 0.288 3.712 23 O -0.463 6.463 24 C -0.156 4.156 25 C -0.129 4.129 26 H 0.084 0.916 27 C -0.176 4.176 28 C -0.038 4.038 29 O -0.338 6.338 30 C -0.019 4.019 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.258 0.742 43 H 0.151 0.849 44 H 0.145 0.855 45 H 0.124 0.876 46 H 0.117 0.883 47 H 0.102 0.898 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.884 22.484 11.165 27.362 hybrid contribution 1.563 -0.299 -0.522 1.674 sum -9.321 22.186 10.643 26.313 Atomic orbital electron populations 1.21788 0.92729 1.01882 1.03026 1.22267 0.97651 0.99751 0.91351 0.86725 1.23193 0.98360 0.90275 0.97250 1.64282 1.20878 1.37461 1.01717 1.21935 0.93038 0.94217 0.98737 1.20903 0.82303 0.89092 0.85227 1.90514 1.65636 1.62857 1.31477 1.41915 1.26674 1.22691 1.29953 1.19633 1.11072 1.01076 1.14362 0.90906 1.26000 0.96906 1.02474 0.95779 1.69671 1.25020 1.40886 1.20430 0.84908 0.78012 0.77451 0.78180 1.20264 1.19342 1.19330 1.23394 0.96969 0.98027 0.90668 1.21704 0.94566 0.91233 0.87872 0.91116 1.45848 1.68835 1.15343 1.06009 1.21522 0.76307 0.88828 0.84497 1.90763 1.50258 1.22192 1.83122 1.21649 1.06263 0.97832 0.89886 1.22560 0.96558 0.98850 0.94887 0.91597 1.23185 1.02503 0.99763 0.92107 1.23353 0.88890 0.94489 0.97037 1.88378 1.53785 1.70425 1.21191 1.23457 0.97041 1.01566 0.79882 0.91842 0.90084 0.93842 0.91217 0.89245 0.86785 0.90880 0.76920 0.91245 0.93531 0.94028 0.74219 0.84897 0.85521 0.87621 0.88310 0.89751 0.91465 0.91890 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.90 71.98 0.64 -1.36 16 2 C -0.09 -1.51 3.33 -9.81 -0.03 -1.54 16 3 H 0.11 1.12 7.73 -2.39 -0.02 1.10 16 4 C 0.04 0.78 6.35 86.55 0.55 1.33 16 5 N -0.52 -17.31 4.96 -886.96 -4.40 -21.70 16 6 C 0.05 1.85 5.18 85.56 0.44 2.29 16 7 C 0.44 21.90 7.59 87.66 0.66 22.57 16 8 O -0.62 -36.83 14.42 -3.06 -0.04 -36.88 16 9 N -0.57 -30.50 5.29 -306.98 -1.62 -32.12 16 10 C -0.33 -19.56 9.68 84.04 0.81 -18.75 16 11 H 0.07 4.66 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 13 N -0.92 -50.25 13.05 21.67 0.28 -49.97 16 14 Si 0.99 44.32 29.55 68.60 2.03 46.34 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 C 0.04 1.32 5.54 86.65 0.48 1.80 16 19 C 0.15 3.82 2.92 46.20 0.14 3.95 16 20 H 0.07 2.29 7.34 -2.39 -0.02 2.27 16 21 N -0.71 -12.67 5.19 -436.81 -2.27 -14.93 16 22 C 0.50 11.17 7.63 87.66 0.67 11.84 16 23 O -0.58 -20.24 14.28 -3.04 -0.04 -20.29 16 24 C -0.12 -1.40 5.23 29.85 0.16 -1.25 16 25 C -0.11 -1.90 2.67 -9.33 -0.02 -1.93 16 26 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 27 C -0.14 -1.47 6.50 31.86 0.21 -1.27 16 28 C 0.04 0.59 7.79 72.45 0.56 1.16 16 29 O -0.42 -10.20 11.36 -148.98 -1.69 -11.89 16 30 C 0.06 1.27 6.54 72.65 0.48 1.74 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.18 7.77 -2.39 -0.02 1.16 16 35 H 0.09 1.81 7.70 -2.39 -0.02 1.79 16 36 H 0.11 3.48 8.11 -2.39 -0.02 3.46 16 37 H 0.07 2.23 7.90 -2.39 -0.02 2.21 16 38 H 0.40 19.72 7.90 -92.71 -0.73 18.98 16 39 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.05 1.46 7.85 -2.38 -0.02 1.44 16 41 H 0.04 1.94 6.92 -2.39 -0.02 1.92 16 42 H 0.42 3.69 8.36 -92.71 -0.78 2.92 16 43 H 0.13 0.66 8.10 -2.39 -0.02 0.64 16 44 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.11 0.59 8.03 -2.39 -0.02 0.57 16 46 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.06 1.84 7.14 -2.39 -0.02 1.82 16 50 H 0.07 1.30 8.00 -2.39 -0.02 1.28 16 Total: -1.00 -85.18 400.19 -2.10 -87.28 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.55 Total: 33.77 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 6.21 Total: 20.39 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -8.00 Total: -118.72 kcal Atomic # 8 Polarization: -67.27 SS G_CDS: -1.78 Total: -69.05 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -85.18 -2.10 -87.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206699638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.491 kcal (2) G-P(sol) polarization free energy of solvation -85.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds