Wall clock time and date at job start Tue Mar 31 2020 23:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 110.78389 * 2 1 4 4 C 1.54942 * 110.72142 * 236.75036 * 2 1 3 5 5 N 1.48536 * 103.22418 * 204.22701 * 4 2 1 6 6 C 1.46901 * 110.99521 * 159.72350 * 5 4 2 7 7 C 1.50700 * 109.46900 * 170.00139 * 6 5 4 8 8 O 1.21291 * 120.00026 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99894 * 180.02562 * 7 6 5 10 10 C 1.37096 * 119.99744 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.38956 * 119.99907 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00197 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99978 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47190 * 90.00150 * 14 12 10 16 16 H 1.48499 * 109.46996 * 209.99790 * 14 12 10 17 17 H 1.48498 * 109.47138 * 330.00000 * 14 12 10 18 18 C 1.47900 * 105.82189 * 39.21141 * 5 4 2 19 19 C 1.53998 * 107.05419 * 334.66788 * 18 5 4 20 20 H 1.09006 * 110.30596 * 120.24603 * 19 18 5 21 21 N 1.46503 * 110.30496 * 242.30477 * 19 18 5 22 22 C 1.34772 * 120.00512 * 273.55055 * 21 19 18 23 23 O 1.21282 * 119.99946 * 359.97438 * 22 21 19 24 24 C 1.50700 * 120.00260 * 180.02562 * 22 21 19 25 25 H 1.09005 * 109.47821 * 305.02011 * 24 22 21 26 26 C 1.53089 * 109.48384 * 65.05133 * 24 22 21 27 27 C 1.53175 * 109.16034 * 177.59409 * 26 24 22 28 28 C 1.53176 * 109.04123 * 303.01864 * 27 26 24 29 29 C 1.53092 * 109.16070 * 56.98011 * 28 27 26 30 30 O 1.42900 * 109.48248 * 184.99994 * 24 22 21 31 31 H 1.09010 * 109.47264 * 181.79460 * 1 2 3 32 32 H 1.09005 * 109.47395 * 301.79117 * 1 2 3 33 33 H 1.08995 * 109.47420 * 61.79501 * 1 2 3 34 34 H 1.09004 * 110.66299 * 85.79479 * 4 2 1 35 35 H 1.09000 * 110.66998 * 322.66146 * 4 2 1 36 36 H 1.08996 * 109.47126 * 289.99999 * 6 5 4 37 37 H 1.08996 * 109.47465 * 50.00271 * 6 5 4 38 38 H 0.97000 * 120.00480 * 0.02562 * 9 7 6 39 39 H 0.96995 * 120.00578 * 180.02562 * 13 12 10 40 40 H 1.08998 * 109.91806 * 94.01913 * 18 5 4 41 41 H 1.08995 * 109.91750 * 215.12045 * 18 5 4 42 42 H 0.97010 * 119.99696 * 93.55555 * 21 19 18 43 43 H 1.09000 * 109.52240 * 297.50118 * 26 24 22 44 44 H 1.09001 * 109.52118 * 57.69155 * 26 24 22 45 45 H 1.09006 * 109.54283 * 183.15421 * 27 26 24 46 46 H 1.08999 * 109.54428 * 62.89280 * 27 26 24 47 47 H 1.09001 * 109.52140 * 297.08208 * 28 27 26 48 48 H 1.09000 * 109.57800 * 176.91882 * 28 27 26 49 49 H 1.08997 * 109.48166 * 182.40561 * 29 28 27 50 50 H 1.08999 * 109.47869 * 62.37429 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0782 -0.7946 -1.2119 5 7 3.4317 -1.2092 -0.7622 6 6 3.9210 -2.3498 -1.5482 7 6 5.3768 -2.5858 -1.2382 8 8 5.9504 -1.8736 -0.4413 9 7 6.0417 -3.5875 -1.8472 10 6 7.3659 -3.8025 -1.5648 11 1 7.8764 -3.1689 -0.8546 12 6 8.0515 -4.8350 -2.1930 13 7 7.4308 -5.6051 -3.0582 14 14 9.8561 -5.1275 -1.8088 15 1 9.9727 -6.0752 -0.6715 16 1 10.5296 -5.7007 -3.0017 17 1 10.5004 -3.8393 -1.4477 18 6 3.2893 -1.5710 0.6648 19 6 2.0770 -0.7928 1.2091 20 1 1.3214 -1.4834 1.5839 21 7 2.4971 0.1249 2.2710 22 6 2.5788 -0.3097 3.5441 23 8 2.3041 -1.4605 3.8108 24 6 3.0104 0.6345 4.6365 25 1 3.9730 1.0750 4.3768 26 6 1.9671 1.7437 4.7943 27 6 2.3825 2.6645 5.9458 28 6 2.5412 1.8301 7.2205 29 6 3.5623 0.7175 6.9689 30 8 3.1309 -0.0828 5.8665 31 1 -0.3634 -1.0272 0.0322 32 1 -0.3634 0.5414 0.8735 33 1 -0.3634 0.4857 -0.9056 34 1 2.1443 -0.1557 -2.0926 35 1 1.4559 -1.6665 -1.4137 36 1 3.3463 -3.2401 -1.2931 37 1 3.8060 -2.1351 -2.6105 38 1 5.5833 -4.1564 -2.4853 39 1 7.9093 -6.3260 -3.4965 40 1 3.1160 -2.6428 0.7606 41 1 4.1900 -1.2903 1.2107 42 1 2.7164 1.0455 2.0578 43 1 1.9056 2.3200 3.8711 44 1 0.9955 1.3013 5.0141 45 1 1.6159 3.4239 6.1002 46 1 3.3305 3.1454 5.7043 47 1 1.5812 1.3894 7.4892 48 1 2.8897 2.4674 8.0332 49 1 3.6477 0.0944 7.8591 50 1 4.5321 1.1592 6.7398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206875591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:32 Heat of formation + Delta-G solvation = -117.562802 kcal Electronic energy + Delta-G solvation = -30185.632403 eV Core-core repulsion = 26019.457807 eV Total energy + Delta-G solvation = -4166.174597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57832 -39.49790 -38.34172 -37.51198 -34.59822 -33.98948 -33.72923 -32.72890 -31.67397 -31.16657 -28.88475 -27.41118 -25.98123 -25.14657 -24.27213 -23.73731 -21.58698 -20.79456 -20.60187 -20.14991 -19.01759 -17.78946 -17.58493 -17.04182 -16.26814 -15.96423 -15.84145 -15.35478 -15.20274 -14.90003 -14.60954 -14.55388 -14.44348 -13.90481 -13.86608 -13.69097 -13.28084 -13.16177 -13.03301 -12.94734 -12.57890 -12.33200 -12.07154 -11.88170 -11.83032 -11.62285 -11.48418 -11.44557 -11.32916 -11.17245 -11.01753 -10.87144 -10.80576 -10.78775 -10.35703 -10.17217 -9.85641 -9.63372 -9.44831 -9.07987 -8.46737 -7.95183 -7.89112 -6.36855 -3.77304 2.54943 2.71555 3.21422 3.29453 3.35461 3.78482 3.96125 4.04180 4.25570 4.32151 4.39001 4.40643 4.43205 4.57717 4.64714 4.77836 4.80192 4.89831 5.07536 5.09831 5.19656 5.28533 5.29546 5.31526 5.36357 5.38964 5.40778 5.50445 5.53335 5.59924 5.64118 5.65012 5.75969 5.80966 5.82430 5.86219 5.91201 6.00309 6.07428 6.29746 6.33264 6.59534 6.83825 7.14392 7.22424 7.43972 7.59814 8.11345 8.18311 8.67435 9.23462 9.60049 10.12377 10.81140 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.002583 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.170317 B =10837.864503 C =12727.973850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.089 0.911 4 C 0.037 3.963 5 N -0.490 5.490 6 C 0.036 3.964 7 C 0.445 3.555 8 O -0.577 6.577 9 N -0.567 5.567 10 C -0.296 4.296 11 H 0.102 0.898 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.035 3.965 19 C 0.141 3.859 20 H 0.094 0.906 21 N -0.715 5.715 22 C 0.520 3.480 23 O -0.517 6.517 24 C 0.074 3.926 25 H 0.086 0.914 26 C -0.144 4.144 27 C -0.121 4.121 28 C -0.159 4.159 29 C 0.058 3.942 30 O -0.353 6.353 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.047 0.953 41 H 0.096 0.904 42 H 0.400 0.600 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.905 16.768 11.949 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.092 4.092 5 N -0.214 5.214 6 C -0.096 4.096 7 C 0.231 3.769 8 O -0.460 6.460 9 N -0.204 5.204 10 C -0.426 4.426 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.545 5.545 14 Si 0.756 3.244 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.094 4.094 19 C 0.036 3.964 20 H 0.112 0.888 21 N -0.368 5.368 22 C 0.305 3.695 23 O -0.391 6.391 24 C 0.013 3.987 25 H 0.103 0.897 26 C -0.182 4.182 27 C -0.159 4.159 28 C -0.196 4.196 29 C -0.019 4.019 30 O -0.271 6.271 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.235 0.765 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.117 0.883 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.284 16.437 12.529 25.705 hybrid contribution 0.333 -0.600 -0.353 0.771 sum -14.952 15.837 12.176 24.952 Atomic orbital electron populations 1.21778 0.94002 1.02239 1.01962 1.22321 0.95653 1.00056 0.93788 0.89234 1.23334 0.89722 0.98530 0.97574 1.64499 1.21088 1.33821 1.02014 1.22090 0.96212 0.92351 0.98939 1.19720 0.87796 0.83835 0.85587 1.90507 1.69202 1.48666 1.37617 1.41856 1.10958 1.28339 1.39242 1.19684 0.85570 1.13880 1.23466 0.88000 1.25248 1.00414 0.96081 0.96282 1.69608 1.37512 1.19447 1.27932 0.85869 0.82036 0.78731 0.77718 1.20447 1.20956 1.19440 1.23303 0.98557 0.97941 0.89604 1.21989 0.96405 0.91534 0.86493 0.88794 1.45915 1.69752 1.14717 1.06407 1.20118 0.77793 0.88471 0.83116 1.90739 1.47313 1.18517 1.82492 1.21892 0.99432 0.91608 0.85790 0.89685 1.22137 0.99562 0.96516 1.00030 1.21590 1.02170 0.97700 0.94418 1.22224 1.01083 0.98130 0.98204 1.22672 0.96091 0.93374 0.89724 1.88082 1.88372 1.34562 1.16086 0.92371 0.92429 0.92044 0.89638 0.93488 0.93105 0.89243 0.77543 0.91943 0.93462 0.88606 0.76479 0.90199 0.90412 0.90989 0.91377 0.90878 0.90648 0.88327 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.16 37.16 0.34 -0.78 16 2 C -0.10 -0.99 3.36 -88.76 -0.30 -1.29 16 3 H 0.09 0.82 7.74 -51.93 -0.40 0.42 16 4 C 0.04 0.44 5.96 -1.89 -0.01 0.43 16 5 N -0.49 -8.16 4.91 -231.89 -1.14 -9.30 16 6 C 0.04 0.66 5.27 -4.98 -0.03 0.63 16 7 C 0.45 10.85 7.61 -10.99 -0.08 10.76 16 8 O -0.58 -16.01 14.87 5.55 0.08 -15.93 16 9 N -0.57 -14.77 5.29 -10.96 -0.06 -14.83 16 10 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 11 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -25.08 13.05 55.50 0.72 -24.36 16 14 Si 0.93 21.56 29.55 -169.99 -5.02 16.54 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 C 0.03 0.59 5.65 -2.75 -0.02 0.58 16 19 C 0.14 1.80 2.87 -66.57 -0.19 1.61 16 20 H 0.09 1.29 7.33 -51.93 -0.38 0.91 16 21 N -0.71 -8.19 4.99 -52.49 -0.26 -8.45 16 22 C 0.52 7.20 7.17 -10.99 -0.08 7.12 16 23 O -0.52 -9.62 16.20 -14.30 -0.23 -9.85 16 24 C 0.07 0.80 3.05 -27.84 -0.09 0.72 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 26 C -0.14 -1.09 5.37 -26.59 -0.14 -1.23 16 27 C -0.12 -0.73 6.03 -26.55 -0.16 -0.89 16 28 C -0.16 -1.05 6.14 -26.59 -0.16 -1.21 16 29 C 0.06 0.50 6.84 37.20 0.25 0.76 16 30 O -0.35 -4.57 9.94 -55.09 -0.55 -5.12 16 31 H 0.06 0.48 8.11 -51.92 -0.42 0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.53 7.93 -51.93 -0.41 0.12 16 36 H 0.05 0.87 7.73 -51.93 -0.40 0.46 16 37 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 38 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.05 0.86 7.52 -51.93 -0.39 0.47 16 41 H 0.10 1.96 7.31 -51.93 -0.38 1.58 16 42 H 0.40 3.42 8.20 -40.82 -0.33 3.09 16 43 H 0.08 0.44 7.99 -51.93 -0.41 0.03 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -35.91 400.67 -9.76 -45.67 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -8.44 Total: 10.52 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -0.90 Total: 9.07 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.73 Total: -56.94 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.70 Total: -30.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.91 -9.76 -45.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206875591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.891 kcal (2) G-P(sol) polarization free energy of solvation -35.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds