Wall clock time and date at job start Tue Mar 31 2020 23:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 110.78389 * 2 1 4 4 C 1.54942 * 110.72142 * 236.75036 * 2 1 3 5 5 N 1.48536 * 103.22418 * 204.22701 * 4 2 1 6 6 C 1.46901 * 110.99521 * 159.72350 * 5 4 2 7 7 C 1.50700 * 109.46900 * 170.00139 * 6 5 4 8 8 O 1.21291 * 120.00026 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99894 * 180.02562 * 7 6 5 10 10 C 1.37096 * 119.99744 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.38956 * 119.99907 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00197 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99978 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47190 * 90.00150 * 14 12 10 16 16 H 1.48499 * 109.46996 * 209.99790 * 14 12 10 17 17 H 1.48498 * 109.47138 * 330.00000 * 14 12 10 18 18 C 1.47900 * 105.82189 * 39.21141 * 5 4 2 19 19 C 1.53998 * 107.05419 * 334.66788 * 18 5 4 20 20 H 1.09006 * 110.30596 * 120.24603 * 19 18 5 21 21 N 1.46503 * 110.30496 * 242.30477 * 19 18 5 22 22 C 1.34772 * 120.00512 * 273.55055 * 21 19 18 23 23 O 1.21282 * 119.99946 * 359.97438 * 22 21 19 24 24 C 1.50700 * 120.00260 * 180.02562 * 22 21 19 25 25 H 1.09005 * 109.47821 * 305.02011 * 24 22 21 26 26 C 1.53089 * 109.48384 * 65.05133 * 24 22 21 27 27 C 1.53175 * 109.16034 * 177.59409 * 26 24 22 28 28 C 1.53176 * 109.04123 * 303.01864 * 27 26 24 29 29 C 1.53092 * 109.16070 * 56.98011 * 28 27 26 30 30 O 1.42900 * 109.48248 * 184.99994 * 24 22 21 31 31 H 1.09010 * 109.47264 * 181.79460 * 1 2 3 32 32 H 1.09005 * 109.47395 * 301.79117 * 1 2 3 33 33 H 1.08995 * 109.47420 * 61.79501 * 1 2 3 34 34 H 1.09004 * 110.66299 * 85.79479 * 4 2 1 35 35 H 1.09000 * 110.66998 * 322.66146 * 4 2 1 36 36 H 1.08996 * 109.47126 * 289.99999 * 6 5 4 37 37 H 1.08996 * 109.47465 * 50.00271 * 6 5 4 38 38 H 0.97000 * 120.00480 * 0.02562 * 9 7 6 39 39 H 0.96995 * 120.00578 * 180.02562 * 13 12 10 40 40 H 1.08998 * 109.91806 * 94.01913 * 18 5 4 41 41 H 1.08995 * 109.91750 * 215.12045 * 18 5 4 42 42 H 0.97010 * 119.99696 * 93.55555 * 21 19 18 43 43 H 1.09000 * 109.52240 * 297.50118 * 26 24 22 44 44 H 1.09001 * 109.52118 * 57.69155 * 26 24 22 45 45 H 1.09006 * 109.54283 * 183.15421 * 27 26 24 46 46 H 1.08999 * 109.54428 * 62.89280 * 27 26 24 47 47 H 1.09001 * 109.52140 * 297.08208 * 28 27 26 48 48 H 1.09000 * 109.57800 * 176.91882 * 28 27 26 49 49 H 1.08997 * 109.48166 * 182.40561 * 29 28 27 50 50 H 1.08999 * 109.47869 * 62.37429 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0782 -0.7946 -1.2119 5 7 3.4317 -1.2092 -0.7622 6 6 3.9210 -2.3498 -1.5482 7 6 5.3768 -2.5858 -1.2382 8 8 5.9504 -1.8736 -0.4413 9 7 6.0417 -3.5875 -1.8472 10 6 7.3659 -3.8025 -1.5648 11 1 7.8764 -3.1689 -0.8546 12 6 8.0515 -4.8350 -2.1930 13 7 7.4308 -5.6051 -3.0582 14 14 9.8561 -5.1275 -1.8088 15 1 9.9727 -6.0752 -0.6715 16 1 10.5296 -5.7007 -3.0017 17 1 10.5004 -3.8393 -1.4477 18 6 3.2893 -1.5710 0.6648 19 6 2.0770 -0.7928 1.2091 20 1 1.3214 -1.4834 1.5839 21 7 2.4971 0.1249 2.2710 22 6 2.5788 -0.3097 3.5441 23 8 2.3041 -1.4605 3.8108 24 6 3.0104 0.6345 4.6365 25 1 3.9730 1.0750 4.3768 26 6 1.9671 1.7437 4.7943 27 6 2.3825 2.6645 5.9458 28 6 2.5412 1.8301 7.2205 29 6 3.5623 0.7175 6.9689 30 8 3.1309 -0.0828 5.8665 31 1 -0.3634 -1.0272 0.0322 32 1 -0.3634 0.5414 0.8735 33 1 -0.3634 0.4857 -0.9056 34 1 2.1443 -0.1557 -2.0926 35 1 1.4559 -1.6665 -1.4137 36 1 3.3463 -3.2401 -1.2931 37 1 3.8060 -2.1351 -2.6105 38 1 5.5833 -4.1564 -2.4853 39 1 7.9093 -6.3260 -3.4965 40 1 3.1160 -2.6428 0.7606 41 1 4.1900 -1.2903 1.2107 42 1 2.7164 1.0455 2.0578 43 1 1.9056 2.3200 3.8711 44 1 0.9955 1.3013 5.0141 45 1 1.6159 3.4239 6.1002 46 1 3.3305 3.1454 5.7043 47 1 1.5812 1.3894 7.4892 48 1 2.8897 2.4674 8.0332 49 1 3.6477 0.0944 7.8591 50 1 4.5321 1.1592 6.7398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206875591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:31 Heat of formation + Delta-G solvation = -145.403687 kcal Electronic energy + Delta-G solvation = -30186.839675 eV Core-core repulsion = 26019.457807 eV Total energy + Delta-G solvation = -4167.381868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59795 -40.65230 -39.76102 -38.91437 -36.08281 -35.57956 -34.62126 -33.77292 -33.25131 -32.41244 -30.11692 -28.70493 -26.90972 -26.66455 -25.20173 -24.81484 -22.76755 -21.80704 -21.41620 -21.08764 -20.83819 -19.86147 -18.53799 -18.06928 -17.64895 -17.23347 -16.71404 -16.66565 -16.46504 -16.29157 -15.96088 -15.55865 -15.47657 -15.32109 -15.22033 -14.80701 -14.57046 -14.15750 -14.06259 -13.75983 -13.63380 -13.56221 -13.41411 -13.28545 -13.07087 -12.95356 -12.57555 -12.49156 -12.43621 -12.28316 -12.17743 -12.13360 -11.96072 -11.86581 -11.69160 -11.51156 -11.42039 -10.79871 -10.50650 -10.36018 -10.18023 -10.02440 -9.36516 -8.48165 -5.96900 1.35855 1.38955 1.47178 1.52109 1.79078 2.04169 2.26917 2.78004 2.99637 3.17689 3.29158 3.51555 3.59130 3.62222 3.74530 3.88574 3.98867 4.01140 4.03780 4.16615 4.18802 4.27787 4.31687 4.41957 4.46451 4.49499 4.57443 4.62236 4.65982 4.79335 4.82438 4.84374 4.85323 4.92947 5.01206 5.06182 5.07418 5.14469 5.19541 5.35068 5.35921 5.38727 5.49321 5.78877 5.90980 6.06169 6.09168 6.49626 6.59221 7.11434 7.16161 7.54707 8.11160 8.69458 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.002583 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.170317 B =10837.864503 C =12727.973850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.107 0.893 4 C 0.035 3.965 5 N -0.506 5.506 6 C 0.048 3.952 7 C 0.439 3.561 8 O -0.617 6.617 9 N -0.576 5.576 10 C -0.333 4.333 11 H 0.076 0.924 12 C -0.014 4.014 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.273 1.273 16 H -0.267 1.267 17 H -0.272 1.272 18 C 0.039 3.961 19 C 0.147 3.853 20 H 0.084 0.916 21 N -0.699 5.699 22 C 0.514 3.486 23 O -0.575 6.575 24 C 0.074 3.926 25 H 0.099 0.901 26 C -0.137 4.137 27 C -0.119 4.119 28 C -0.155 4.155 29 C 0.049 3.951 30 O -0.395 6.395 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.022 0.978 41 H 0.052 0.948 42 H 0.417 0.583 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.072 19.036 11.270 27.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.125 0.875 4 C -0.092 4.092 5 N -0.231 5.231 6 C -0.084 4.084 7 C 0.227 3.773 8 O -0.502 6.502 9 N -0.214 5.214 10 C -0.462 4.462 11 H 0.094 0.906 12 C -0.214 4.214 13 N -0.562 5.562 14 Si 0.816 3.184 15 H -0.199 1.199 16 H -0.192 1.192 17 H -0.197 1.197 18 C -0.090 4.090 19 C 0.041 3.959 20 H 0.102 0.898 21 N -0.352 5.352 22 C 0.300 3.700 23 O -0.453 6.453 24 C 0.013 3.987 25 H 0.116 0.884 26 C -0.175 4.175 27 C -0.156 4.156 28 C -0.193 4.193 29 C -0.027 4.027 30 O -0.314 6.314 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.255 0.745 43 H 0.123 0.877 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.115 0.885 49 H 0.119 0.881 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.478 18.748 11.816 27.616 hybrid contribution 0.710 -1.317 -0.128 1.502 sum -15.768 17.431 11.688 26.250 Atomic orbital electron populations 1.21750 0.91754 1.02427 1.03449 1.22320 0.97242 0.99908 0.90798 0.87533 1.23528 0.87142 0.99522 0.98991 1.64418 1.24457 1.32783 1.01413 1.21965 0.91790 0.93912 1.00735 1.20836 0.90116 0.82339 0.84033 1.90476 1.70877 1.49824 1.39062 1.41934 1.10527 1.29117 1.39811 1.19629 0.87112 1.14949 1.24522 0.90585 1.26045 1.04446 0.95195 0.95666 1.69666 1.39043 1.19506 1.27957 0.84938 0.76902 0.78435 0.78117 1.19860 1.19202 1.19719 1.23131 0.98480 0.97149 0.90258 1.21876 0.94224 0.91979 0.87790 0.89774 1.45795 1.68617 1.15279 1.05557 1.20852 0.76621 0.88214 0.84283 1.90702 1.50103 1.21056 1.83472 1.22016 1.01057 0.91355 0.84284 0.88375 1.22137 0.97623 0.95648 1.02088 1.21628 1.03369 0.97472 0.93146 1.22205 0.99948 0.97691 0.99422 1.22915 0.97215 0.93934 0.88631 1.88024 1.88918 1.36916 1.17530 0.92871 0.91549 0.89962 0.87552 0.92272 0.91742 0.86394 0.77035 0.91276 0.95941 0.92953 0.74473 0.87684 0.91623 0.89111 0.90218 0.91786 0.88498 0.88089 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.16 71.98 0.66 -1.03 16 2 C -0.08 -1.45 3.36 -9.59 -0.03 -1.48 16 3 H 0.11 1.54 7.74 -2.39 -0.02 1.53 16 4 C 0.04 0.75 5.96 86.65 0.52 1.27 16 5 N -0.51 -16.63 4.91 -887.56 -4.36 -20.99 16 6 C 0.05 1.73 5.27 85.56 0.45 2.18 16 7 C 0.44 22.07 7.61 87.66 0.67 22.74 16 8 O -0.62 -35.86 14.87 -3.06 -0.05 -35.91 16 9 N -0.58 -30.94 5.29 -306.98 -1.62 -32.57 16 10 C -0.33 -19.64 9.68 84.04 0.81 -18.83 16 11 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 12 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 13 N -0.92 -51.08 13.05 21.66 0.28 -50.80 16 14 Si 0.99 44.39 29.55 68.60 2.03 46.41 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 C 0.04 1.40 5.65 86.45 0.49 1.89 16 19 C 0.15 3.75 2.87 45.87 0.13 3.88 16 20 H 0.08 2.35 7.33 -2.38 -0.02 2.34 16 21 N -0.70 -15.87 4.99 -438.37 -2.19 -18.06 16 22 C 0.51 14.72 7.17 87.66 0.63 15.35 16 23 O -0.57 -22.84 16.20 15.95 0.26 -22.58 16 24 C 0.07 1.59 3.05 29.88 0.09 1.69 16 25 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 26 C -0.14 -1.83 5.37 30.68 0.16 -1.66 16 27 C -0.12 -1.13 6.03 30.71 0.19 -0.94 16 28 C -0.16 -1.80 6.14 30.68 0.19 -1.62 16 29 C 0.05 0.83 6.84 72.01 0.49 1.33 16 30 O -0.39 -10.60 9.94 -130.00 -1.29 -11.89 16 31 H 0.05 0.74 8.11 -2.38 -0.02 0.72 16 32 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.06 1.15 7.93 -2.39 -0.02 1.14 16 36 H 0.06 2.18 7.73 -2.39 -0.02 2.16 16 37 H 0.12 3.62 8.08 -2.39 -0.02 3.60 16 38 H 0.40 20.11 7.90 -92.71 -0.73 19.38 16 39 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.02 0.88 7.52 -2.39 -0.02 0.86 16 41 H 0.05 2.29 7.31 -2.39 -0.02 2.28 16 42 H 0.42 6.47 8.20 -92.70 -0.76 5.71 16 43 H 0.10 0.84 7.99 -2.39 -0.02 0.82 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 46 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -83.40 400.67 -1.57 -84.97 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.54 Total: 36.96 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 5.91 Total: 24.45 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -7.89 Total: -122.41 kcal Atomic # 8 Polarization: -69.30 SS G_CDS: -1.08 Total: -70.38 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -83.40 -1.57 -84.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206875591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.436 kcal (2) G-P(sol) polarization free energy of solvation -83.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds