Wall clock time and date at job start Tue Mar 31 2020 23:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50695 * 119.99985 * 2 1 4 4 C 1.53005 * 109.47334 * 239.99836 * 3 2 1 5 5 O 1.42891 * 109.47223 * 0.02562 * 3 2 1 6 6 C 1.53003 * 109.46762 * 120.00602 * 3 2 1 7 7 C 1.50704 * 109.46873 * 179.97438 * 6 3 2 8 8 O 1.21279 * 120.00093 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99847 * 179.97438 * 7 6 3 10 10 C 1.46504 * 119.99860 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.27292 * 34.30345 * 10 9 7 12 12 C 1.54000 * 110.31047 * 272.21219 * 10 9 7 13 13 N 1.48115 * 106.94761 * 242.18051 * 12 10 9 14 14 C 1.46899 * 111.00678 * 214.20565 * 13 12 10 15 15 C 1.50707 * 109.46992 * 307.45498 * 14 13 12 16 16 O 1.21298 * 119.99465 * 0.02562 * 15 14 13 17 17 N 1.34768 * 120.00238 * 180.02562 * 15 14 13 18 18 C 1.37101 * 120.00053 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00091 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99864 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00074 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99840 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47124 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47305 * 119.99743 * 22 20 18 25 25 H 1.48502 * 109.47327 * 240.00062 * 22 20 18 26 26 C 1.48540 * 105.86678 * 334.74612 * 13 12 10 27 27 C 1.54598 * 110.30819 * 156.39529 * 10 9 7 28 28 H 1.08996 * 110.72328 * 22.60878 * 27 10 9 29 29 C 1.53005 * 110.72178 * 259.33322 * 27 10 9 30 30 H 1.08003 * 120.00147 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.00251 * 359.97438 * 1 2 3 32 32 H 1.08005 * 119.99735 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47334 * 300.00929 * 4 3 2 34 34 H 1.09007 * 109.46722 * 60.00461 * 4 3 2 35 35 H 1.09000 * 109.47309 * 180.02562 * 4 3 2 36 36 H 0.96696 * 114.00577 * 59.99665 * 5 3 2 37 37 H 1.08990 * 109.47600 * 59.99845 * 6 3 2 38 38 H 1.08997 * 109.46934 * 299.99592 * 6 3 2 39 39 H 0.96996 * 120.00436 * 0.02562 * 9 7 6 40 40 H 1.08997 * 109.91447 * 1.56566 * 12 10 9 41 41 H 1.09000 * 109.91056 * 122.85596 * 12 10 9 42 42 H 1.08995 * 109.47423 * 67.45113 * 14 13 12 43 43 H 1.08999 * 109.47348 * 187.45572 * 14 13 12 44 44 H 0.97003 * 120.00273 * 359.97438 * 17 15 14 45 45 H 0.97003 * 119.99867 * 180.02562 * 21 20 18 46 46 H 1.09006 * 110.66684 * 280.73949 * 26 13 12 47 47 H 1.08995 * 110.81165 * 157.67285 * 26 13 12 48 48 H 1.09000 * 109.47294 * 59.99227 * 29 27 10 49 49 H 1.08996 * 109.47389 * 180.02562 * 29 27 10 50 50 H 1.09003 * 109.46600 * 300.00092 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3861 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3860 1.2492 7 6 3.6971 2.6908 1.2489 8 8 3.5461 3.4782 0.3390 9 7 4.5392 2.9827 2.2599 10 6 5.2727 4.2509 2.2593 11 1 4.6643 5.0388 1.8152 12 6 6.5984 4.1014 1.4902 13 7 7.6901 4.3599 2.4571 14 6 8.8250 5.0261 1.8043 15 6 9.2386 4.2376 0.5884 16 8 8.6459 3.2210 0.2944 17 7 10.2670 4.6619 -0.1722 18 6 10.6436 3.9443 -1.2780 19 1 10.1159 3.0391 -1.5399 20 6 11.7036 4.3822 -2.0626 21 7 12.3448 5.4843 -1.7449 22 14 12.2162 3.4048 -3.5697 23 1 11.3410 2.2131 -3.7081 24 1 12.0882 4.2567 -4.7792 25 1 13.6273 2.9671 -3.4195 26 6 7.1016 5.2235 3.5128 27 6 5.6805 4.6356 3.7001 28 1 5.7089 3.7545 4.3411 29 6 4.7289 5.6901 4.2688 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5401 0.9353 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 3.6514 0.5576 -1.2493 34 1 2.3164 1.3285 -2.1393 35 1 3.4884 2.3299 -1.2490 36 1 0.5438 2.4030 0.7658 37 1 3.6514 0.5575 1.2492 38 1 2.3165 1.3282 2.1392 39 1 4.6603 2.3528 2.9875 40 1 6.6847 3.0904 1.0921 41 1 6.6406 4.8278 0.6786 42 1 8.5317 6.0316 1.5027 43 1 9.6614 5.0851 2.5008 44 1 10.7409 5.4751 0.0627 45 1 13.0845 5.7902 -2.2928 46 1 7.0483 6.2592 3.1771 47 1 7.6737 5.1490 4.4375 48 1 3.7139 5.2931 4.2843 49 1 5.0348 5.9463 5.2832 50 1 4.7604 6.5826 3.6438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206914528.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:46 Heat of formation + Delta-G solvation = -90.893670 kcal Electronic energy + Delta-G solvation = -30365.505501 eV Core-core repulsion = 26200.487365 eV Total energy + Delta-G solvation = -4165.018136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39736 -39.31443 -38.08348 -37.34831 -34.42290 -33.81646 -33.20096 -32.56068 -31.43621 -31.23313 -29.19471 -27.92502 -27.01636 -25.24375 -23.94092 -22.90316 -21.37069 -20.58138 -19.99618 -19.84203 -19.05441 -17.79825 -17.47021 -16.82532 -16.41161 -15.94867 -15.70227 -15.47678 -15.02087 -14.72884 -14.55836 -14.51593 -14.07723 -13.80950 -13.56814 -13.23495 -13.20390 -13.03705 -12.60844 -12.40867 -12.31615 -12.16649 -12.00667 -11.86493 -11.76180 -11.65484 -11.51827 -11.30582 -11.23066 -11.19323 -11.05804 -10.78658 -10.72358 -10.36922 -10.32298 -10.21109 -9.72115 -9.49770 -9.47565 -8.92319 -8.38331 -7.98716 -7.90734 -6.40531 -3.81095 1.91444 2.72761 3.17366 3.18306 3.28064 3.35427 3.91291 4.07798 4.09846 4.27010 4.41493 4.49603 4.52949 4.71751 4.79146 4.95611 4.96523 5.04444 5.07679 5.26382 5.30791 5.34003 5.40816 5.47371 5.51609 5.56468 5.57213 5.71713 5.78720 5.81219 5.83225 5.92247 5.96291 5.98469 6.11450 6.15223 6.22296 6.29291 6.35102 6.45671 6.56988 6.79432 7.20244 7.26867 7.53009 7.56662 7.56967 8.07422 8.35120 8.62654 9.19345 9.55243 10.06750 10.77326 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009981 B = 0.002916 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.622664 B = 9599.804365 C =11982.277600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.184 4.184 3 C 0.177 3.823 4 C -0.150 4.150 5 O -0.537 6.537 6 C -0.166 4.166 7 C 0.513 3.487 8 O -0.514 6.514 9 N -0.720 5.720 10 C 0.135 3.865 11 H 0.091 0.909 12 C 0.043 3.957 13 N -0.496 5.496 14 C 0.035 3.965 15 C 0.441 3.559 16 O -0.580 6.580 17 N -0.563 5.563 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.036 3.964 27 C -0.099 4.099 28 H 0.087 0.913 29 C -0.142 4.142 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.366 0.634 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.398 0.602 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.046 0.954 47 H 0.083 0.917 48 H 0.056 0.944 49 H 0.059 0.941 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.577 -4.692 12.969 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.202 4.202 3 C 0.136 3.864 4 C -0.206 4.206 5 O -0.342 6.342 6 C -0.206 4.206 7 C 0.298 3.702 8 O -0.389 6.389 9 N -0.372 5.372 10 C 0.029 3.971 11 H 0.109 0.891 12 C -0.085 4.085 13 N -0.220 5.220 14 C -0.096 4.096 15 C 0.227 3.773 16 O -0.464 6.464 17 N -0.199 5.199 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.092 4.092 27 C -0.119 4.119 28 H 0.105 0.895 29 C -0.199 4.199 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.212 0.788 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.232 0.768 40 H 0.124 0.876 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.399 -5.050 11.625 23.173 hybrid contribution 0.320 0.282 -0.032 0.428 sum -19.079 -4.768 11.593 22.829 Atomic orbital electron populations 1.23850 0.96028 1.02303 0.99928 1.23650 0.96742 0.98926 1.00901 1.19863 0.87898 0.83886 0.94748 1.21966 0.98808 1.04846 0.95013 1.86756 1.50030 1.48988 1.48401 1.22393 1.00486 0.97284 1.00442 1.20380 0.79392 0.88324 0.82056 1.90705 1.64129 1.49677 1.34421 1.46055 1.44745 1.20948 1.25500 1.22043 0.93378 0.86082 0.95595 0.89064 1.23333 0.87244 1.04645 0.93303 1.64670 1.06200 1.40224 1.10909 1.22112 0.95227 0.95815 0.96482 1.19730 0.83920 0.87908 0.85754 1.90498 1.55998 1.26777 1.73165 1.41855 1.28771 1.25027 1.24285 1.19742 1.13681 1.07587 1.01642 0.87889 1.25262 0.96474 0.96643 0.99605 1.69620 1.22530 1.22121 1.40049 0.85807 0.78378 0.79536 0.80671 1.19214 1.20749 1.20753 1.23349 0.93817 0.95222 0.96828 1.22319 0.94836 0.99206 0.95535 0.89473 1.21771 0.98818 0.98419 1.00924 0.88296 0.87769 0.86579 0.91631 0.92259 0.88490 0.78802 0.87848 0.88936 0.76813 0.87629 0.93639 0.93287 0.89114 0.77480 0.91935 0.93580 0.89840 0.92485 0.92220 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 13.93 29.02 0.40 -0.96 16 2 C -0.18 -1.53 8.77 -36.03 -0.32 -1.84 16 3 C 0.18 1.86 0.94 -91.77 -0.09 1.78 16 4 C -0.15 -1.93 8.50 37.16 0.32 -1.61 16 5 O -0.54 -6.24 10.85 -53.47 -0.58 -6.81 16 6 C -0.17 -1.51 4.93 -27.88 -0.14 -1.65 16 7 C 0.51 6.59 7.39 -10.98 -0.08 6.51 16 8 O -0.51 -8.83 12.63 -12.68 -0.16 -8.99 16 9 N -0.72 -8.26 5.02 -52.48 -0.26 -8.52 16 10 C 0.13 1.79 2.89 -66.57 -0.19 1.60 16 11 H 0.09 1.34 7.31 -51.93 -0.38 0.96 16 12 C 0.04 0.76 4.87 -2.63 -0.01 0.75 16 13 N -0.50 -8.25 5.26 -231.70 -1.22 -9.47 16 14 C 0.04 0.65 5.49 -4.97 -0.03 0.62 16 15 C 0.44 10.58 7.36 -10.99 -0.08 10.49 16 16 O -0.58 -15.66 13.37 5.54 0.07 -15.58 16 17 N -0.56 -14.50 5.29 -10.96 -0.06 -14.55 16 18 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 22 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.04 0.44 6.00 -1.90 -0.01 0.43 16 27 C -0.10 -1.04 3.37 -88.76 -0.30 -1.34 16 28 H 0.09 0.83 7.75 -51.93 -0.40 0.42 16 29 C -0.14 -1.20 9.16 37.16 0.34 -0.86 16 30 H 0.10 0.60 8.06 -52.48 -0.42 0.17 16 31 H 0.10 0.75 6.41 -52.48 -0.34 0.41 16 32 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.58 5.51 -51.93 -0.29 1.29 16 36 H 0.37 2.80 8.05 45.56 0.37 3.17 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 3.46 8.36 -40.82 -0.34 3.12 16 40 H 0.11 2.22 6.54 -51.93 -0.34 1.88 16 41 H 0.05 0.91 7.59 -51.93 -0.39 0.52 16 42 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16 43 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.05 0.55 7.73 -51.93 -0.40 0.15 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 400.97 15.07 6.04 6.04 Total: -1.00 -34.62 400.97 -8.29 -42.92 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -7.41 Total: 16.85 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.42 Total: 5.88 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.82 Total: -56.67 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.67 Total: -31.39 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.62 -8.29 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206914528.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.975 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds